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Volumn 21, Issue 11, 2014, Pages 1511-1521

A matter of location: Influence of G-quadruplexes on escherichia coli gene expression

Author keywords

[No Author keywords available]

Indexed keywords

GUANINE QUADRUPLEX; 3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ESCHERICHIA COLI PROTEIN; MESSENGER RNA;

EID: 84911496603     PISSN: 10745521     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chembiol.2014.09.014     Document Type: Article
Times cited : (77)

References (75)
  • 1
    • 0033568606 scopus 로고    scopus 로고
    • The Escherichia coli sigma(E)-dependent extracytoplasmic stress response is controlled by the regulated proteolysis of an anti-sigma factor
    • S.E. Ades, L.E. Connolly, B.M. Alba, and C.A. Gross The Escherichia coli sigma(E)-dependent extracytoplasmic stress response is controlled by the regulated proteolysis of an anti-sigma factor Genes Dev. 13 1999 2449 2461
    • (1999) Genes Dev. , vol.13 , pp. 2449-2461
    • Ades, S.E.1    Connolly, L.E.2    Alba, B.M.3    Gross, C.A.4
  • 2
    • 84902587889 scopus 로고    scopus 로고
    • In the sense of transcription regulation by G-quadruplexes: Asymmetric effects in sense and antisense strands
    • T. Agarwal, S. Roy, S. Kumar, T.K. Chakraborty, and S. Maiti In the sense of transcription regulation by G-quadruplexes: asymmetric effects in sense and antisense strands Biochemistry 53 2014 3711 3718
    • (2014) Biochemistry , vol.53 , pp. 3711-3718
    • Agarwal, T.1    Roy, S.2    Kumar, S.3    Chakraborty, T.K.4    Maiti, S.5
  • 3
    • 65549107862 scopus 로고    scopus 로고
    • Manganese import is a key element of the OxyR response to hydrogen peroxide in Escherichia coli
    • A. Anjem, S. Varghese, and J.A. Imlay Manganese import is a key element of the OxyR response to hydrogen peroxide in Escherichia coli Mol. Microbiol. 72 2009 844 858
    • (2009) Mol. Microbiol. , vol.72 , pp. 844-858
    • Anjem, A.1    Varghese, S.2    Imlay, J.A.3
  • 4
    • 67651207528 scopus 로고    scopus 로고
    • Differential biophysical behavior of human telomeric RNA and DNA quadruplex
    • A. Arora, and S. Maiti Differential biophysical behavior of human telomeric RNA and DNA quadruplex J. Phys. Chem. B 113 2009 10515 10520
    • (2009) J. Phys. Chem. B , vol.113 , pp. 10515-10520
    • Arora, A.1    Maiti, S.2
  • 6
    • 84878830016 scopus 로고    scopus 로고
    • Exploring mRNA 3′-UTR G-quadruplexes: Evidence of roles in both alternative polyadenylation and mRNA shortening
    • J.D. Beaudoin, and J.P. Perreault Exploring mRNA 3′-UTR G-quadruplexes: evidence of roles in both alternative polyadenylation and mRNA shortening Nucleic Acids Res. 41 2013 5898 5911
    • (2013) Nucleic Acids Res. , vol.41 , pp. 5898-5911
    • Beaudoin, J.D.1    Perreault, J.P.2
  • 7
    • 84871728994 scopus 로고    scopus 로고
    • Genome-wide study predicts promoter-G4 DNA motifs regulate selective functions in bacteria: Radioresistance of D radiodurans involves G4 DNA-mediated regulation
    • N. Beaume, R. Pathak, V.K. Yadav, S. Kota, H.S. Misra, H.K. Gautam, and S. Chowdhury Genome-wide study predicts promoter-G4 DNA motifs regulate selective functions in bacteria: radioresistance of D. radiodurans involves G4 DNA-mediated regulation Nucleic Acids Res. 41 2013 76 89
    • (2013) Nucleic Acids Res. , vol.41 , pp. 76-89
    • Beaume, N.1    Pathak, R.2    Yadav, V.K.3    Kota, S.4    Misra, H.S.5    Gautam, H.K.6    Chowdhury, S.7
  • 8
    • 84890958553 scopus 로고    scopus 로고
    • Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells
