-
1
-
-
0033568606
-
The Escherichia coli sigma(E)-dependent extracytoplasmic stress response is controlled by the regulated proteolysis of an anti-sigma factor
-
S.E. Ades, L.E. Connolly, B.M. Alba, and C.A. Gross The Escherichia coli sigma(E)-dependent extracytoplasmic stress response is controlled by the regulated proteolysis of an anti-sigma factor Genes Dev. 13 1999 2449 2461
-
(1999)
Genes Dev.
, vol.13
, pp. 2449-2461
-
-
Ades, S.E.1
Connolly, L.E.2
Alba, B.M.3
Gross, C.A.4
-
2
-
-
84902587889
-
In the sense of transcription regulation by G-quadruplexes: Asymmetric effects in sense and antisense strands
-
T. Agarwal, S. Roy, S. Kumar, T.K. Chakraborty, and S. Maiti In the sense of transcription regulation by G-quadruplexes: asymmetric effects in sense and antisense strands Biochemistry 53 2014 3711 3718
-
(2014)
Biochemistry
, vol.53
, pp. 3711-3718
-
-
Agarwal, T.1
Roy, S.2
Kumar, S.3
Chakraborty, T.K.4
Maiti, S.5
-
3
-
-
65549107862
-
Manganese import is a key element of the OxyR response to hydrogen peroxide in Escherichia coli
-
A. Anjem, S. Varghese, and J.A. Imlay Manganese import is a key element of the OxyR response to hydrogen peroxide in Escherichia coli Mol. Microbiol. 72 2009 844 858
-
(2009)
Mol. Microbiol.
, vol.72
, pp. 844-858
-
-
Anjem, A.1
Varghese, S.2
Imlay, J.A.3
-
4
-
-
67651207528
-
Differential biophysical behavior of human telomeric RNA and DNA quadruplex
-
A. Arora, and S. Maiti Differential biophysical behavior of human telomeric RNA and DNA quadruplex J. Phys. Chem. B 113 2009 10515 10520
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 10515-10520
-
-
Arora, A.1
Maiti, S.2
-
5
-
-
53549094135
-
Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties
-
A. Bacolla, J.E. Larson, J.R. Collins, J. Li, A. Milosavljevic, P.D. Stenson, D.N. Cooper, and R.D. Wells Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties Genome Res. 18 2008 1545 1553
-
(2008)
Genome Res.
, vol.18
, pp. 1545-1553
-
-
Bacolla, A.1
Larson, J.E.2
Collins, J.R.3
Li, J.4
Milosavljevic, A.5
Stenson, P.D.6
Cooper, D.N.7
Wells, R.D.8
-
6
-
-
84878830016
-
Exploring mRNA 3′-UTR G-quadruplexes: Evidence of roles in both alternative polyadenylation and mRNA shortening
-
J.D. Beaudoin, and J.P. Perreault Exploring mRNA 3′-UTR G-quadruplexes: evidence of roles in both alternative polyadenylation and mRNA shortening Nucleic Acids Res. 41 2013 5898 5911
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 5898-5911
-
-
Beaudoin, J.D.1
Perreault, J.P.2
-
7
-
-
84871728994
-
Genome-wide study predicts promoter-G4 DNA motifs regulate selective functions in bacteria: Radioresistance of D radiodurans involves G4 DNA-mediated regulation
-
N. Beaume, R. Pathak, V.K. Yadav, S. Kota, H.S. Misra, H.K. Gautam, and S. Chowdhury Genome-wide study predicts promoter-G4 DNA motifs regulate selective functions in bacteria: radioresistance of D. radiodurans involves G4 DNA-mediated regulation Nucleic Acids Res. 41 2013 76 89
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 76-89
-
-
Beaume, N.1
Pathak, R.2
Yadav, V.K.3
Kota, S.4
Misra, H.S.5
Gautam, H.K.6
Chowdhury, S.7
-
8
-
-
84890958553
-
Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells
-
G. Biffi, M. Di Antonio, D. Tannahill, and S. Balasubramanian Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells Nat. Chem. 6 2014 75 80
-
(2014)
Nat. Chem.
