-
1
-
-
78650034777
-
Towards a knowledge-based Human Protein Atlas
-
Uhlen M, Oksvold P, Fagerberg L, Lundberg E, Jonasson K, Forsberg M, et al. Towards a knowledge-based Human Protein Atlas. Nat Biotechnol 2010;28:1248-50.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 1248-1250
-
-
Uhlen, M.1
Oksvold, P.2
Fagerberg, L.3
Lundberg, E.4
Jonasson, K.5
Forsberg, M.6
-
2
-
-
2942598149
-
PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation
-
Hornbeck PV, Chabra I, Kornhauser JM, Skrzypek E, Zhang B. PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation. Proteomics 2004;4:1551-61.
-
(2004)
Proteomics
, vol.4
, pp. 1551-1561
-
-
Hornbeck, P.V.1
Chabra, I.2
Kornhauser, J.M.3
Skrzypek, E.4
Zhang, B.5
-
3
-
-
77954062372
-
Antibody validation
-
Bordeaux J, Welsh A, Agarwal S, Killiam E, Baquero M, Hanna J, et al. Antibody validation. Biotechniques 2010;48:197-209.
-
(2010)
Biotechniques
, vol.48
, pp. 197-209
-
-
Bordeaux, J.1
Welsh, A.2
Agarwal, S.3
Killiam, E.4
Baquero, M.5
Hanna, J.6
-
4
-
-
81855166731
-
Multiplexed immuno-precipitation with 1725 commercially available antibodies to cellular proteins
-
Slaastad H, Wu W, Goullart L, Kanderova V, Tjonnfjord G, Stuchly J, et al. Multiplexed immuno-precipitation with 1725 commercially available antibodies to cellular proteins. Proteomics 2011;11:4578-82.
-
(2011)
Proteomics
, vol.11
, pp. 4578-4582
-
-
Slaastad, H.1
Wu, W.2
Goullart, L.3
Kanderova, V.4
Tjonnfjord, G.5
Stuchly, J.6
-
5
-
-
79959851876
-
Renewable Protein Binder Working G, Graslund S. A roadmap to generate renewable protein binders to the human proteome
-
Colwill K, Renewable Protein Binder Working G, Graslund S. A roadmap to generate renewable protein binders to the human proteome. Nat Methods 2011;8:551-8.
-
(2011)
Nat Methods
, vol.8
, pp. 551-558
-
-
Colwill, K.1
-
6
-
-
38849154606
-
Application of phage display to high throughput antibody generation and characterization
-
Schofield DJ, Pope AR, Clementel V, Buckell J, Chapple S, Clarke KF, et al. Application of phage display to high throughput antibody generation and characterization. Genome Biol 2007;8:R254.
-
(2007)
Genome Biol
, vol.8
, pp. R254
-
-
Schofield, D.J.1
Pope, A.R.2
Clementel, V.3
Buckell, J.4
Chapple, S.5
Clarke, K.F.6
-
7
-
-
79251474166
-
A human scFv antibody generation pipeline for proteome research
-
Hust M, Meyer T, Voedisch B, Rulker T, Thie H, El-Ghezal A, et al. A human scFv antibody generation pipeline for proteome research. J Biotechnol 2011;152:159-70.
-
(2011)
J Biotechnol
, vol.152
, pp. 159-170
-
-
Hust, M.1
Meyer, T.2
Voedisch, B.3
Rulker, T.4
Thie, H.5
El-Ghezal, A.6
-
8
-
-
34848848421
-
High-throughput generation of synthetic antibodies from highly functional minimalist phage-displayed libraries
-
Fellouse FA, Esaki K, Birtalan S, Raptis D, Cancasci VJ, Koide A, et al. High-throughput generation of synthetic antibodies from highly functional minimalist phage-displayed libraries. J Mol Biol 2007;373:924-40.
-
(2007)
J Mol Biol
, vol.373
, pp. 924-940
-
-
Fellouse, F.A.1
Esaki, K.2
Birtalan, S.3
Raptis, D.4
Cancasci, V.J.5
Koide, A.6
-
9
-
-
84877121241
-
Generating conformation-specific synthetic antibodies to trap proteins in selected functional states
-
Paduch M, Koide A, Uysal S, Rizk SS, Koide S, Kossiakoff AA. Generating conformation-specific synthetic antibodies to trap proteins in selected functional states. Methods 2013;60:3-14.