    • G. Biffi, M. Di Antonio, D. Tannahill, and S. Balasubramanian Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells Nat. Chem. 6 2014 75 80
    • (2014) Nat. Chem. , vol.6 , pp. 75-80
    • Biffi, G.1    Di Antonio, M.2    Tannahill, D.3    Balasubramanian, S.4
  • 9
    • 84867744921 scopus 로고    scopus 로고
    • DNA secondary structures: Stability and function of G-quadruplex structures
    • M.L. Bochman, K. Paeschke, and V.A. Zakian DNA secondary structures: stability and function of G-quadruplex structures Nat. Rev. Genet. 13 2012 770 780
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 770-780
    • Bochman, M.L.1    Paeschke, K.2    Zakian, V.A.3
  • 10
    • 38849085810 scopus 로고    scopus 로고
    • A sequence-independent study of the influence of short loop lengths on the stability and topology of intramolecular DNA G-quadruplexes
    • A. Bugaut, and S. Balasubramanian A sequence-independent study of the influence of short loop lengths on the stability and topology of intramolecular DNA G-quadruplexes Biochemistry 47 2008 689 697
    • (2008) Biochemistry , vol.47 , pp. 689-697
    • Bugaut, A.1    Balasubramanian, S.2
  • 12
    • 68449102464 scopus 로고    scopus 로고
    • An alternative DNA structure is necessary for pilin antigenic variation in Neisseria gonorrhoeae
    • L.A. Cahoon, and H.S. Seifert An alternative DNA structure is necessary for pilin antigenic variation in Neisseria gonorrhoeae Science 325 2009 764 767
    • (2009) Science , vol.325 , pp. 764-767
    • Cahoon, L.A.1    Seifert, H.S.2
  • 13
    • 80051936225 scopus 로고    scopus 로고
    • Focusing homologous recombination: Pilin antigenic variation in the pathogenic Neisseria
    • L.A. Cahoon, and H.S. Seifert Focusing homologous recombination: pilin antigenic variation in the pathogenic Neisseria Mol. Microbiol. 81 2011 1136 1143
    • (2011) Mol. Microbiol. , vol.81 , pp. 1136-1143
    • Cahoon, L.A.1    Seifert, H.S.2
  • 14
    • 78049298053 scopus 로고    scopus 로고
    • G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae
    • J.A. Capra, K. Paeschke, M. Singh, and V.A. Zakian G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae PLoS Comput. Biol. 6 2010 e1000861
    • (2010) PLoS Comput. Biol. , vol.6 , pp. 1000861
    • Capra, J.A.1    Paeschke, K.2    Singh, M.3    Zakian, V.A.4
  • 15
    • 73349127073 scopus 로고    scopus 로고
    • Genome-wide colonization of gene regulatory elements by G4 DNA motifs
    • Z. Du, Y. Zhao, and N. Li Genome-wide colonization of gene regulatory elements by G4 DNA motifs Nucleic Acids Res. 37 2009 6784 6798
    • (2009) Nucleic Acids Res. , vol.37 , pp. 6784-6798
    • Du, Z.1    Zhao, Y.2    Li, N.3
  • 16
    • 40249084264 scopus 로고    scopus 로고
    • Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes
    • J. Eddy, and N. Maizels Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes Nucleic Acids Res. 36 2008 1321 1333
    • (2008) Nucleic Acids Res. , vol.36 , pp. 1321-1333
    • Eddy, J.1    Maizels, N.2
  • 17
    • 84889065973 scopus 로고    scopus 로고
    • Unusual -1 ribosomal frameshift caused by stable RNA G-quadruplex in open reading frame
    • T. Endoh, and N. Sugimoto Unusual -1 ribosomal frameshift caused by stable RNA G-quadruplex in open reading frame Anal. Chem. 85 2013 11435 11439
    • (2013) Anal. Chem. , vol.85 , pp. 11435-11439
    • Endoh, T.1    Sugimoto, N.2
  • 18
    • 84880208141 scopus 로고    scopus 로고
    • Stability of RNA quadruplex in open reading frame determines proteolysis of human estrogen receptor α