, vol.6
, pp. 75-80
-
-
Biffi, G.1
Di Antonio, M.2
Tannahill, D.3
Balasubramanian, S.4
-
9
-
-
84867744921
-
DNA secondary structures: Stability and function of G-quadruplex structures
-
M.L. Bochman, K. Paeschke, and V.A. Zakian DNA secondary structures: stability and function of G-quadruplex structures Nat. Rev. Genet. 13 2012 770 780
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 770-780
-
-
Bochman, M.L.1
Paeschke, K.2
Zakian, V.A.3
-
10
-
-
38849085810
-
A sequence-independent study of the influence of short loop lengths on the stability and topology of intramolecular DNA G-quadruplexes
-
A. Bugaut, and S. Balasubramanian A sequence-independent study of the influence of short loop lengths on the stability and topology of intramolecular DNA G-quadruplexes Biochemistry 47 2008 689 697
-
(2008)
Biochemistry
, vol.47
, pp. 689-697
-
-
Bugaut, A.1
Balasubramanian, S.2
-
11
-
-
33751020853
-
Quadruplex DNA: Sequence, topology and structure
-
S. Burge, G.N. Parkinson, P. Hazel, A.K. Todd, and S. Neidle Quadruplex DNA: sequence, topology and structure Nucleic Acids Res. 34 2006 5402 5415
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 5402-5415
-
-
Burge, S.1
Parkinson, G.N.2
Hazel, P.3
Todd, A.K.4
Neidle, S.5
-
12
-
-
68449102464
-
An alternative DNA structure is necessary for pilin antigenic variation in Neisseria gonorrhoeae
-
L.A. Cahoon, and H.S. Seifert An alternative DNA structure is necessary for pilin antigenic variation in Neisseria gonorrhoeae Science 325 2009 764 767
-
(2009)
Science
, vol.325
, pp. 764-767
-
-
Cahoon, L.A.1
Seifert, H.S.2
-
13
-
-
80051936225
-
Focusing homologous recombination: Pilin antigenic variation in the pathogenic Neisseria
-
L.A. Cahoon, and H.S. Seifert Focusing homologous recombination: pilin antigenic variation in the pathogenic Neisseria Mol. Microbiol. 81 2011 1136 1143
-
(2011)
Mol. Microbiol.
, vol.81
, pp. 1136-1143
-
-
Cahoon, L.A.1
Seifert, H.S.2
-
14
-
-
78049298053
-
G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae
-
J.A. Capra, K. Paeschke, M. Singh, and V.A. Zakian G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae PLoS Comput. Biol. 6 2010 e1000861
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. 1000861
-
-
Capra, J.A.1
Paeschke, K.2
Singh, M.3
Zakian, V.A.4
-
15
-
-
73349127073
-
Genome-wide colonization of gene regulatory elements by G4 DNA motifs
-
Z. Du, Y. Zhao, and N. Li Genome-wide colonization of gene regulatory elements by G4 DNA motifs Nucleic Acids Res. 37 2009 6784 6798
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 6784-6798
-
-
Du, Z.1
Zhao, Y.2
Li, N.3
-
16
-
-
40249084264
-
Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes
-
J. Eddy, and N. Maizels Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes Nucleic Acids Res. 36 2008 1321 1333
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 1321-1333
-
-
Eddy, J.1
Maizels, N.2
-
17
-
-
84889065973
-
Unusual -1 ribosomal frameshift caused by stable RNA G-quadruplex in open reading frame
-
T. Endoh, and N. Sugimoto Unusual -1 ribosomal frameshift caused by stable RNA G-quadruplex in open reading frame Anal. Chem. 85 2013 11435 11439
-
(2013)
Anal. Chem.