-
(2013)
Methods
, vol.60
, pp. 3-14
-
-
Paduch, M.1
Koide, A.2
Uysal, S.3
Rizk, S.S.4
Koide, S.5
Kossiakoff, A.A.6
-
10
-
-
63849316467
-
Automated panning and screening procedure on microplates for antibody generation from phage display libraries
-
Turunen L, Takkinen K, Soderlund H, Pulli T. Automated panning and screening procedure on microplates for antibody generation from phage display libraries. J Biomol Screen 2009;14:282-93.
-
(2009)
J Biomol Screen
, vol.14
, pp. 282-293
-
-
Turunen, L.1
Takkinen, K.2
Soderlund, H.3
Pulli, T.4
-
11
-
-
0035169340
-
A helper phage to improve single-chain antibody presentation in phage display
-
Rondot S, Koch J, Breitling F, Dubel S. A helper phage to improve single-chain antibody presentation in phage display. Nat Biotechnol 2001;19:75-8.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 75-78
-
-
Rondot, S.1
Koch, J.2
Breitling, F.3
Dubel, S.4
-
12
-
-
0038268054
-
A novel helper phage that improves phage display selection efficiency by preventing the amplification of phages without recombinant protein
-
Kramer RA, Cox F, van der Horst M, van der Oudenrijn S, Res PC, Bia J, et al. A novel helper phage that improves phage display selection efficiency by preventing the amplification of phages without recombinant protein. Nucleic Acids Res 2003;31:e59.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. e59
-
-
Kramer, R.A.1
Cox, F.2
Van Der Horst, M.3
Van Der Oudenrijn, S.4
Res, P.C.5
Bia, J.6
-
13
-
-
0036511677
-
An improved helper phage system for efficient isolation of specific antibody molecules in phage display
-
Baek H, Suk KH, Kim YH, Cha S. An improved helper phage system for efficient isolation of specific antibody molecules in phage display. Nucleic Acids Res 2002;30:e18.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. e18
-
-
Baek, H.1
Suk, K.H.2
Kim, Y.H.3
Cha, S.4
-
14
-
-
80053303946
-
HuCAL PLATINUM, a synthetic Fab library optimized for sequence diversity and superior performance in mammalian expression systems
-
Prassler J, Thiel S, Pracht C, Polzer A, Peters S, Bauer M, et al. HuCAL PLATINUM, a synthetic Fab library optimized for sequence diversity and superior performance in mammalian expression systems. J Mol Biol 2011;413:261-78.
-
(2011)
J Mol Biol
, vol.413
, pp. 261-278
-
-
Prassler, J.1
Thiel, S.2
Pracht, C.3
Polzer, A.4
Peters, S.5
Bauer, M.6
-
15
-
-
77949915973
-
A method for rapid, ligation-independent reformatting of recombinant monoclonal antibodies
-
Jones ML, Seldon T, Smede M, Linville A, Chin DY, Barnard R, et al. A method for rapid, ligation-independent reformatting of recombinant monoclonal antibodies. J Immunol Methods 2010;354:85-90.
-
(2010)
J Immunol Methods
, vol.354
, pp. 85-90
-
-
Jones, M.L.1
Seldon, T.2
Smede, M.3
Linville, A.4
Chin, D.Y.5
Barnard, R.6
-
16
-
-
84885008151
-
A dual host vector for Fab phage display and expression of native IgG in mammalian cells
-
Tesar D, Hotzel I. A dual host vector for Fab phage display and expression of native IgG in mammalian cells. Protein Eng Des Sel 2013;26:655-62.
-
(2013)
Protein Eng des Sel
, vol.26
, pp. 655-662
-
-
Tesar, D.1
Hotzel, I.2
-
17
-
-
84884890910
-
Nature-inspired design of motif-specific antibody scaffolds
-
Koerber JT, Thomsen ND, Hannigan BT, Degrado WF, Wells JA. Nature-inspired design of motif-specific antibody scaffolds. Nat Biotechnol 2013;31:916-21.