    • T. Endoh, Y. Kawasaki, and N. Sugimoto Stability of RNA quadruplex in open reading frame determines proteolysis of human estrogen receptor α Nucleic Acids Res. 41 2013 6222 6231
    • (2013) Nucleic Acids Res. , vol.41 , pp. 6222-6231
    • Endoh, T.1    Kawasaki, Y.2    Sugimoto, N.3
  • 19
    • 84877689596 scopus 로고    scopus 로고
    • Suppression of gene expression by G-quadruplexes in open reading frames depends on G-quadruplex stability
    • T. Endoh, Y. Kawasaki, and N. Sugimoto Suppression of gene expression by G-quadruplexes in open reading frames depends on G-quadruplex stability Angew. Chem. Int. Ed. Engl. 52 2013 5522 5526
    • (2013) Angew. Chem. Int. Ed. Engl. , vol.52 , pp. 5522-5526
    • Endoh, T.1    Kawasaki, Y.2    Sugimoto, N.3
  • 20
    • 84886315257 scopus 로고    scopus 로고
    • Translational halt during elongation caused by G-quadruplex formed by mRNA
    • T. Endoh, Y. Kawasaki, and N. Sugimoto Translational halt during elongation caused by G-quadruplex formed by mRNA Methods 64 2013 73 78
    • (2013) Methods , vol.64 , pp. 73-78
    • Endoh, T.1    Kawasaki, Y.2    Sugimoto, N.3
  • 21
    • 85005627207 scopus 로고
    • Cation transport in Escherichia coli: V. Regulation of cation content
    • W. Epstein, and S.G. Schultz Cation transport in Escherichia coli: V. Regulation of cation content J. Gen. Physiol. 49 1965 221 234
    • (1965) J. Gen. Physiol. , vol.49 , pp. 221-234
    • Epstein, W.1    Schultz, S.G.2
  • 22
    • 84895827954 scopus 로고    scopus 로고
    • Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites
    • A. Espah Borujeni, A.S. Channarasappa, and H.M. Salis Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites Nucleic Acids Res. 42 2014 2646 2659
    • (2014) Nucleic Acids Res. , vol.42 , pp. 2646-2659
    • Espah Borujeni, A.1    Channarasappa, A.S.2    Salis, H.M.3
  • 26
    • 0029018327 scopus 로고
    • Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter
    • L.M. Guzman, D. Belin, M.J. Carson, and J. Beckwith Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter J. Bacteriol. 177 1995 4121 4130
    • (1995) J. Bacteriol. , vol.177 , pp. 4121-4130
    • Guzman, L.M.1    Belin, D.2    Carson, M.J.3    Beckwith, J.4
  • 27
    • 73349103817 scopus 로고    scopus 로고
    • Predictable suppression of gene expression by 5′-UTR-based RNA quadruplexes
    • K. Halder, M. Wieland, and J.S. Hartig Predictable suppression of gene expression by 5′-UTR-based RNA quadruplexes Nucleic Acids Res. 37 2009 6811 6817
    • (2009) Nucleic Acids Res. , vol.37 , pp. 6811-6817
    • Halder, K.1    Wieland, M.2    Hartig, J.S.3
  • 28
    • 84865090219 scopus 로고    scopus 로고
    • Reporter assays for studying quadruplex nucleic acids
    • K. Halder, M. Benzler, and J.S. Hartig Reporter assays for studying quadruplex nucleic acids Methods 57 2012 115 121
    • (2012) Methods , vol.57 , pp. 115-121
    • Halder, K.1    Benzler, M.2    Hartig, J.S.3
  • 29
    • 84857961888 scopus 로고    scopus 로고
    • Bisquinolinium compounds induce quadruplex-specific transcriptome changes in HeLa S3 cell lines
    • R. Halder, J.F. Riou, M.P. Teulade-Fichou, T. Frickey, and J.S. Hartig Bisquinolinium compounds induce quadruplex-specific transcriptome changes in HeLa S3 cell lines BMC Res. Notes 5 2012 138
    • (2012) BMC Res. Notes , vol.5 , pp. 138
    • Halder, R.1    Riou, J.F.2    Teulade-Fichou, M.P.3    Frickey, T.4    Hartig, J.S.5
  • 30
    • 0033034413 scopus 로고    scopus 로고
    • High affinity interactions of nucleolin with G-G-paired rDNA
