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Volumn 36, Issue 1, 2008, Pages 144-156

Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL DNA; FUNGAL RNA; HELICASE; HISTONE; MESOPORPHYRIN; RIBOSOME DNA;

EID: 38349095525     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm986     Document Type: Article
Times cited : (236)

References (87)
  • 2
    • 0023788886 scopus 로고
    • Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis
    • Sen,D. and Gilbert,W. (1988) Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis. Nature, 334, 364-366.
    • (1988) Nature , vol.334 , pp. 364-366
    • Sen, D.1    Gilbert, W.2
  • 3
    • 33845352895 scopus 로고    scopus 로고
    • Dynamic roles for G4 DNA in the biology of eukaryotic cells
    • Maizels,N. (2006) Dynamic roles for G4 DNA in the biology of eukaryotic cells. Nat. Struct. Mol. Biol., 13, 1055-1059.
    • (2006) Nat. Struct. Mol. Biol , vol.13 , pp. 1055-1059
    • Maizels, N.1
  • 4
    • 34347273762 scopus 로고    scopus 로고
    • Tetraplex DNA and its interacting proteins
    • Fry,M. (2007) Tetraplex DNA and its interacting proteins. Front. Biosci., 12, 4336-4351.
    • (2007) Front. Biosci , vol.12 , pp. 4336-4351
    • Fry, M.1
  • 6
    • 0033617316 scopus 로고    scopus 로고
    • Human Werner syndrome DNA helicase unwinds tetrahelical structures of the fragile X syndrome repeat sequence d(CGG)n
    • Fry,M. and Loeb,L.A. (1999) Human Werner syndrome DNA helicase unwinds tetrahelical structures of the fragile X syndrome repeat sequence d(CGG)n. J. Biol. Chem., 274, 12797-12802.
    • (1999) J. Biol. Chem , vol.274 , pp. 12797-12802
    • Fry, M.1    Loeb, L.A.2
  • 7
    • 0037106470 scopus 로고    scopus 로고
    • G4 DNA unwinding by BLM and Sgs1p: Substrate specificity and substrate-specific inhibition
    • Huber,M.D., Lee,D.C. and Maizels,N. (2002) G4 DNA unwinding by BLM and Sgs1p: Substrate specificity and substrate-specific inhibition. Nucleic Acids Res., 30, 3954-3961.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3954-3961
    • Huber, M.D.1    Lee, D.C.2    Maizels, N.3
  • 8
    • 0037142071 scopus 로고    scopus 로고
    • Crystal structure of parallel quadruplexes from human telomeric DNA
    • Parkinson,G.N., Lee,M.P. and Neidle,S. (2002) Crystal structure of parallel quadruplexes from human telomeric DNA. Nature, 417, 876-880.
    • (2002) Nature , vol.417 , pp. 876-880
    • Parkinson, G.N.1    Lee, M.P.2    Neidle, S.3
  • 9
    • 27144451010 scopus 로고    scopus 로고
    • Telomere end-binding proteins control the formation of G-quadruplex DNA structures in vivo
    • Paeschke,K., Simonsson,T., Postberg,J., Rhodes,D. and Lipps,H.J. (2005) Telomere end-binding proteins control the formation of G-quadruplex DNA structures in vivo. Nat. Struct. Mol. Biol., 12, 847-854.
    • (2005) Nat. Struct. Mol. Biol , vol.12 , pp. 847-854
    • Paeschke, K.1    Simonsson, T.2    Postberg, J.3    Rhodes, D.4    Lipps, H.J.5
  • 10
    • 0033034413 scopus 로고    scopus 로고
    • High affinity interactions of nucleolin with G-G-paired rDNA
    • Hanakahi,L.A., Sun,H. and Maizels,N. (1999) High affinity interactions of nucleolin with G-G-paired rDNA. J. Biol. Chem., 274, 15908-15912.
    • (1999) J. Biol. Chem , vol.274 , pp. 15908-15912
    • Hanakahi, L.A.1    Sun, H.2    Maizels, N.3
  • 11
    • 0031004279 scopus 로고    scopus 로고
    • DNA secondary structures and the evolution of hypervariable tandem arrays
    • Weitzmann,M.N., Woodford,K.J. and Usdin,K. (1997) DNA secondary structures and the evolution of hypervariable tandem arrays. J. Biol. Chem., 272, 9517-9523.