-
(2013)
Nat Biotechnol
, vol.31
, pp. 916-921
-
-
Koerber, J.T.1
Thomsen, N.D.2
Hannigan, B.T.3
Degrado, W.F.4
Wells, J.A.5
-
18
-
-
0035793208
-
Stability engineering of antibody single-chain Fv fragments
-
Worn A, Pluckthun A. Stability engineering of antibody single-chain Fv fragments. J Mol Biol 2001;305:989-1010.
-
(2001)
J Mol Biol
, vol.305
, pp. 989-1010
-
-
Worn, A.1
Pluckthun, A.2
-
19
-
-
38649086154
-
Single chain Fab (scFab) fragment
-
Hust M, Jostock T, Menzel C, Voedisch B, Mohr A, Brenneis M, et al. Single chain Fab (scFab) fragment. BMC Biotechnol 2007;7:14.
-
(2007)
BMC Biotechnol
, vol.7
, pp. 14
-
-
Hust, M.1
Jostock, T.2
Menzel, C.3
Voedisch, B.4
Mohr, A.5
Brenneis, M.6
-
20
-
-
65549114651
-
Efficient recovery of high-affinity antibodies from a single-chain Fab yeast display library
-
Walker LM, Bowley DR, Burton DR. Efficient recovery of high-affinity antibodies from a single-chain Fab yeast display library. J Mol Biol 2009;389:365-75.
-
(2009)
J Mol Biol
, vol.389
, pp. 365-375
-
-
Walker, L.M.1
Bowley, D.R.2
Burton, D.R.3
-
21
-
-
77953665293
-
Oligomeric forms of single chain immunoglobulin (scIgG)
-
Schirrmann T, Menzel C, Hust M, Prilop J, Jostock T, Dubel S. Oligomeric forms of single chain immunoglobulin (scIgG). MAbs 2010;2:73-6.
-
(2010)
MAbs
, vol.2
, pp. 73-76
-
-
Schirrmann, T.1
Menzel, C.2
Hust, M.3
Prilop, J.4
Jostock, T.5
Dubel, S.6
-
22
-
-
14844339334
-
Domain interactions in the Fab fragment: A comparative evaluation of the single-chain Fv and Fab format engineered with variable domains of different stability
-
Rothlisberger D, Honegger A, Pluckthun A. Domain interactions in the Fab fragment: a comparative evaluation of the single-chain Fv and Fab format engineered with variable domains of different stability. J Mol Biol 2005;347:773-89.
-
(2005)
J Mol Biol
, vol.347
, pp. 773-789
-
-
Rothlisberger, D.1
Honegger, A.2
Pluckthun, A.3
-
23
-
-
67849130555
-
PEP-FOLD: An online resource for de novo peptide structure prediction
-
Maupetit J, Derreumaux P, Tuffery P. PEP-FOLD: an online resource for de novo peptide structure prediction. Nucleic Acids Res 2009;37:W498-503.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. W498-W503
-
-
Maupetit, J.1
Derreumaux, P.2
Tuffery, P.3
-
24
-
-
44049095603
-
SRP and Sec pathway leader peptides for antibody phage display and antibody fragment production in E. coli
-
Thie H, Schirrmann T, Paschke M, Dubel S, Hust M. SRP and Sec pathway leader peptides for antibody phage display and antibody fragment production in E. coli. N Biotechnol 2008;25:49-54.
-
(2008)
N Biotechnol
, vol.25
, pp. 49-54
-
-
Thie, H.1
Schirrmann, T.2
Paschke, M.3
Dubel, S.4
Hust, M.5
-
25
-
-
1842609526
-
Phage-displayed antibody libraries of synthetic heavy chain complementarity determining regions
-
Sidhu SS, Li B, Chen Y, Fellouse FA, Eigenbrot C, Fuh G. Phage-displayed antibody libraries of synthetic heavy chain complementarity determining regions. J Mol Biol 2004;338:299-310.