    • L.A. Hanakahi, H. Sun, and N. Maizels High affinity interactions of nucleolin with G-G-paired rDNA J. Biol. Chem. 274 1999 15908 15912
    • (1999) J. Biol. Chem. , vol.274 , pp. 15908-15912
    • Hanakahi, L.A.1    Sun, H.2    Maizels, N.3
  • 31
    • 38349095525 scopus 로고    scopus 로고
    • Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae
    • S.G. Hershman, Q. Chen, J.Y. Lee, M.L. Kozak, P. Yue, L.S. Wang, and F.B. Johnson Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae Nucleic Acids Res. 36 2008 144 156
    • (2008) Nucleic Acids Res. , vol.36 , pp. 144-156
    • Hershman, S.G.1    Chen, Q.2    Lee, J.Y.3    Kozak, M.L.4    Yue, P.5    Wang, L.S.6    Johnson, F.B.7
  • 32
    • 52649171469 scopus 로고    scopus 로고
    • General stress response signalling: Unwrapping transcription complexes by DNA relaxation via the sigma38 C-terminal domain
    • Y.X. Huo, A.Z. Rosenthal, and J.D. Gralla General stress response signalling: unwrapping transcription complexes by DNA relaxation via the sigma38 C-terminal domain Mol. Microbiol. 70 2008 369 378
    • (2008) Mol. Microbiol. , vol.70 , pp. 369-378
    • Huo, Y.X.1    Rosenthal, A.Z.2    Gralla, J.D.3
  • 33
    • 45749103733 scopus 로고    scopus 로고
    • Four-stranded nucleic acids: Structure, function and targeting of G-quadruplexes
    • J.L. Huppert Four-stranded nucleic acids: structure, function and targeting of G-quadruplexes Chem. Soc. Rev. 37 2008 1375 1384
    • (2008) Chem. Soc. Rev. , vol.37 , pp. 1375-1384
    • Huppert, J.L.1
  • 34
    • 77955834769 scopus 로고    scopus 로고
    • Structure, location and interactions of G-quadruplexes
    • J.L. Huppert Structure, location and interactions of G-quadruplexes FEBS J. 277 2010 3452 3458
    • (2010) FEBS J. , vol.277 , pp. 3452-3458
    • Huppert, J.L.1
  • 35
    • 20144364292 scopus 로고    scopus 로고
    • Prevalence of quadruplexes in the human genome
    • J.L. Huppert, and S. Balasubramanian Prevalence of quadruplexes in the human genome Nucleic Acids Res. 33 2005 2908 2916
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2908-2916
    • Huppert, J.L.1    Balasubramanian, S.2
  • 36
    • 33846928449 scopus 로고    scopus 로고
    • G-quadruplexes in promoters throughout the human genome
    • J.L. Huppert, and S. Balasubramanian G-quadruplexes in promoters throughout the human genome Nucleic Acids Res. 35 2007 406 413
    • (2007) Nucleic Acids Res. , vol.35 , pp. 406-413
    • Huppert, J.L.1    Balasubramanian, S.2
  • 38
    • 69949186768 scopus 로고    scopus 로고
    • A comparison of DNA and RNA quadruplex structures and stabilities
    • A. Joachimi, A. Benz, and J.S. Hartig A comparison of DNA and RNA quadruplex structures and stabilities Bioorg. Med. Chem. 17 2009 6811 6815
    • (2009) Bioorg. Med. Chem. , vol.17 , pp. 6811-6815
    • Joachimi, A.1    Benz, A.2    Hartig, J.S.3
  • 39
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • M. Kanehisa, and S. Goto KEGG: kyoto encyclopedia of genes and genomes Nucleic Acids Res. 28 2000 27 30
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 41
    • 84878607202 scopus 로고    scopus 로고
    • An engineered small RNA-mediated genetic switch based on a ribozyme expression platform
    • B. Klauser, and J.S. Hartig An engineered small RNA-mediated genetic switch based on a ribozyme expression platform Nucleic Acids Res. 41 2013 5542 5552
    • (2013) Nucleic Acids Res. , vol.41 , pp. 5542-5552
    • Klauser, B.1    Hartig, J.S.2
  • 42
    • 14544308803 scopus 로고    scopus 로고
    • AU-rich sequences within 5′ untranslated leaders enhance translation and stabilize mRNA in Escherichia coli