    • (1997) J. Biol. Chem , vol.272 , pp. 9517-9523
    • Weitzmann, M.N.1    Woodford, K.J.2    Usdin, K.3
  • 12
    • 3042785608 scopus 로고    scopus 로고
    • Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA
    • Duquette,M.L., Handa,P., Vincent,J.A., Taylor,A.F. and Maizels,N. (2004) Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA. Genes. Dev., 18, 1618-1629.
    • (2004) Genes. Dev , vol.18 , pp. 1618-1629
    • Duquette, M.L.1    Handa, P.2    Vincent, J.A.3    Taylor, A.F.4    Maizels, N.5
  • 13
    • 0035902465 scopus 로고    scopus 로고
    • In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia lemnae macronuclei
    • Schaffitzel,C., Berger,I., Postberg,J., Hanes,J., Lipps,H.J. and Pluckthun,A. (2001) In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia lemnae macronuclei. Proc. Natl Acad. Sci. USA, 98, 8572-8577.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 8572-8577
    • Schaffitzel, C.1    Berger, I.2    Postberg, J.3    Hanes, J.4    Lipps, H.J.5    Pluckthun, A.6
  • 14
    • 0027220845 scopus 로고
    • The beta subunit of Oxytricha telomere-binding protein promotes G-quartet formation by telomeric DNA
    • Fang,G. and Cech,T.R. (1993) The beta subunit of Oxytricha telomere-binding protein promotes G-quartet formation by telomeric DNA. Cell, 74, 875-885.
    • (1993) Cell , vol.74 , pp. 875-885
    • Fang, G.1    Cech, T.R.2
  • 15
    • 23344451160 scopus 로고    scopus 로고
    • Human POT1 disrupts telomeric G-quadruplexes allowing telomerase extension in vitro
    • Zaug,A.J., Podell,E.R. and Cech,T.R. (2005) Human POT1 disrupts telomeric G-quadruplexes allowing telomerase extension in vitro. Proc. Natl Acad. Sci. USA, 102, 10864-10869.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 10864-10869
    • Zaug, A.J.1    Podell, E.R.2    Cech, T.R.3
  • 16
    • 33746916385 scopus 로고    scopus 로고
    • The G-quadruplex ligand telomestatin inhibits POT1 binding to telomeric sequences in vitro and induces GFP-POT1 dissociation from telomeres in human cells
    • Gomez,D., O'Donohue,M.F., Wenner,T., Douarre,C., Macadre,J., Koebel,P., Giraud-Panis,M.J., Kaplan,H., Kolkes,A. et al. (2006) The G-quadruplex ligand telomestatin inhibits POT1 binding to telomeric sequences in vitro and induces GFP-POT1 dissociation from telomeres in human cells. Cancer Res., 66, 6908-6912.
    • (2006) Cancer Res , vol.66 , pp. 6908-6912
    • Gomez, D.1    O'Donohue, M.F.2    Wenner, T.3    Douarre, C.4    Macadre, J.5    Koebel, P.6    Giraud-Panis, M.J.7    Kaplan, H.8    Kolkes, A.9
  • 17
    • 0036699095 scopus 로고    scopus 로고
    • Disruption of dog-1 in Caenorhabditis elegans triggers deletions upstream of guanine-rich DNA
    • Cheung,I., Schertzer,M., Rose,A. and Lansdorp,P.M. (2002) Disruption of dog-1 in Caenorhabditis elegans triggers deletions upstream of guanine-rich DNA. Nat. Genet., 31, 405-409.
    • (2002) Nat. Genet , vol.31 , pp. 405-409
    • Cheung, I.1    Schertzer, M.2    Rose, A.3    Lansdorp, P.M.4
  • 18
  • 19
    • 10344256183 scopus 로고    scopus 로고
    • Defective telomere lagging strand synthesis in cells lacking WRN helicase activity
    • Crabbe,L., Verdun,R.E., Haggblom,C.I. and Karlseder,J. (2004) Defective telomere lagging strand synthesis in cells lacking WRN helicase activity. Science, 306, 1951-1953.