, vol.85
, pp. 11435-11439
-
-
Endoh, T.1
Sugimoto, N.2
-
18
-
-
84880208141
-
Stability of RNA quadruplex in open reading frame determines proteolysis of human estrogen receptor α
-
T. Endoh, Y. Kawasaki, and N. Sugimoto Stability of RNA quadruplex in open reading frame determines proteolysis of human estrogen receptor α Nucleic Acids Res. 41 2013 6222 6231
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 6222-6231
-
-
Endoh, T.1
Kawasaki, Y.2
Sugimoto, N.3
-
19
-
-
84877689596
-
Suppression of gene expression by G-quadruplexes in open reading frames depends on G-quadruplex stability
-
T. Endoh, Y. Kawasaki, and N. Sugimoto Suppression of gene expression by G-quadruplexes in open reading frames depends on G-quadruplex stability Angew. Chem. Int. Ed. Engl. 52 2013 5522 5526
-
(2013)
Angew. Chem. Int. Ed. Engl.
, vol.52
, pp. 5522-5526
-
-
Endoh, T.1
Kawasaki, Y.2
Sugimoto, N.3
-
20
-
-
84886315257
-
Translational halt during elongation caused by G-quadruplex formed by mRNA
-
T. Endoh, Y. Kawasaki, and N. Sugimoto Translational halt during elongation caused by G-quadruplex formed by mRNA Methods 64 2013 73 78
-
(2013)
Methods
, vol.64
, pp. 73-78
-
-
Endoh, T.1
Kawasaki, Y.2
Sugimoto, N.3
-
21
-
-
85005627207
-
Cation transport in Escherichia coli: V. Regulation of cation content
-
W. Epstein, and S.G. Schultz Cation transport in Escherichia coli: V. Regulation of cation content J. Gen. Physiol. 49 1965 221 234
-
(1965)
J. Gen. Physiol.
, vol.49
, pp. 221-234
-
-
Epstein, W.1
Schultz, S.G.2
-
22
-
-
84895827954
-
Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites
-
A. Espah Borujeni, A.S. Channarasappa, and H.M. Salis Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites Nucleic Acids Res. 42 2014 2646 2659
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 2646-2659
-
-
Espah Borujeni, A.1
Channarasappa, A.S.2
Salis, H.M.3
-
24
-
-
84866307448
-
Comparative investigation of the genomic regions involved in antigenic variation of the TprK antigen among treponemal species, subspecies, and strains
-
L. Giacani, S.L. Brandt, M. Puray-Chavez, T.B. Reid, C. Godornes, B.J. Molini, M. Benzler, J.S. Hartig, S.A. Lukehart, and A. Centurion-Lara Comparative investigation of the genomic regions involved in antigenic variation of the TprK antigen among treponemal species, subspecies, and strains J. Bacteriol. 194 2012 4208 4225
-
(2012)
J. Bacteriol.
, vol.194
, pp. 4208-4225
-
-
Giacani, L.1
Brandt, S.L.2
Puray-Chavez, M.3
Reid, T.B.4
Godornes, C.5
Molini, B.J.6
Benzler, M.7
Hartig, J.S.8
Lukehart, S.A.9
Centurion-Lara, A.10
-
25
-
-
73649123210
-
The cspA mRNA is a thermosensor that modulates translation of the cold-shock protein CspA
-
A.M. Giuliodori, F. Di Pietro, S. Marzi, B. Masquida, R. Wagner, P. Romby, C.O. Gualerzi, and C.L. Pon The cspA mRNA is a thermosensor that modulates translation of the cold-shock protein CspA Mol. Cell 37 2010 21 33
-
(2010)
Mol. Cell
, vol.37
, pp. 21-33
-
-
Giuliodori, A.M.1
Di Pietro, F.2
Marzi, S.3
Masquida, B.4
Wagner, R.5
Romby, P.6
Gualerzi, C.O.7
Pon, C.L.8
-
26
-
-
0029018327
-
Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter
-
L.M. Guzman, D. Belin, M.J. Carson, and J. Beckwith Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter J. Bacteriol. 177 1995 4121 4130
-
(1995)