-
(2004)
J Mol Biol
, vol.338
, pp. 299-310
-
-
Sidhu, S.S.1
Li, B.2
Chen, Y.3
Fellouse, F.A.4
Eigenbrot, C.5
Fuh, G.6
-
26
-
-
84873408836
-
CDR-H3 diversity is not required for antigen recognition by synthetic antibodies
-
Persson H, Ye W, Wernimont A, Adams JJ, Koide A, Koide S, et al. CDR-H3 diversity is not required for antigen recognition by synthetic antibodies. J Mol Biol 2013;425:803-11.
-
(2013)
J Mol Biol
, vol.425
, pp. 803-811
-
-
Persson, H.1
Ye, W.2
Wernimont, A.3
Adams, J.J.4
Koide, A.5
Koide, S.6
-
27
-
-
0037227517
-
Biophysical properties of human antibody variable domains
-
Ewert S, Huber T, Honegger A, Pluckthun A. Biophysical properties of human antibody variable domains. J Mol Biol 2003;325:531-53.
-
(2003)
J Mol Biol
, vol.325
, pp. 531-553
-
-
Ewert, S.1
Huber, T.2
Honegger, A.3
Pluckthun, A.4
-
28
-
-
40649126110
-
Rapid identification of reactive cysteine residues for site-specific labeling of antibody-Fabs
-
Junutula JR, Bhakta S, Raab H, Ervin KE, Eigenbrot C, Vandlen R, et al. Rapid identification of reactive cysteine residues for site-specific labeling of antibody-Fabs. J Immunol Methods 2008;332:41-52.
-
(2008)
J Immunol Methods
, vol.332
, pp. 41-52
-
-
Junutula, J.R.1
Bhakta, S.2
Raab, H.3
Ervin, K.E.4
Eigenbrot, C.5
Vandlen, R.6
-
29
-
-
84878145247
-
Structural snapshots reveal distinct mechanisms of procaspase-3 and -7 activation
-
Thomsen ND, Koerber JT, Wells JA. Structural snapshots reveal distinct mechanisms of procaspase-3 and -7 activation. Proc Natl Acad Sci U S A 2013;110:8477-82.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 8477-8482
-
-
Thomsen, N.D.1
Koerber, J.T.2
Wells, J.A.3
-
31
-
-
84855616485
-
Improving Expression of scFv Fragments by Co-expression of Periplasmic Chaperones
-
Schaefer JV, Pluckthun A. Improving Expression of scFv Fragments by Co-expression of Periplasmic Chaperones. Antibody Engineering, Second Edition 2010;2:345-61.
-
(2010)
Antibody Engineering, Second Edition
, vol.2
, pp. 345-361
-
-
Schaefer, J.V.1
Pluckthun, A.2
-
32
-
-
33745931632
-
A system for concomitant overexpression of four periplasmic folding catalysts to improve secretory protein production in Escherichia coli
-
Schlapschy M, Grimm S, Skerra A. A system for concomitant overexpression of four periplasmic folding catalysts to improve secretory protein production in Escherichia coli. Protein Eng Des Sel 2006;19:385-90.
-
(2006)
Protein Eng des Sel
, vol.19
, pp. 385-390
-
-
Schlapschy, M.1
Grimm, S.2
Skerra, A.3
-
33
-
-
33746161571
-
Signal sequences directing cotranslational translocation expand the range of proteins amenable to phage display
-
Steiner D, Forrer P, Stumpp MT, Pluckthun A. Signal sequences directing cotranslational translocation expand the range of proteins amenable to phage display. Nat Biotechnol 2006;24:823-31.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 823-831
-
-
Steiner, D.1
Forrer, P.2
Stumpp, M.T.3
Pluckthun, A.4
-
34
-
-
0141727632
-
The DsbA signal sequence directs efficient, cotranslational export of passenger proteins to the Escherichia coli periplasm via the signal recognition particle pathway
-
Schierle CF, Berkmen M, Huber D, Kumamoto C, Boyd D, Beckwith J. The DsbA signal sequence directs efficient, cotranslational export of passenger proteins to the Escherichia coli periplasm via the signal recognition particle pathway. J Bacteriol 2003;185:5706-13.