    • (2004) Science , vol.306 , pp. 1951-1953
    • Crabbe, L.1    Verdun, R.E.2    Haggblom, C.I.3    Karlseder, J.4
  • 21
    • 0035870569 scopus 로고    scopus 로고
    • Substrate-specific inhibition of RecQ helicase
    • Wu,X. and Maizels,N. (2001) Substrate-specific inhibition of RecQ helicase. Nucleic Acids Res., 29, 1765-1771.
    • (2001) Nucleic Acids Res , vol.29 , pp. 1765-1771
    • Wu, X.1    Maizels, N.2
  • 22
    • 0037015078 scopus 로고    scopus 로고
    • Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription
    • Siddiqui-Jain,A., Grand,C.L., Bearss,D.J. and Hurley,L.H. (2002) Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription. Proc. Natl Acad. Sci. USA, 99, 11593-11598.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 11593-11598
    • Siddiqui-Jain, A.1    Grand, C.L.2    Bearss, D.J.3    Hurley, L.H.4
  • 23
    • 33746520122 scopus 로고    scopus 로고
    • Drug targeting of the c-MYC promoter to repress gene expression via a G-quadruplex silencer element
    • Hurley,L.H., Von Hoff,D.D., Siddiqui-Jain,A. and Yang,D. (2006) Drug targeting of the c-MYC promoter to repress gene expression via a G-quadruplex silencer element. Semin. Oncol., 33, 498-512.
    • (2006) Semin. Oncol , vol.33 , pp. 498-512
    • Hurley, L.H.1    Von Hoff, D.D.2    Siddiqui-Jain, A.3    Yang, D.4
  • 24
    • 20144364292 scopus 로고    scopus 로고
    • Prevalence of quadruplexes in the human genome
    • Huppert,J.L. and Balasubramanian,S. (2005) Prevalence of quadruplexes in the human genome. Nucleic Acids Res., 33, 2908-2916.
    • (2005) Nucleic Acids Res , vol.33 , pp. 2908-2916
    • Huppert, J.L.1    Balasubramanian, S.2
  • 25
    • 20144369806 scopus 로고    scopus 로고
    • Highly prevalent putative quadruplex sequence motifs in human DNA
    • Todd,A.K., Johnston,M. and Neidle,S. (2005) Highly prevalent putative quadruplex sequence motifs in human DNA. Nucleic Acids Res., 33 2901-2907.
    • (2005) Nucleic Acids Res , vol.33 , pp. 2901-2907
    • Todd, A.K.1    Johnston, M.2    Neidle, S.3
  • 27
    • 33846786859 scopus 로고    scopus 로고
    • Enrichment of G4 DNA motif in transcriptional regulatory region of chicken genome
    • Du,Z., Kong,P., Gao,Y. and Li,N. (2007) Enrichment of G4 DNA motif in transcriptional regulatory region of chicken genome. Biochem. Biophys. Res. Commun., 354, 1067-1070.
    • (2007) Biochem. Biophys. Res. Commun , vol.354 , pp. 1067-1070
    • Du, Z.1    Kong, P.2    Gao, Y.3    Li, N.4
  • 28
    • 33748519569 scopus 로고    scopus 로고
    • Gene function correlates with potential for G4 DNA formation in the human genome
    • Eddy,J. and Maizels,N. (2006) Gene function correlates with potential for G4 DNA formation in the human genome. Nucleic Acids Res., 34, 3887-3896.
    • (2006) Nucleic Acids Res , vol.34 , pp. 3887-3896
    • Eddy, J.1    Maizels, N.2
  • 29
    • 33846928449 scopus 로고    scopus 로고
    • G-quadruplexes in promoters throughout the human genome
    • Huppert,J.L. and Balasubramanian,S. (2007) G-quadruplexes in promoters throughout the human genome. Nucleic Acids Res., 35, 406-413.
    • (2007) Nucleic Acids Res , vol.35 , pp. 406-413
    • Huppert, J.L.1    Balasubramanian, S.2
  • 30
    • 34250845845 scopus 로고    scopus 로고
    • Single-molecule conformational analysis of G-Quadruplex formation in the promoter DNA duplex of the proto-oncogene C-Kit
    • Shirude,P.S., Okumus,B., Ying,L., Ha,T. and Balasubramanian,S. (2007) Single-molecule conformational analysis of G-Quadruplex formation in the promoter DNA duplex of the proto-oncogene C-Kit- J. Am. Chem. Soc. 129, 7484-7485.