J. Bacteriol.
, vol.177
, pp. 4121-4130
-
-
Guzman, L.M.1
Belin, D.2
Carson, M.J.3
Beckwith, J.4
-
27
-
-
73349103817
-
Predictable suppression of gene expression by 5′-UTR-based RNA quadruplexes
-
K. Halder, M. Wieland, and J.S. Hartig Predictable suppression of gene expression by 5′-UTR-based RNA quadruplexes Nucleic Acids Res. 37 2009 6811 6817
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 6811-6817
-
-
Halder, K.1
Wieland, M.2
Hartig, J.S.3
-
28
-
-
84865090219
-
Reporter assays for studying quadruplex nucleic acids
-
K. Halder, M. Benzler, and J.S. Hartig Reporter assays for studying quadruplex nucleic acids Methods 57 2012 115 121
-
(2012)
Methods
, vol.57
, pp. 115-121
-
-
Halder, K.1
Benzler, M.2
Hartig, J.S.3
-
29
-
-
84857961888
-
Bisquinolinium compounds induce quadruplex-specific transcriptome changes in HeLa S3 cell lines
-
R. Halder, J.F. Riou, M.P. Teulade-Fichou, T. Frickey, and J.S. Hartig Bisquinolinium compounds induce quadruplex-specific transcriptome changes in HeLa S3 cell lines BMC Res. Notes 5 2012 138
-
(2012)
BMC Res. Notes
, vol.5
, pp. 138
-
-
Halder, R.1
Riou, J.F.2
Teulade-Fichou, M.P.3
Frickey, T.4
Hartig, J.S.5
-
30
-
-
0033034413
-
High affinity interactions of nucleolin with G-G-paired rDNA
-
L.A. Hanakahi, H. Sun, and N. Maizels High affinity interactions of nucleolin with G-G-paired rDNA J. Biol. Chem. 274 1999 15908 15912
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 15908-15912
-
-
Hanakahi, L.A.1
Sun, H.2
Maizels, N.3
-
31
-
-
38349095525
-
Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae
-
S.G. Hershman, Q. Chen, J.Y. Lee, M.L. Kozak, P. Yue, L.S. Wang, and F.B. Johnson Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae Nucleic Acids Res. 36 2008 144 156
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 144-156
-
-
Hershman, S.G.1
Chen, Q.2
Lee, J.Y.3
Kozak, M.L.4
Yue, P.5
Wang, L.S.6
Johnson, F.B.7
-
32
-
-
52649171469
-
General stress response signalling: Unwrapping transcription complexes by DNA relaxation via the sigma38 C-terminal domain
-
Y.X. Huo, A.Z. Rosenthal, and J.D. Gralla General stress response signalling: unwrapping transcription complexes by DNA relaxation via the sigma38 C-terminal domain Mol. Microbiol. 70 2008 369 378
-
(2008)
Mol. Microbiol.
, vol.70
, pp. 369-378
-
-
Huo, Y.X.1
Rosenthal, A.Z.2
Gralla, J.D.3
-
33
-
-
45749103733
-
Four-stranded nucleic acids: Structure, function and targeting of G-quadruplexes
-
J.L. Huppert Four-stranded nucleic acids: structure, function and targeting of G-quadruplexes Chem. Soc. Rev. 37 2008 1375 1384
-
(2008)
Chem. Soc. Rev.
, vol.37
, pp. 1375-1384
-
-
Huppert, J.L.1
-
34
-
-
77955834769
-
Structure, location and interactions of G-quadruplexes
-
J.L. Huppert Structure, location and interactions of G-quadruplexes FEBS J. 277 2010 3452 3458
-
(2010)
FEBS J.
