-
1
-
-
0035018021
-
G-quadruplex DNA structures variations on a theme
-
Simonsson, T. (2001) G-quadruplex DNA structures variations on a theme Biol. Chem. 382, 621-628
-
(2001)
Biol. Chem.
, vol.382
, pp. 621-628
-
-
Simonsson, T.1
-
3
-
-
0037142071
-
Crystal structure of parallel quadruplexes from human telomeric DNA
-
Parkinson, G. N., Lee, M. P. H., and Neidle, S. (2002) Crystal structure of parallel quadruplexes from human telomeric DNA Nature 417, 876-880
-
(2002)
Nature
, vol.417
, pp. 876-880
-
-
Parkinson, G.N.1
Lee, M.P.H.2
Neidle, S.3
-
4
-
-
34247160470
-
Structure of an unprecedented G-quadruplex scaffold in the human c-kit promoter
-
DOI 10.1021/ja068739h
-
Phan, A. T., Kuryavyi, V., Burge, S., Neidle, S., and Patel, D. J. (2007) Structure of an unprecedented G-quadruplex scaffold in the human c-kit promoter J. Am. Chem. Soc. 129, 4386-4392 (Pubitemid 46595454)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.14
, pp. 4386-4392
-
-
Phan, A.T.1
Kuryavyi, V.2
Burge, S.3
Neidle, S.4
Patel, D.J.5
-
5
-
-
3242691283
-
The dynamic character of the G-quadruplex element in the c-MYC promoter and modification by TMPyP4
-
Seenisamy, J., Rezler, E. M., Powell, T. J., Tye, D., Gokhale, V., Joshi, C. S., Siddiqui-Jain, A., and Hurley, L. H. (2004) The dynamic character of the G-quadruplex element in the c-MYC promoter and modification by TMPyP4 J. Am. Chem. Soc. 126, 8702-8709
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 8702-8709
-
-
Seenisamy, J.1
Rezler, E.M.2
Powell, T.J.3
Tye, D.4
Gokhale, V.5
Joshi, C.S.6
Siddiqui-Jain, A.7
Hurley, L.H.8
-
6
-
-
33646580058
-
Engineering the quadruplex fold: Nucleoside conformation determines both folding topology and molecularity in guanine quadruplexes
-
Tang, C.-F. and Shafer, R. H. (2006) Engineering the quadruplex fold: Nucleoside conformation determines both folding topology and molecularity in guanine quadruplexes J. Am. Chem. Soc. 128, 5966-5973
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 5966-5973
-
-
Tang, C.-F.1
Shafer, R.H.2
-
7
-
-
33646359481
-
Predictive modelling of topology and loop variations in dimeric DNA quadruplex structures
-
Hazel, P., Parkinson, G. N., and Neidle, S. (2006) Predictive modelling of topology and loop variations in dimeric DNA quadruplex structures Nucleic Acids Res. 34, 2117-2127
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 2117-2127
-
-
Hazel, P.1
Parkinson, G.N.2
Neidle, S.3
-
8
-
-
33747860882
-
QGRS mapper: A web-based server for predicting G-quadruplexes in nucleotide sequences
-
Kikin, O., D'Antonio, L., and Bagga, P. S. (2006) QGRS mapper: A web-based server for predicting G-quadruplexes in nucleotide sequences Nucleic Acids Res. 34, w676-w682
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Kikin, O.1
D'Antonio, L.2
Bagga, P.S.3
-
9
-
-
33745858693
-
Thermodynamics of the fragile X mental retardation protein RGG box interactions with G-quartet forming RNA
-
Zanotti, K. J., Lackey, P. E., Evans, G. L., and Mihailescu, M.-R. (2006) Thermodynamics of the fragile X mental retardation protein RGG box interactions with G-quartet forming RNA Biochemistry 45, 8319-8330
-
(2006)
Biochemistry
, vol.45
, pp. 8319-8330
-
-
Zanotti, K.J.1
Lackey, P.E.2
Evans, G.L.3
Mihailescu, M.-R.4
-
10
-
-
56049121180
-
G-quadruplexes: The beginning and end of UTRs
-
Huppert, J. L., Bugaut, A., Kumari, S., and Balasubramanian, S. (2008) G-quadruplexes: The beginning and end of UTRs Nucleic Acids Res. 36, 6260-6268
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6260-6268
-
-
Huppert, J.L.1
Bugaut, A.2
Kumari, S.3
Balasubramanian, S.4
-
11
-
-
33947310727
-
An RNA G-quadruplex in the 5′-UTR of the NRAS proto-oncogene modulates translation
-
Kumari, S., Bugaut, A., Huppert, J. L., and Balasubramanian, S. (2007) An RNA G-quadruplex in the 5′-UTR of the NRAS proto-oncogene modulates translation Nat. Chem. Biol. 3, 218-221
-
(2007)
Nat. Chem. Biol.