    • (2007) J. Am. Chem. Soc , vol.129 , pp. 7484-7485
    • Shirude, P.S.1    Okumus, B.2    Ying, L.3    Ha, T.4    Balasubramanian, S.5
  • 31
    • 22844434368 scopus 로고    scopus 로고
    • Homodimeric MyoD preferentially binds tetraplex structures of regulatory sequences of muscle-specific genes
    • Etzioni,S., Yafe,A., Khateb,S., Weisman-Shomer,P., Bengal,E. and Fry,M. (2005) Homodimeric MyoD preferentially binds tetraplex structures of regulatory sequences of muscle-specific genes. J. Biol. Chem., 280, 26805-26812.
    • (2005) J. Biol. Chem , vol.280 , pp. 26805-26812
    • Etzioni, S.1    Yafe, A.2    Khateb, S.3    Weisman-Shomer, P.4    Bengal, E.5    Fry, M.6
  • 32
    • 0033534467 scopus 로고    scopus 로고
    • G4 DNA binding by LR1 and its subunits, nucleotin and hnRNP D, A role for G-G pairing in immunoglobulin switch recombination
    • Dempsey,L.A., Sun,H., Hanakahi,L.A. and Maizels,N. (1999) G4 DNA binding by LR1 and its subunits, nucleotin and hnRNP D, A role for G-G pairing in immunoglobulin switch recombination. J. Biol. Chem., 274, 1066-1071.
    • (1999) J. Biol. Chem , vol.274 , pp. 1066-1071
    • Dempsey, L.A.1    Sun, H.2    Hanakahi, L.A.3    Maizels, N.4
  • 33
    • 0028246339 scopus 로고
    • The yeast telomere-binding protein RAP1 binds to and promotes the formation of DNA quadruplexes in telomeric DNA
    • Giraldo,R. and Rhodes,D. (1994) The yeast telomere-binding protein RAP1 binds to and promotes the formation of DNA quadruplexes in telomeric DNA. Embo J, 13, 2411-2420.
    • (1994) Embo J , vol.13 , pp. 2411-2420
    • Giraldo, R.1    Rhodes, D.2
  • 37
    • 24644512209 scopus 로고    scopus 로고
    • Simpleaffy: A BioConductor package for Affymetrix Quality Control and data analysis
    • Wilson,C.L. and Miller,C.J. (2005) Simpleaffy: A BioConductor package for Affymetrix Quality Control and data analysis. Bioinformatics, 21, 3683-3685.
    • (2005) Bioinformatics , vol.21 , pp. 3683-3685
    • Wilson, C.L.1    Miller, C.J.2
  • 38
    • 38349100609 scopus 로고    scopus 로고
    • Affymetrix. (2001). Microarray Suite 5.0 User's Guide.
    • Affymetrix. (2001). Microarray Suite 5.0 User's Guide.
  • 39
    • 23844551199 scopus 로고    scopus 로고
    • Stochastic models inspired by hybridization theory for short oligonucleotide arrays
    • Wu,Z. and Irizarry,R.A. (2005) Stochastic models inspired by hybridization theory for short oligonucleotide arrays. J. Comput. Biol., 12, 882-893.
    • (2005) J. Comput. Biol , vol.12 , pp. 882-893
    • Wu, Z.1    Irizarry, R.A.2
  • 40
    • 33751006151 scopus 로고    scopus 로고
    • RankProd: A bioconductor package for detecting differentially expressed genes in meta-analysis
    • Hong,F., Breitling,R., McEntee,C.W., Wittner,B.S., Nemhauser,J.L. and Chory,J. (2006) RankProd: A bioconductor package for detecting differentially expressed genes in meta-analysis. Bioinformatics, 22, 2825-2827.
    • (2006) Bioinformatics , vol.22 , pp. 2825-2827
    • Hong, F.1    Breitling, R.2    McEntee, C.W.3    Wittner, B.S.4    Nemhauser, J.L.5    Chory, J.6
  • 41
    • 28044472962 scopus 로고    scopus 로고
    • Rank-based methods as a non-parametric alternative of the T-statistic for the analysis of biological microarray data
    • Breitling,R. and Herzyk,P. (2005) Rank-based methods as a non-parametric alternative of the T-statistic for the analysis of biological microarray data. J. Bioinform. Comput. Biol., 3, 1171-1189.