    • A.V. Komarova, L.S. Tchufistova, M. Dreyfus, and I.V. Boni AU-rich sequences within 5′ untranslated leaders enhance translation and stabilize mRNA in Escherichia coli J. Bacteriol. 187 2005 1344 1349
    • (2005) J. Bacteriol. , vol.187 , pp. 1344-1349
    • Komarova, A.V.1    Tchufistova, L.S.2    Dreyfus, M.3    Boni, I.V.4
  • 43
    • 84877768759 scopus 로고    scopus 로고
    • G-quadruplex structures are stable and detectable in human genomic DNA
    • E.Y. Lam, D. Beraldi, D. Tannahill, and S. Balasubramanian G-quadruplex structures are stable and detectable in human genomic DNA Nat. Commun. 4 2013 1796
    • (2013) Nat. Commun. , vol.4 , pp. 1796
    • Lam, E.Y.1    Beraldi, D.2    Tannahill, D.3    Balasubramanian, S.4
  • 44
    • 0023515304 scopus 로고
    • Arabinose-induced binding of AraC protein to araI2 activates the araBAD operon promoter
    • N. Lee, C. Francklyn, and E.P. Hamilton Arabinose-induced binding of AraC protein to araI2 activates the araBAD operon promoter Proc. Natl. Acad. Sci. USA 84 1987 8814 8818
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 8814-8818
    • Lee, N.1    Francklyn, C.2    Hamilton, E.P.3
  • 47
    • 79959360447 scopus 로고    scopus 로고
    • A critical role of downstream RNA polymerase-promoter interactions in the formation of initiation complex
    • V. Mekler, L. Minakhin, and K. Severinov A critical role of downstream RNA polymerase-promoter interactions in the formation of initiation complex J. Biol. Chem. 286 2011 22600 22608
    • (2011) J. Biol. Chem. , vol.286 , pp. 22600-22608
    • Mekler, V.1    Minakhin, L.2    Severinov, K.3
  • 49
    • 73149097448 scopus 로고    scopus 로고
    • The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts
    • S. Nakken, T. Rognes, and E. Hovig The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts Nucleic Acids Res. 37 2009 5749 5756
    • (2009) Nucleic Acids Res. , vol.37 , pp. 5749-5756
    • Nakken, S.1    Rognes, T.2    Hovig, E.3
  • 50
    • 0030582731 scopus 로고    scopus 로고
    • How AraC interacts specifically with its target DNAs
    • P. Niland, R. Hühne, and B. Müller-Hill How AraC interacts specifically with its target DNAs J. Mol. Biol. 264 1996 667 674
    • (1996) J. Mol. Biol. , vol.264 , pp. 667-674
    • Niland, P.1    Hühne, R.2    Müller-Hill, B.3
  • 54
    • 0030576519 scopus 로고    scopus 로고
    • Base-specific recognition of the nontemplate strand of promoter DNA by E coli RNA polymerase
    • C.W. Roberts, and J.W. Roberts Base-specific recognition of the nontemplate strand of promoter DNA by E. coli RNA polymerase Cell 86 1996 495 501
    • (1996) Cell , vol.86 , pp. 495-501
    • Roberts, C.W.1    Roberts, J.W.2
  • 55
    • 14844353406 scopus 로고    scopus 로고
    • The effect of chemical modifications on the thermal stability of different G-quadruplex-forming oligonucleotides
    • B. Saccà, L. Lacroix, and J.L. Mergny The effect of chemical modifications on the thermal stability of different G-quadruplex-forming oligonucleotides Nucleic Acids Res. 33 2005 1182 1192
    • (2005) Nucleic Acids Res. , vol.33 , pp. 1182-1192
    • Saccà, B.1    Lacroix, L.2    Mergny, J.L.3
  • 56
    • 70349964350 scopus 로고    scopus 로고
    • Automated design of synthetic ribosome binding sites to control protein expression
    • H.M. Salis, E.A. Mirsky, and C.A. Voigt Automated design of synthetic ribosome binding sites to control protein expression Nat. Biotechnol. 27 2009 946 950
    • (2009) Nat. Biotechnol. , vol.27 , pp. 946-950
    • Salis, H.M.1    Mirsky, E.A.2    Voigt, C.A.3
  • 58
    • 84873559405 scopus 로고    scopus 로고