, vol.3
, pp. 218-221
-
-
Kumari, S.1
Bugaut, A.2
Huppert, J.L.3
Balasubramanian, S.4
-
12
-
-
57049135230
-
Position and stability are determining factors for translation repression by an RNA G-quadruplex-forming sequence within the 5′ UTR of the NRAS proto-oncogene
-
Kumari, S., Bugaut, A., and Balasubramanian, S. (2008) Position and stability are determining factors for translation repression by an RNA G-quadruplex-forming sequence within the 5′ UTR of the NRAS proto-oncogene Biochemistry 47, 12664-12669
-
(2008)
Biochemistry
, vol.47
, pp. 12664-12669
-
-
Kumari, S.1
Bugaut, A.2
Balasubramanian, S.3
-
13
-
-
45749139174
-
Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif
-
Arora, A., Dutkiewicz, M., Scaria, V., Hariharan, M., Maiti, S., and Kurreck, J. (2008) Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif RNA 14, 1290-1296
-
(2008)
RNA
, vol.14
, pp. 1290-1296
-
-
Arora, A.1
Dutkiewicz, M.2
Scaria, V.3
Hariharan, M.4
Maiti, S.5
Kurreck, J.6
-
14
-
-
73149103952
-
Repression of translation of human estrogen receptor α by G-quadruplex formation
-
Balkwill, G. D., Derecka, K., Garner, T. P., Hodgman, C., Flint, A. P., and Searle, M. S. (2009) Repression of translation of human estrogen receptor α by G-quadruplex formation Biochemistry 48, 11487-11495
-
(2009)
Biochemistry
, vol.48
, pp. 11487-11495
-
-
Balkwill, G.D.1
Derecka, K.2
Garner, T.P.3
Hodgman, C.4
Flint, A.P.5
Searle, M.S.6
-
15
-
-
67049134254
-
An unusually stable G-quadruplex within the 5′-UTR of the MT3 matrix metalloproteinase mRNA represses translation in eukaryote cells
-
Morris, M. J. and Basu, S. (2009) An unusually stable G-quadruplex within the 5′-UTR of the MT3 matrix metalloproteinase mRNA represses translation in eukaryote cells Biochemistry 48, 5313-5319
-
(2009)
Biochemistry
, vol.48
, pp. 5313-5319
-
-
Morris, M.J.1
Basu, S.2
-
16
-
-
37349043972
-
Telomeric repeat-containing RNA and RNA surveillance factors at mammalian chromosome ends
-
Azzalin, C. M., Reichenbach, P., Khoriauli, L., Giulotto, E., and Lingner, J. (2007) Telomeric repeat-containing RNA and RNA surveillance factors at mammalian chromosome ends Science 318, 798-801
-
(2007)
Science
, vol.318
, pp. 798-801
-
-
Azzalin, C.M.1
Reichenbach, P.2
Khoriauli, L.3
Giulotto, E.4
Lingner, J.5
-
17
-
-
38849111756
-
Developmentally regulated transcription of mammalian telomeres by DNA-dependent RNA polymerase II
-
Schoeftner, S. and Blasco, M. A. (2008) Developmentally regulated transcription of mammalian telomeres by DNA-dependent RNA polymerase II Nat. Cell Biol. 10, 228-236
-
(2008)
Nat. Cell Biol.