    • (2005) J. Bioinform. Comput. Biol , vol.3 , pp. 1171-1189
    • Breitling, R.1    Herzyk, P.2
  • 43
    • 20144384163 scopus 로고    scopus 로고
    • Mapping of transcription start sites in Saccharomyces cerevisiae using 5′ SAGE
    • Zhang,Z. and Dietrich,F.S. (2005) Mapping of transcription start sites in Saccharomyces cerevisiae using 5′ SAGE. Nucleic Acids Res. 33, 2838-2851.
    • (2005) Nucleic Acids Res , vol.33 , pp. 2838-2851
    • Zhang, Z.1    Dietrich, F.S.2
  • 44
    • 1442329652 scopus 로고    scopus 로고
    • Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae
    • Hurowitz,E.H. and Brown,P.O. (2003) Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae. Genome Biol., 5, R2.
    • (2003) Genome Biol , vol.5
    • Hurowitz, E.H.1    Brown, P.O.2
  • 45
    • 33947310727 scopus 로고    scopus 로고
    • An RNA G-quadruplex in the 5′ UTR of the NRAS proto-oncogene modulates translation
    • Kumari,S., Bugaut,A., Huppert,J.L. and Balasubramanian,S. (2007) An RNA G-quadruplex in the 5′ UTR of the NRAS proto-oncogene modulates translation. Nat. Chem. Biol., 3, 218-221.
    • (2007) Nat. Chem. Biol , vol.3 , pp. 218-221
    • Kumari, S.1    Bugaut, A.2    Huppert, J.L.3    Balasubramanian, S.4
  • 46
    • 0024674170 scopus 로고
    • Synthesis of ribosomes in Saccharomyces cerevisiae
    • Warner,J.R. (1989) Synthesis of ribosomes in Saccharomyces cerevisiae. Microbiol. Rev., 53, 256-271.
    • (1989) Microbiol. Rev , vol.53 , pp. 256-271
    • Warner, J.R.1
  • 47
    • 0034785583 scopus 로고    scopus 로고
    • Molecular basis for telomere repeat divergence in budding yeast
    • Forstemann,K. and Lingner,J. (2001) Molecular basis for telomere repeat divergence in budding yeast. Mol. Cell Biol., 21, 7277-7286.
    • (2001) Mol. Cell Biol , vol.21 , pp. 7277-7286
    • Forstemann, K.1    Lingner, J.2
  • 48
    • 0033564067 scopus 로고    scopus 로고
    • NMR observation of T-tetrads in a parallel stranded DNA quadruplex formed by Saccharomyces cerevisiae telomere repeats
    • Patel,P.K. and Hosur,R.V. (1999) NMR observation of T-tetrads in a parallel stranded DNA quadruplex formed by Saccharomyces cerevisiae telomere repeats. Nucleic Acids Res., 27, 2457-2464.
    • (1999) Nucleic Acids Res , vol.27 , pp. 2457-2464
    • Patel, P.K.1    Hosur, R.V.2
  • 49
    • 26844489856 scopus 로고    scopus 로고
    • Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss
    • Zhang,H., Roberts,D.N. and Cairns,B.R. (2005) Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss. Cell, 123, 219-231.
    • (2005) Cell , vol.123 , pp. 219-231
    • Zhang, H.1    Roberts, D.N.2    Cairns, B.R.3
  • 50
    • 29444454191 scopus 로고    scopus 로고
    • Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling
    • Li,B., Pattenden,S.G., Lee,D., Gutierrez,J., Chen,J., Seidel,C., Gerton,J. and Workman,J.L. (2005) Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling. Proc. Natl Acad. Sci. USA, 102, 18385-18390.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 18385-18390
    • Li, B.1    Pattenden, S.G.2    Lee, D.3    Gutierrez, J.4    Chen, J.5    Seidel, C.6    Gerton, J.7    Workman, J.L.8
  • 51
    • 33644999042 scopus 로고    scopus 로고
    • Telomeric heterochromatin boundaries require NuA4-dependent acetylation of histone variant H2A.Z in Saccharomyces cereviside
    • Babrarz,J.E., Halley,J.E. and Rine,J. (2006) Telomeric heterochromatin boundaries require NuA4-dependent acetylation of histone variant H2A.Z in Saccharomyces cereviside. Genes. Dev., 20, 700-710.