    • Microsatellite tandem repeats are abundant in human promoters and are associated with regulatory elements
    • S. Sawaya, A. Bagshaw, E. Buschiazzo, P. Kumar, S. Chowdhury, M.A. Black, and N. Gemmell Microsatellite tandem repeats are abundant in human promoters and are associated with regulatory elements PLoS ONE 8 2013 e54710
    • (2013) PLoS ONE , vol.8 , pp. 54710
    • Sawaya, S.1    Bagshaw, A.2    Buschiazzo, E.3    Kumar, P.4    Chowdhury, S.5    Black, M.A.6    Gemmell, N.7
  • 59
    • 84860176878 scopus 로고    scopus 로고
    • Endogenous protein S-nitrosylation in E coli: Regulation by OxyR
    • D. Seth, A. Hausladen, Y.J. Wang, and J.S. Stamler Endogenous protein S-nitrosylation in E. coli: regulation by OxyR Science 336 2012 470 473
    • (2012) Science , vol.336 , pp. 470-473
    • Seth, D.1    Hausladen, A.2    Wang, Y.J.3    Stamler, J.S.4
  • 60
    • 0037015078 scopus 로고    scopus 로고
    • Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription
    • A. Siddiqui-Jain, C.L. Grand, D.J. Bearss, and L.H. Hurley Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription Proc. Natl. Acad. Sci. USA 99 2002 11593 11598
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 11593-11598
    • Siddiqui-Jain, A.1    Grand, C.L.2    Bearss, D.J.3    Hurley, L.H.4
  • 62
    • 52449093394 scopus 로고    scopus 로고
    • Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species
    • A. Verma, K. Halder, R. Halder, V.K. Yadav, P. Rawal, R.K. Thakur, F. Mohd, A. Sharma, and S. Chowdhury Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species J. Med. Chem. 51 2008 5641 5649
    • (2008) J. Med. Chem. , vol.51 , pp. 5641-5649
    • Verma, A.1    Halder, K.2    Halder, R.3    Yadav, V.K.4    Rawal, P.5    Thakur, R.K.6    Mohd, F.7    Sharma, A.8    Chowdhury, S.9
  • 63
    • 67249138595 scopus 로고    scopus 로고
    • Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells
    • A. Verma, V.K. Yadav, R. Basundra, A. Kumar, and S. Chowdhury Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells Nucleic Acids Res. 37 2009 4194 4204
    • (2009) Nucleic Acids Res. , vol.37 , pp. 4194-4204
    • Verma, A.1    Yadav, V.K.2    Basundra, R.3    Kumar, A.4    Chowdhury, S.5
  • 64
    • 84874561094 scopus 로고    scopus 로고
    • Suggested role for G4 DNA in recombinational switching at the antigenic variation locus of the Lyme disease spirochete
    • R. Walia, and G. Chaconas Suggested role for G4 DNA in recombinational switching at the antigenic variation locus of the Lyme disease spirochete PLoS ONE 8 2013 e57792
    • (2013) PLoS ONE , vol.8 , pp. 57792
    • Walia, R.1    Chaconas, G.2
  • 65
    • 0027918585 scopus 로고
    • Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex
    • Y. Wang, and D.J. Patel Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex Structure 1 1993 263 282
    • (1993) Structure , vol.1 , pp. 263-282
    • Wang, Y.1    Patel, D.J.2
  • 66
    • 34447541999 scopus 로고    scopus 로고
    • RNA quadruplex-based modulation of gene expression
    • M. Wieland, and J.S. Hartig RNA quadruplex-based modulation of gene expression Chem. Biol. 14 2007 757 763
    • (2007) Chem. Biol. , vol.14 , pp. 757-763
    • Wieland, M.1    Hartig, J.S.2
  • 67
    • 65249122814 scopus 로고    scopus 로고
    • Artificial ribozyme switches containing natural riboswitch aptamer domains
    • M. Wieland, A. Benz, B. Klauser, and J.S. Hartig Artificial ribozyme switches containing natural riboswitch aptamer domains Angew. Chem. Int. Ed. Engl. 48 2009 2715 2718