, vol.277
, pp. 3452-3458
-
-
Huppert, J.L.1
-
35
-
-
20144364292
-
Prevalence of quadruplexes in the human genome
-
J.L. Huppert, and S. Balasubramanian Prevalence of quadruplexes in the human genome Nucleic Acids Res. 33 2005 2908 2916
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2908-2916
-
-
Huppert, J.L.1
Balasubramanian, S.2
-
36
-
-
33846928449
-
G-quadruplexes in promoters throughout the human genome
-
J.L. Huppert, and S. Balasubramanian G-quadruplexes in promoters throughout the human genome Nucleic Acids Res. 35 2007 406 413
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 406-413
-
-
Huppert, J.L.1
Balasubramanian, S.2
-
38
-
-
69949186768
-
A comparison of DNA and RNA quadruplex structures and stabilities
-
A. Joachimi, A. Benz, and J.S. Hartig A comparison of DNA and RNA quadruplex structures and stabilities Bioorg. Med. Chem. 17 2009 6811 6815
-
(2009)
Bioorg. Med. Chem.
, vol.17
, pp. 6811-6815
-
-
Joachimi, A.1
Benz, A.2
Hartig, J.S.3
-
39
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
M. Kanehisa, and S. Goto KEGG: kyoto encyclopedia of genes and genomes Nucleic Acids Res. 28 2000 27 30
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
40
-
-
84891760956
-
Data, information, knowledge and principle: Back to metabolism in KEGG
-
M. Kanehisa, S. Goto, Y. Sato, M. Kawashima, M. Furumichi, and M. Tanabe Data, information, knowledge and principle: back to metabolism in KEGG Nucleic Acids Res. 42 2014 D199 D205
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 199-D205
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Kawashima, M.4
Furumichi, M.5
Tanabe, M.6
-
41
-
-
84878607202
-
An engineered small RNA-mediated genetic switch based on a ribozyme expression platform
-
B. Klauser, and J.S. Hartig An engineered small RNA-mediated genetic switch based on a ribozyme expression platform Nucleic Acids Res. 41 2013 5542 5552
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 5542-5552
-
-
Klauser, B.1
Hartig, J.S.2
-
42
-
-
14544308803
-
AU-rich sequences within 5′ untranslated leaders enhance translation and stabilize mRNA in Escherichia coli
-
A.V. Komarova, L.S. Tchufistova, M. Dreyfus, and I.V. Boni AU-rich sequences within 5′ untranslated leaders enhance translation and stabilize mRNA in Escherichia coli J. Bacteriol. 187 2005 1344 1349
-
(2005)
J. Bacteriol.
, vol.187
, pp. 1344-1349
-
-
Komarova, A.V.1
Tchufistova, L.S.2
Dreyfus, M.3
Boni, I.V.4
-
44
-
-
0023515304
-
Arabinose-induced binding of AraC protein to araI2 activates the araBAD operon promoter
-
N. Lee, C. Francklyn, and E.P. Hamilton Arabinose-induced binding of AraC protein to araI2 activates the araBAD operon promoter Proc. Natl. Acad. Sci. USA 84 1987 8814 8818
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 8814-8818
-
-
Lee, N.1
Francklyn, C.2
Hamilton, E.P.3
-
47
-
-
79959360447
-
A critical role of downstream RNA polymerase-promoter interactions in the formation of initiation complex
-
V. Mekler, L. Minakhin, and K. Severinov A critical role of downstream RNA polymerase-promoter interactions in the formation of initiation complex J. Biol. Chem. 286 2011 22600 22608
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 22600-22608
-
-
Mekler, V.1
Minakhin, L.2
Severinov, K.3
-
48
-
-
84899493945
-
G-quadruplexes regulate Epstein-Barr virus-encoded nuclear antigen 1 mRNA translation
-
P. Murat, J. Zhong, L. Lekieffre, N.P. Cowieson, J.L. Clancy, T. Preiss, S. Balasubramanian, R. Khanna, and J. Tellam G-quadruplexes regulate Epstein-Barr virus-encoded nuclear antigen 1 mRNA translation Nat. Chem. Biol. 10 2014 358 364
-
(2014)
Nat. Chem. Biol.