    • (2006) Genes. Dev , vol.20 , pp. 700-710
    • Babrarz, J.E.1    Halley, J.E.2    Rine, J.3
  • 52
    • 0037148368 scopus 로고    scopus 로고
    • Transcriptional silencing at Saccharomyces telomeres: Implications for other organisms
    • Tham,W.H. and Zakian,V.A. (2002) Transcriptional silencing at Saccharomyces telomeres: Implications for other organisms. Oncogene 21, 512-521.
    • (2002) Oncogene , vol.21 , pp. 512-521
    • Tham, W.H.1    Zakian, V.A.2
  • 57
    • 0033534146 scopus 로고    scopus 로고
    • Sequence and structural selectivity of nucleic acid binding ligands
    • Ren,J. and Chaires,J.B. (1999) Sequence and structural selectivity of nucleic acid binding ligands. Biochemistry, 38, 16067-16075.
    • (1999) Biochemistry , vol.38 , pp. 16067-16075
    • Ren, J.1    Chaires, J.B.2
  • 58
    • 0039129145 scopus 로고    scopus 로고
    • Accelerated assembly of G-quadruplex structures by a small molecule
    • Han,H., Cliff,C.L. and Hurley,L.H. (1999) Accelerated assembly of G-quadruplex structures by a small molecule. Biochemistry, 38 6981-6986.
    • (1999) Biochemistry , vol.38 , pp. 6981-6986
    • Han, H.1    Cliff, C.L.2    Hurley, L.H.3
  • 59
    • 34250333423 scopus 로고    scopus 로고
    • Quadruplex ligands may act as molecular chaperones for tetramolecular quadruplex formation
    • De Cian,A. and Mergny,J.L (2007) Quadruplex ligands may act as molecular chaperones for tetramolecular quadruplex formation. Nucleic Acids Res., 35, 2483-2493.
    • (2007) Nucleic Acids Res , vol.35 , pp. 2483-2493
    • De Cian, A.1    Mergny, J.L.2
  • 60
    • 0035162698 scopus 로고    scopus 로고
    • Genomic expression responses to DNA- damaging agents and the regulatory role of the yeast ATR homolog Meclp
    • Gasch,P., Huang,M., Metzner,S., Botstein,D., Elledge,S.J. and Brown,P.O. (2001) Genomic expression responses to DNA- damaging agents and the regulatory role of the yeast ATR homolog Meclp. Mol. Biol. Cell., 12, 2987-3003.
    • (2001) Mol. Biol. Cell , vol.12 , pp. 2987-3003
    • Gasch, P.1    Huang, M.2    Metzner, S.3    Botstein, D.4    Elledge, S.J.5    Brown, P.O.6
  • 62
    • 16244416163 scopus 로고    scopus 로고
    • Rapid changes in transcription and chromatin structure of ribosomal genes in yeast during growth phase transitions
    • Fahy,D., Conconi,A. and Smerdon,M.J. (2005) Rapid changes in transcription and chromatin structure of ribosomal genes in yeast during growth phase transitions. Exp. Cell Res., 305, 305-373.
    • (2005) Exp. Cell Res , vol.305 , pp. 305-373
    • Fahy, D.1    Conconi, A.2    Smerdon, M.J.3
  • 63
    • 0142059575 scopus 로고    scopus 로고
    • DNA damage and stress transcripts in Saccharomyces cerevisiae mutant sgsl
    • Fry,R.C., Sambandan,T.G. and Rha,C. (2003) DNA damage and stress transcripts in Saccharomyces cerevisiae mutant sgsl. Mech. Ageing Dev., 124, 839-846.
    • (2003) Mech. Ageing Dev , vol.124 , pp. 839-846
    • Fry, R.C.1    Sambandan, T.G.2    Rha, C.3
  • 64
    • 33646100776 scopus 로고    scopus 로고
    • A conserved G4 DNA binding domain in RecQ family helicases
    • Huber,M.D., Duquette,M.L., Shiels,J.C. and Maizels,N. (2006) A conserved G4 DNA binding domain in RecQ family helicases. J. Mol. Biol., 358, 1071-1080.