    • (2009) Angew. Chem. Int. Ed. Engl. , vol.48 , pp. 2715-2718
    • Wieland, M.1    Benz, A.2    Klauser, B.3    Hartig, J.S.4
  • 68
    • 0037206833 scopus 로고    scopus 로고
    • Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
    • W. Winkler, A. Nahvi, and R.R. Breaker Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression Nature 419 2002 952 956
    • (2002) Nature , vol.419 , pp. 952-956
    • Winkler, W.1    Nahvi, A.2    Breaker, R.R.3
  • 69
    • 38549092075 scopus 로고    scopus 로고
    • QuadBase: Genome-wide database of G4 DNA - Occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes
    • V.K. Yadav, J.K. Abraham, P. Mani, R. Kulshrestha, and S. Chowdhury QuadBase: genome-wide database of G4 DNA - occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes Nucleic Acids Res. 36 2008 D381 D385
    • (2008) Nucleic Acids Res. , vol.36 , pp. 381-D385
    • Yadav, V.K.1    Abraham, J.K.2    Mani, P.3    Kulshrestha, R.4    Chowdhury, S.5
  • 70
    • 84896714434 scopus 로고    scopus 로고
    • Stimulation of ribosomal frameshifting by RNA G-quadruplex structures
    • C.H. Yu, M.P. Teulade-Fichou, and R.C. Olsthoorn Stimulation of ribosomal frameshifting by RNA G-quadruplex structures Nucleic Acids Res. 42 2014 1887 1892
    • (2014) Nucleic Acids Res. , vol.42 , pp. 1887-1892
    • Yu, C.H.1    Teulade-Fichou, M.P.2    Olsthoorn, R.C.3
  • 71
    • 0035958587 scopus 로고    scopus 로고
    • The path of messenger RNA through the ribosome
    • G.Z. Yusupova, M.M. Yusupov, J.H. Cate, and H.F. Noller The path of messenger RNA through the ribosome Cell 106 2001 233 241
    • (2001) Cell , vol.106 , pp. 233-241
    • Yusupova, G.Z.1    Yusupov, M.M.2    Cate, J.H.3    Noller, H.F.4
  • 72
    • 77952870567 scopus 로고    scopus 로고
    • Monomorphic RNA G-quadruplex and polymorphic DNA G-quadruplex structures responding to cellular environmental factors
    • D.H. Zhang, T. Fujimoto, S. Saxena, H.Q. Yu, D. Miyoshi, and N. Sugimoto Monomorphic RNA G-quadruplex and polymorphic DNA G-quadruplex structures responding to cellular environmental factors Biochemistry 49 2010 4554 4563
    • (2010) Biochemistry , vol.49 , pp. 4554-4563
    • Zhang, D.H.1    Fujimoto, T.2    Saxena, S.3    Yu, H.Q.4    Miyoshi, D.5    Sugimoto, N.6
  • 73
    • 80051739988 scopus 로고    scopus 로고
    • A sequence-independent analysis of the loop length dependence of intramolecular RNA G-quadruplex stability and topology
    • A.Y. Zhang, A. Bugaut, and S. Balasubramanian A sequence-independent analysis of the loop length dependence of intramolecular RNA G-quadruplex stability and topology Biochemistry 50 2011 7251 7258
    • (2011) Biochemistry , vol.50 , pp. 7251-7258
    • Zhang, A.Y.1    Bugaut, A.2    Balasubramanian, S.3
  • 74
    • 84881504588 scopus 로고    scopus 로고
    • DNA G-quadruplex formation in response to remote downstream transcription activity: Long-range sensing and signal transducing in DNA double helix
    • C. Zhang, H.H. Liu, K.W. Zheng, Y.H. Hao, and Z. Tan DNA G-quadruplex formation in response to remote downstream transcription activity: long-range sensing and signal transducing in DNA double helix Nucleic Acids Res. 41 2013 7144 7152
    • (2013) Nucleic Acids Res. , vol.41 , pp. 7144-7152
    • Zhang, C.1    Liu, H.H.2    Zheng, K.W.3    Hao, Y.H.4    Tan, Z.5
  • 75
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • M. Zuker Mfold web server for nucleic acid folding and hybridization prediction Nucleic Acids Res. 31 2003 3406 3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


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