, vol.10
, pp. 358-364
-
-
Murat, P.1
Zhong, J.2
Lekieffre, L.3
Cowieson, N.P.4
Clancy, J.L.5
Preiss, T.6
Balasubramanian, S.7
Khanna, R.8
Tellam, J.9
-
49
-
-
73149097448
-
The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts
-
S. Nakken, T. Rognes, and E. Hovig The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts Nucleic Acids Res. 37 2009 5749 5756
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 5749-5756
-
-
Nakken, S.1
Rognes, T.2
Hovig, E.3
-
50
-
-
0030582731
-
How AraC interacts specifically with its target DNAs
-
P. Niland, R. Hühne, and B. Müller-Hill How AraC interacts specifically with its target DNAs J. Mol. Biol. 264 1996 667 674
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 667-674
-
-
Niland, P.1
Hühne, R.2
Müller-Hill, B.3
-
51
-
-
84883182887
-
A dynamic G-quadruplex region regulates the HIV-1 long terminal repeat promoter
-
R. Perrone, M. Nadai, I. Frasson, J.A. Poe, E. Butovskaya, T.E. Smithgall, M. Palumbo, G. Palù, and S.N. Richter A dynamic G-quadruplex region regulates the HIV-1 long terminal repeat promoter J. Med. Chem. 56 2013 6521 6530
-
(2013)
J. Med. Chem.
, vol.56
, pp. 6521-6530
-
-
Perrone, R.1
Nadai, M.2
Frasson, I.3
Poe, J.A.4
Butovskaya, E.5
Smithgall, T.E.6
Palumbo, M.7
Palù, G.8
Richter, S.N.9
-
52
-
-
33745121203
-
Genome-wide prediction of G4 DNA as regulatory motifs: Role in Escherichia coli global regulation
-
P. Rawal, V.B. Kummarasetti, J. Ravindran, N. Kumar, K. Halder, R. Sharma, M. Mukerji, S.K. Das, and S. Chowdhury Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation Genome Res. 16 2006 644 655
-
(2006)
Genome Res.
, vol.16
, pp. 644-655
-
-
Rawal, P.1
Kummarasetti, V.B.2
Ravindran, J.3
Kumar, N.4
Halder, K.5
Sharma, R.6
Mukerji, M.7
Das, S.K.8
Chowdhury, S.9
-
53
-
-
84901838782
-
+ selectivity and unique structural polymorphism
-
+ selectivity and unique structural polymorphism Chem. Sci. 5 2014 2809 2818
-
(2014)
Chem. Sci.
, vol.5
, pp. 2809-2818
-
-
Rehm, C.1
Holder, I.T.2
Groß, A.3
Wojciechowski, F.4
Urban, M.5
Sinn, M.6
Drescher, M.7
Hartig, J.S.8
-
54
-
-
0030576519
-
Base-specific recognition of the nontemplate strand of promoter DNA by E coli RNA polymerase
-
C.W. Roberts, and J.W. Roberts Base-specific recognition of the nontemplate strand of promoter DNA by E. coli RNA polymerase Cell 86 1996 495 501
-
(1996)
Cell
, vol.86
, pp. 495-501
-
-
Roberts, C.W.1
Roberts, J.W.2
-
55
-
-
14844353406
-
The effect of chemical modifications on the thermal stability of different G-quadruplex-forming oligonucleotides
-
B. Saccà, L. Lacroix, and J.L. Mergny The effect of chemical modifications on the thermal stability of different G-quadruplex-forming oligonucleotides Nucleic Acids Res. 33 2005 1182 1192
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 1182-1192
-
-
Saccà, B.1
Lacroix, L.2
Mergny, J.L.3
-
56
-
-
70349964350
-
Automated design of synthetic ribosome binding sites to control protein expression
-
H.M. Salis, E.A. Mirsky, and C.A. Voigt Automated design of synthetic ribosome binding sites to control protein expression Nat. Biotechnol. 27 2009 946 950
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 946-950
-
-
Salis, H.M.1
Mirsky, E.A.2
Voigt, C.A.3
-
58
-
-
84873559405