    • (2006) J. Mol. Biol , vol.358 , pp. 1071-1080
    • Huber, M.D.1    Duquette, M.L.2    Shiels, J.C.3    Maizels, N.4
  • 65
    • 33947684367 scopus 로고    scopus 로고
    • The ins and outs of ATP-dependent chromatin remodeling in budding yeast: Biophysical and proteomic petspectives
    • van Vugt,J.J., Ranes,M., Campsteijn,C. and Logie,C. (2007) The ins and outs of ATP-dependent chromatin remodeling in budding yeast: Biophysical and proteomic petspectives. Biochim. Biophys. Acta, 1769, 153-171.
    • (2007) Biochim. Biophys. Acta , vol.1769 , pp. 153-171
    • van Vugt, J.J.1    Ranes, M.2    Campsteijn, C.3    Logie, C.4
  • 66
    • 33847070442 scopus 로고    scopus 로고
    • The role of chromatin during transcription
    • Li,B., Carey,M. and Workman,J.L. (2007) The role of chromatin during transcription. Cell, 128, 707-719.
    • (2007) Cell , vol.128 , pp. 707-719
    • Li, B.1    Carey, M.2    Workman, J.L.3
  • 68
    • 6344279816 scopus 로고    scopus 로고
    • Zhang,H., Richardson,D.O., Roberts,D.N., Utley,R., Erdjument-Bromage,H., Tempst,P.,. Cote,J. and Cairns,B.R. (2004) The Yalp component of the SWR1 and NuA4 complexes is required for proper gene expression, histone, H4 acetylation, and Htzl replacement near telomeres. Mol. Cell Biol. 24, 9424-9-436.
    • Zhang,H., Richardson,D.O., Roberts,D.N., Utley,R., Erdjument-Bromage,H., Tempst,P.,. Cote,J. and Cairns,B.R. (2004) The Yalp component of the SWR1 and NuA4 complexes is required for proper gene expression, histone, H4 acetylation, and Htzl replacement near telomeres. Mol. Cell Biol. 24, 9424-9-436.
  • 69
    • 0037423930 scopus 로고    scopus 로고
    • Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent heterochromatin
    • Meneghini,M.D., Wu,M. and Madhani,H.D. (2003) Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent heterochromatin. Cell, 112, 725-736.
    • (2003) Cell , vol.112 , pp. 725-736
    • Meneghini, M.D.1    Wu, M.2    Madhani, H.D.3
  • 70
    • 33645814013 scopus 로고    scopus 로고
    • (20Q6) The Spt4p subunit of yeast DSIF stimulates association of the Pafl complex with elongating RNA polymerase II
    • Qiu,H., Hu,C., Wong,C.M. and Hinnebusch,A.G. (20Q6) The Spt4p subunit of yeast DSIF stimulates association of the Pafl complex with elongating RNA polymerase II. Mol. Cell Biol., 26, 3135-3148.
    • Mol. Cell Biol , vol.26 , pp. 3135-3148
    • Qiu, H.1    Hu, C.2    Wong, C.M.3    Hinnebusch, A.G.4
  • 71
    • 33750698262 scopus 로고    scopus 로고
    • The multiple faces of Set1
    • Dehe,P.M. and Geli,V. (2006) The multiple faces of Set1. Biochem. Cell. Biol., 84, 535-548.
    • (2006) Biochem. Cell. Biol , vol.84 , pp. 535-548
    • Dehe, P.M.1    Geli, V.2
  • 72
    • 0942290540 scopus 로고    scopus 로고
    • Rad6 plays a role in transcriptional activation through ubiquitylation of histone H2B
    • Kao,C.F., Hillyer,C., Tsukuda,T., Henry,K., Berger,S. and Osley,M.A. (2004) Rad6 plays a role in transcriptional activation through ubiquitylation of histone H2B. Genes. Dev., 18, 184-195.
    • (2004) Genes. Dev , vol.18 , pp. 184-195
    • Kao, C.F.1    Hillyer, C.2    Tsukuda, T.3    Henry, K.4    Berger, S.5    Osley, M.A.6
  • 75
    • 33644856138 scopus 로고    scopus 로고
    • Regulation of nucleosome stability as a mediator of chromatin function
    • Giresi,P.G., Gupta,M. and Lieb,J.D. (2006) Regulation of nucleosome stability as a mediator of chromatin function. Curr. Opin. Genet. Dev., 16, 171-176.