-
(2003)
J Bacteriol
, vol.185
, pp. 5706-5713
-
-
Schierle, C.F.1
Berkmen, M.2
Huber, D.3
Kumamoto, C.4
Boyd, D.5
Beckwith, J.6
-
35
-
-
0036439069
-
The presence of a helix breaker in the hydrophobic core of signal sequences of secretory proteins prevents recognition by the signal-recognition particle in Escherichia coli
-
Adams H, Scotti PA, De Cock H, Luirink J, Tommassen J. The presence of a helix breaker in the hydrophobic core of signal sequences of secretory proteins prevents recognition by the signal-recognition particle in Escherichia coli. Eur J Biochem 2002;269:5564-71.
-
(2002)
Eur J Biochem
, vol.269
, pp. 5564-5571
-
-
Adams, H.1
Scotti, P.A.2
De Cock, H.3
Luirink, J.4
Tommassen, J.5
-
36
-
-
77953025666
-
Recognition of a signal peptide by the signal recognition particle
-
Janda CY, Li J, Oubridge C, Hernandez H, Robinson CV, Nagai K. Recognition of a signal peptide by the signal recognition particle. Nature 2010;465:507-10.
-
(2010)
Nature
, vol.465
, pp. 507-510
-
-
Janda, C.Y.1
Li, J.2
Oubridge, C.3
Hernandez, H.4
Robinson, C.V.5
Nagai, K.6
-
37
-
-
0034283551
-
Selection of tumor-specific internalizing human antibodies from phage libraries
-
Poul MA, Becerril B, Nielsen UB, Morisson P, Marks JD. Selection of tumor-specific internalizing human antibodies from phage libraries. J Mol Biol 2000;301:1149-61.
-
(2000)
J Mol Biol
, vol.301
, pp. 1149-1161
-
-
Poul, M.A.1
Becerril, B.2
Nielsen, U.B.3
Morisson, P.4
Marks, J.D.5
-
38
-
-
84897417686
-
In vitro Fab display: A cell-free system for IgG discovery
-
Stafford RL, Matsumoto ML, Yin G, Cai Q, Fung JJ, Stephenson H, et al. In vitro Fab display: a cell-free system for IgG discovery. Protein Eng Des Sel 2014;27:97-109.
-
(2014)
Protein Eng des Sel
, vol.27
, pp. 97-109
-
-
Stafford, R.L.1
Matsumoto, M.L.2
Yin, G.3
Cai, Q.4
Fung, J.J.5
Stephenson, H.6
-
39
-
-
84863249248
-
Aglycosylated antibodies and antibody fragments produced in a scalable in vitro transcription-translation system
-
Yin G, Garces ED, Yang J, Zhang J, Tran C, Steiner AR, et al. Aglycosylated antibodies and antibody fragments produced in a scalable in vitro transcription-translation system. MAbs 2012;4:217-25.
-
(2012)
MAbs
, vol.4
, pp. 217-225
-
-
Yin, G.1
Garces, E.D.2
Yang, J.3
Zhang, J.4
Tran, C.5
Steiner, A.R.6
-
40
-
-
64949153511
-
Improving antibody binding affinity and specificity for therapeutic development
-
Bostrom J, Lee CV, Haber L, Fuh G. Improving antibody binding affinity and specificity for therapeutic development. Methods Mol Biol 2009;525:353-76, xiii.
-
(2009)
Methods Mol Biol
, vol.525
, pp. 353-376+xiii
-
-
Bostrom, J.1
Lee, C.V.2
Haber, L.3
Fuh, G.4
-
41
-
-
37249005205
-
The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability
-
Niesen FH, Berglund H, Vedadi M. The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability. Nat Protoc 2007;2:2212-21.
-
(2007)
Nat Protoc
, vol.2
, pp. 2212-2221
-
-
Niesen, F.H.1
Berglund, H.2
Vedadi, M.3
-
42
-
-
48849113878
-
Comparative protein structure modeling using MODELLER
-
Chapter 2, Unit 2 9
-
Eswar N, Webb B, Marti-Renom MA, Madhusudhan MS, Eramian D, Shen MY, et al. Comparative protein structure modeling using MODELLER. Curr Protoc Protein Sci 2007 Chapter 2, Unit 2 9.
-
(2007)
Curr Protoc Protein Sci
-
-
Eswar, N.1
Webb, B.2
Marti-Renom, M.A.3
Madhusudhan, M.S.4
Eramian, D.5
Shen, M.Y.6
|