-
Microsatellite tandem repeats are abundant in human promoters and are associated with regulatory elements
-
S. Sawaya, A. Bagshaw, E. Buschiazzo, P. Kumar, S. Chowdhury, M.A. Black, and N. Gemmell Microsatellite tandem repeats are abundant in human promoters and are associated with regulatory elements PLoS ONE 8 2013 e54710
-
(2013)
PLoS ONE
, vol.8
, pp. 54710
-
-
Sawaya, S.1
Bagshaw, A.2
Buschiazzo, E.3
Kumar, P.4
Chowdhury, S.5
Black, M.A.6
Gemmell, N.7
-
59
-
-
84860176878
-
Endogenous protein S-nitrosylation in E coli: Regulation by OxyR
-
D. Seth, A. Hausladen, Y.J. Wang, and J.S. Stamler Endogenous protein S-nitrosylation in E. coli: regulation by OxyR Science 336 2012 470 473
-
(2012)
Science
, vol.336
, pp. 470-473
-
-
Seth, D.1
Hausladen, A.2
Wang, Y.J.3
Stamler, J.S.4
-
60
-
-
0037015078
-
Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription
-
A. Siddiqui-Jain, C.L. Grand, D.J. Bearss, and L.H. Hurley Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription Proc. Natl. Acad. Sci. USA 99 2002 11593 11598
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 11593-11598
-
-
Siddiqui-Jain, A.1
Grand, C.L.2
Bearss, D.J.3
Hurley, L.H.4
-
61
-
-
52149112910
-
Structure of the 30S translation initiation complex
-
A. Simonetti, S. Marzi, A.G. Myasnikov, A. Fabbretti, M. Yusupov, C.O. Gualerzi, and B.P. Klaholz Structure of the 30S translation initiation complex Nature 455 2008 416 420
-
(2008)
Nature
, vol.455
, pp. 416-420
-
-
Simonetti, A.1
Marzi, S.2
Myasnikov, A.G.3
Fabbretti, A.4
Yusupov, M.5
Gualerzi, C.O.6
Klaholz, B.P.7
-
62
-
-
52449093394
-
Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species
-
A. Verma, K. Halder, R. Halder, V.K. Yadav, P. Rawal, R.K. Thakur, F. Mohd, A. Sharma, and S. Chowdhury Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species J. Med. Chem. 51 2008 5641 5649
-
(2008)
J. Med. Chem.
, vol.51
, pp. 5641-5649
-
-
Verma, A.1
Halder, K.2
Halder, R.3
Yadav, V.K.4
Rawal, P.5
Thakur, R.K.6
Mohd, F.7
Sharma, A.8
Chowdhury, S.9
-
63
-
-
67249138595
-
Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells
-
A. Verma, V.K. Yadav, R. Basundra, A. Kumar, and S. Chowdhury Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells Nucleic Acids Res. 37 2009 4194 4204
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 4194-4204
-
-
Verma, A.1
Yadav, V.K.2
Basundra, R.3
Kumar, A.4
Chowdhury, S.5
-
64
-
-
84874561094
-
Suggested role for G4 DNA in recombinational switching at the antigenic variation locus of the Lyme disease spirochete
-
R. Walia, and G. Chaconas Suggested role for G4 DNA in recombinational switching at the antigenic variation locus of the Lyme disease spirochete PLoS ONE 8 2013 e57792
-
(2013)
PLoS ONE
, vol.8
, pp. 57792
-
-
Walia, R.1
Chaconas, G.2
-
65
-
-
0027918585
-
Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex
-
Y. Wang, and D.J. Patel Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex Structure 1 1993 263 282
-
(1993)
Structure
, vol.1
, pp. 263-282
-
-
Wang, Y.1
Patel, D.J.2
-
66
-
-
34447541999
-
RNA quadruplex-based modulation of gene expression
-
M. Wieland, and J.S. Hartig RNA quadruplex-based modulation of gene expression Chem. Biol. 14 2007 757 763
-
(2007)
Chem. Biol.