    • (2006) Curr. Opin. Genet. Dev , vol.16 , pp. 171-176
    • Giresi, P.G.1    Gupta, M.2    Lieb, J.D.3
  • 76
    • 19344370199 scopus 로고    scopus 로고
    • Crosstalk in gene expression: Coupling and co-regulation of rDNA transcription, pre-ribosome assembly and pre-rRNA processing
    • Granneman,S. and Baserga,S.J. (2005) Crosstalk in gene expression: coupling and co-regulation of rDNA transcription, pre-ribosome assembly and pre-rRNA processing. Curr. Opin. Cell Biol., 17, 281-286,
    • (2005) Curr. Opin. Cell Biol , vol.17 , pp. 281-286
    • Granneman, S.1    Baserga, S.J.2
  • 77
    • 0023806623 scopus 로고
    • Organization of replication of ribosomal DNA in Saccharomyces cerevisiae
    • Linskens,M.H. and Huberman,J.A. (1988) Organization of replication of ribosomal DNA in Saccharomyces cerevisiae. Mol. Cell Biol., 8 4927-4935.
    • (1988) Mol. Cell Biol , vol.8 , pp. 4927-4935
    • Linskens, M.H.1    Huberman, J.A.2
  • 78
  • 79
    • 33645747064 scopus 로고    scopus 로고
    • Semi-conservative DNA replication through telomeres requires Tazl
    • Miller,K.M., Rog,O. and Cooper,J.P. (2006) Semi-conservative DNA replication through telomeres requires Tazl. Nature, 440, 824-828.
    • (2006) Nature , vol.440 , pp. 824-828
    • Miller, K.M.1    Rog, O.2    Cooper, J.P.3
  • 80
    • 34247390746 scopus 로고    scopus 로고
    • Werner and Hutchinson-Gilford progeria syndromes: Mechanistic basis of human progeroid diseases
    • Kudlow,B.A., Kennedy,B.K. and Monnat,R.J.Jr. (2007) Werner and Hutchinson-Gilford progeria syndromes: Mechanistic basis of human progeroid diseases. Nat. Rev. Mol. Cell Biol., 8, 394-404.
    • (2007) Nat. Rev. Mol. Cell Biol , vol.8 , pp. 394-404
    • Kudlow, B.A.1    Kennedy, B.K.2    Monnat Jr., R.J.3
  • 81
    • 0035857043 scopus 로고    scopus 로고
    • The Bloom syndrome protein interacts and cooperates with p53 in regulation of transcription and cell growth control
    • Garkavtsev,I.V., Kley,N., Grigorian,I.A. and Gudkov,A.V. (2001) The Bloom syndrome protein interacts and cooperates with p53 in regulation of transcription and cell growth control. Oncogene, 20, 8276-8280.
    • (2001) Oncogene , vol.20 , pp. 8276-8280
    • Garkavtsev, I.V.1    Kley, N.2    Grigorian, I.A.3    Gudkov, A.V.4
  • 82
    • 33644541793 scopus 로고    scopus 로고
    • Gene expression and DNA repair in progeroid syndromes and human aging
    • Kyng,K.J. and Bohr,V.A. (2005) Gene expression and DNA repair in progeroid syndromes and human aging. Ageing Res. Rev., 4, 579-602.
    • (2005) Ageing Res. Rev , vol.4 , pp. 579-602
    • Kyng, K.J.1    Bohr, V.A.2
  • 83
    • 0142123097 scopus 로고    scopus 로고
    • Gene expression profiling in Werner syndrome closely resembles that of normal aging
    • Kyng,K.J., May,A., Kolvraa,S: And Bohr,V.A. (2003) Gene expression profiling in Werner syndrome closely resembles that of normal aging. Proc. Natl Acad. Sci. USA, 100, 12259-12264.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 12259-12264
    • Kyng, K.J.1    May, A.2    Kolvraa, S.3    And Bohr, V.A.4
  • 86
    • 3042671689 scopus 로고    scopus 로고
    • Influence of loop size on the stability of intramolecular DNA quadruplexes
    • Risitano,A. and Fox,K.R. (2004) Influence of loop size on the stability of intramolecular DNA quadruplexes. Nucleic Acids Res., 32, 2598-2606.
    • (2004) Nucleic Acids Res , vol.32 , pp. 2598-2606
    • Risitano, A.1    Fox, K.R.2


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