, vol.10
, pp. 228-236
-
-
Schoeftner, S.1
Blasco, M.A.2
-
18
-
-
34447541999
-
RNA quadruplex-based modulation of gene expression
-
Wieland, M. and Hartig, J. S. (2007) RNA quadruplex-based modulation of gene expression Chem. Biol. 14, 757-763
-
(2007)
Chem. Biol.
, vol.14
, pp. 757-763
-
-
Wieland, M.1
Hartig, J.S.2
-
19
-
-
73349103817
-
Predictable suppression of gene expression by 5′-UTR-based RNA quadruplexes
-
Halder, K., Wieland, M., and Hartig, J. S. (2009) Predictable suppression of gene expression by 5′-UTR-based RNA quadruplexes Nucleic Acids Res. 37, 6811-6817
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 6811-6817
-
-
Halder, K.1
Wieland, M.2
Hartig, J.S.3
-
20
-
-
11444253374
-
Loop-length-dependent folding of G-quadruplexes
-
Hazel, P., Huppert, J., Balasubramanian, S., and Neidle, S. (2004) Loop-length-dependent folding of G-quadruplexes J. Am. Chem. Soc. 126, 16405-16415
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 16405-16415
-
-
Hazel, P.1
Huppert, J.2
Balasubramanian, S.3
Neidle, S.4
-
21
-
-
3042671689
-
Influence of loop size on the stability of intramolecular DNA quadruplexes
-
Risitano, A. and Fox, K. R. (2004) Influence of loop size on the stability of intramolecular DNA quadruplexes Nucleic Acids Res. 32, 2598-2606
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 2598-2606
-
-
Risitano, A.1
Fox, K.R.2
-
22
-
-
34547646128
-
Intramolecular DNA quadruplexes with different arrangements of short and long loops
-
Rachwal, P. A., Findlow, I. S., Werner, J. M., Brown, T., and Fox, K. R. (2007) Intramolecular DNA quadruplexes with different arrangements of short and long loops Nucleic Acids Res. 35, 4214-4222
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 4214-4222
-
-
Rachwal, P.A.1
Findlow, I.S.2
Werner, J.M.3
Brown, T.4
Fox, K.R.5
-
24
-
-
0027207078
-
Effect of thymine tract length on the structure and stability of model telomeric sequences
-
Guo, Q., Lu, M., and Kallenbach, N. R. (1993) Effect of thymine tract length on the structure and stability of model telomeric sequences Biochemistry 32, 3596-3603
-
(1993)
Biochemistry
, vol.32
, pp. 3596-3603
-
-
Guo, Q.1
Lu, M.2
Kallenbach, N.R.3
-
25
-
-
33947359032
-
Effect of G-tract length on the topology and stability of intramolecular DNA quadruplexes
-
Rachwal, P. A., Brown, T., and Fox, K. R. (2007) Effect of G-tract length on the topology and stability of intramolecular DNA quadruplexes Biochemistry 46, 3036-3044
-
(2007)
Biochemistry
, vol.46
, pp. 3036-3044
-
-
Rachwal, P.A.1
Brown, T.2
Fox, K.R.3
-
29
-
-
33646943863
-
Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution
-
DOI 10.1093/nar/gkl348
-
Ambrus, A., Chen, D., Dai, J., Bialis, T., Jones, R. A., and Yang, D. (2006) Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution Nucleic Acids Res. 34, 2723-2735 (Pubitemid 43985634)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.9
, pp. 2723-2735
-
-
Ambrus, A.1
Chen, D.2
Dai, J.3
Bialis, T.4
Jones, R.A.5
Yang, D.6
-
31
-
-
0027318513
-
Macromolecular crowding: Biochemical, biophysical, and physiological consequences
-
Zimmerman, S. B. and Minton, A. P. (1993) Macromolecular crowding: Biochemical, biophysical, and physiological consequences Annu. Rev. Biophys. Biomol. Struct. 22, 27-65
-
(1993)
Annu. Rev. Biophys. Biomol. Struct.