, vol.14
, pp. 757-763
-
-
Wieland, M.1
Hartig, J.S.2
-
67
-
-
65249122814
-
Artificial ribozyme switches containing natural riboswitch aptamer domains
-
M. Wieland, A. Benz, B. Klauser, and J.S. Hartig Artificial ribozyme switches containing natural riboswitch aptamer domains Angew. Chem. Int. Ed. Engl. 48 2009 2715 2718
-
(2009)
Angew. Chem. Int. Ed. Engl.
, vol.48
, pp. 2715-2718
-
-
Wieland, M.1
Benz, A.2
Klauser, B.3
Hartig, J.S.4
-
68
-
-
0037206833
-
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
-
W. Winkler, A. Nahvi, and R.R. Breaker Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression Nature 419 2002 952 956
-
(2002)
Nature
, vol.419
, pp. 952-956
-
-
Winkler, W.1
Nahvi, A.2
Breaker, R.R.3
-
69
-
-
38549092075
-
QuadBase: Genome-wide database of G4 DNA - Occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes
-
V.K. Yadav, J.K. Abraham, P. Mani, R. Kulshrestha, and S. Chowdhury QuadBase: genome-wide database of G4 DNA - occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes Nucleic Acids Res. 36 2008 D381 D385
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 381-D385
-
-
Yadav, V.K.1
Abraham, J.K.2
Mani, P.3
Kulshrestha, R.4
Chowdhury, S.5
-
70
-
-
84896714434
-
Stimulation of ribosomal frameshifting by RNA G-quadruplex structures
-
C.H. Yu, M.P. Teulade-Fichou, and R.C. Olsthoorn Stimulation of ribosomal frameshifting by RNA G-quadruplex structures Nucleic Acids Res. 42 2014 1887 1892
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 1887-1892
-
-
Yu, C.H.1
Teulade-Fichou, M.P.2
Olsthoorn, R.C.3
-
72
-
-
77952870567
-
Monomorphic RNA G-quadruplex and polymorphic DNA G-quadruplex structures responding to cellular environmental factors
-
D.H. Zhang, T. Fujimoto, S. Saxena, H.Q. Yu, D. Miyoshi, and N. Sugimoto Monomorphic RNA G-quadruplex and polymorphic DNA G-quadruplex structures responding to cellular environmental factors Biochemistry 49 2010 4554 4563
-
(2010)
Biochemistry
, vol.49
, pp. 4554-4563
-
-
Zhang, D.H.1
Fujimoto, T.2
Saxena, S.3
Yu, H.Q.4
Miyoshi, D.5
Sugimoto, N.6
-
73
-
-
80051739988
-
A sequence-independent analysis of the loop length dependence of intramolecular RNA G-quadruplex stability and topology
-
A.Y. Zhang, A. Bugaut, and S. Balasubramanian A sequence-independent analysis of the loop length dependence of intramolecular RNA G-quadruplex stability and topology Biochemistry 50 2011 7251 7258
-
(2011)
Biochemistry
, vol.50
, pp. 7251-7258
-
-
Zhang, A.Y.1
Bugaut, A.2
Balasubramanian, S.3
-
74
-
-
84881504588
-
DNA G-quadruplex formation in response to remote downstream transcription activity: Long-range sensing and signal transducing in DNA double helix
-
C. Zhang, H.H. Liu, K.W. Zheng, Y.H. Hao, and Z. Tan DNA G-quadruplex formation in response to remote downstream transcription activity: long-range sensing and signal transducing in DNA double helix Nucleic Acids Res. 41 2013 7144 7152
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 7144-7152
-
-
Zhang, C.1
Liu, H.H.2
Zheng, K.W.3
Hao, Y.H.4
Tan, Z.5
-
75
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
M. Zuker Mfold web server for nucleic acid folding and hybridization prediction Nucleic Acids Res. 31 2003 3406 3415.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|