, vol.22
, pp. 27-65
-
-
Zimmerman, S.B.1
Minton, A.P.2
-
32
-
-
0035815743
-
The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological media
-
Minton, A. P. (2001) The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological media J. Biol. Chem. 276, 10577-10580
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 10577-10580
-
-
Minton, A.P.1
-
33
-
-
0037080342
-
Crowding by trisaccharides and the 2:1 cytochrome c-cytochrome c peroxidase complex
-
Morar, A. S. and Pielak, G. J. (2002) Crowding by trisaccharides and the 2:1 cytochrome c-cytochrome c peroxidase complex Biochemistry 41, 547-551
-
(2002)
Biochemistry
, vol.41
, pp. 547-551
-
-
Morar, A.S.1
Pielak, G.J.2
-
34
-
-
45849086552
-
Molecular crowding effects on structure and stability of DNA
-
Miyoshi, D. and Sugimoto, N. (2008) Molecular crowding effects on structure and stability of DNA Biochimie 9, 1040-1051
-
(2008)
Biochimie
, vol.9
, pp. 1040-1051
-
-
Miyoshi, D.1
Sugimoto, N.2
-
35
-
-
23844438712
-
Not so crystal clear: The structure of the human telomere G-quadruplex in solution differs from that present in a crystal
-
Li, J., Correia, J. J., Wang, L., Trent, J. O., and Chaires, J. B. (2005) Not so crystal clear: The structure of the human telomere G-quadruplex in solution differs from that present in a crystal Nucleic Acids Res. 33, 4649-4659
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 4649-4659
-
-
Li, J.1
Correia, J.J.2
Wang, L.3
Trent, J.O.4
Chaires, J.B.5
-
36
-
-
0345868518
-
Duplex dissociation of telomere DNAs induced by molecular crowding
-
Miyoshi, D., Matsumura, S., Nakano, S., and Sugimoto, N. (2004) Duplex dissociation of telomere DNAs induced by molecular crowding J. Am. Chem. Soc. 126, 165-169
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 165-169
-
-
Miyoshi, D.1
Matsumura, S.2
Nakano, S.3
Sugimoto, N.4
-
37
-
-
0037126694
-
Molecular crowding regulates the structural switch of the DNA G-quadruplex
-
Miyoshi, D., Nakao, A., and Sugimoto, N. (2002) Molecular crowding regulates the structural switch of the DNA G-quadruplex Biochemistry 41, 15017-15024
-
(2002)
Biochemistry
, vol.41
, pp. 15017-15024
-
-
Miyoshi, D.1
Nakao, A.2
Sugimoto, N.3
-
38
-
-
33745374520
-
Hydration regulates thermodynamics of G-quadruplex formation under molecular crowding conditions
-
Miyoshi, D., Karimata, H., and Sugimoto, N. (2006) Hydration regulates thermodynamics of G-quadruplex formation under molecular crowding conditions J. Am. Chem. Soc. 128, 7957-7963
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 7957-7963
-
-
Miyoshi, D.1
Karimata, H.2
Sugimoto, N.3
-
39
-
-
34250869522
-
Human telomere quadruplex: Refolding and selection of individual conformers via RNA/DNA chimeric editing
-
Qi, J. and Shafer, R. H. (2007) Human telomere quadruplex: Refolding and selection of individual conformers via RNA/DNA chimeric editing Biochemistry 46, 7599-7606
-
(2007)
Biochemistry
, vol.46
, pp. 7599-7606
-
-
Qi, J.1
Shafer, R.H.2
-
40
-
-
69949186768
-
A comparison of DNA and RNA quadruplex structures and stabilities
-
Joachimi, A., Benz, A., and Hartig, J. S. (2009) A comparison of DNA and RNA quadruplex structures and stabilities Bioorg. Med. Chem. 17, 6811-6815
-
(2009)
Bioorg. Med. Chem.
, vol.17
, pp. 6811-6815
-
-
Joachimi, A.1
Benz, A.2
Hartig, J.S.3
-
41
-
-
67649756727
-
Structure of long telomeric RNA transcripts: The G-rich RNA forms a compact repeating structure containing G-quartets
-
Randall, A. and Griffith, J. D. (2009) Structure of long telomeric RNA transcripts: The G-rich RNA forms a compact repeating structure containing G-quartets J. Biol. Chem. 284, 13980-13986
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 13980-13986
-
-
Randall, A.1
Griffith, J.D.2
-
42
-
-
61749086986
-
Energetic and hydration contributions of the removal of methyl groups from thymine to form uracil in G-quadruplexes
-
Olsen, C. M. and Marky, L. A. (2009) Energetic and hydration contributions of the removal of methyl groups from thymine to form uracil in G-quadruplexes J. Phys. Chem. B 113, 9-11
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 9-11
-
-
Olsen, C.M.1
Marky, L.A.2
-
43
-
-
65249160660
-
Unfolding thermodynamics of intramolecular G-quadruplexes: Base sequence contributions of the loops
-
Olsen, C. M., Lee, H. T., and Marky, L. A. (2009) Unfolding thermodynamics of intramolecular G-quadruplexes: Base sequence contributions of the loops J. Phys. Chem. B 113, 2587-2595
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 2587-2595
-
-
Olsen, C.M.1
Lee, H.T.2
Marky, L.A.3
-
44
-
-
67651207528
-
Differential biophysical behavior of human telomeric RNA and DNA quadruplex
-
Arora, A. and Maiti, S. (2009) Differential biophysical behavior of human telomeric RNA and DNA quadruplex J. Phys. Chem. B 113, 10515-11520
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 10515-11520
-
-
Arora, A.1
Maiti, S.2
-
46
-
-
0037418563
-
Metabolic buffering exerted by macromolecular crowding on DNA-DNA interactions: Origin and physiological significance
-
Goobes, R., Kahana, N., Cohen, O., and Minsky, A. (2003) Metabolic buffering exerted by macromolecular crowding on DNA-DNA interactions: Origin and physiological significance Biochemistry 42, 2431-2440
-
(2003)
Biochemistry
, vol.42
, pp. 2431-2440
-
-
Goobes, R.1
Kahana, N.2
Cohen, O.3
Minsky, A.4
-
50
-
-
0023662325
-
Molecular analysis of mbcl -2: Structure and expression of the murine gene homologous to the human gene involved in follicular lymphoma
-
Negrini, M., Silini, E., Kozak, C., Tsujimoto, Y., and Croce, C. M. (1987) Molecular analysis of mbcl -2: Structure and expression of the murine gene homologous to the human gene involved in follicular lymphoma Cell 49, 455-463
-
(1987)
Cell
, vol.49
, pp. 455-463
-
-
Negrini, M.1
Silini, E.2
Kozak, C.3
Tsujimoto, Y.4
Croce, C.M.5
-
51
-
-
0019558179
-
Structure of a B-DNA dodecamer: Conformation and dynamics
-
Drew, H. R., Wing, R. M., Takano, T., Broka, C., Tanaka, S., Itakura, K., and Dickerson, R. E. (1981) Structure of a B-DNA dodecamer: Conformation and dynamics Proc. Natl. Acad. Sci. U.S.A. 78, 2179-2183
-
(1981)
Proc. Natl. Acad. Sci. U.S.A.
, vol.78
, pp. 2179-2183
-
-
Drew, H.R.1
Wing, R.M.2
Takano, T.3
Broka, C.4
Tanaka, S.5
Itakura, K.6
Dickerson, R.E.7
-
52
-
-
14844353406
-
The effect of chemical modifications on the thermal stability of different G-quadruplex-forming oligonucleotides
-
Sacca, B., Lacroix, L., and Mergny, J. L. (2005) The effect of chemical modifications on the thermal stability of different G-quadruplex-forming oligonucleotides Nucleic Acids Res. 33, 1182-1192
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 1182-1192
-
-
Sacca, B.1
Lacroix, L.2
Mergny, J.L.3
-
53
-
-
7744221005
-
The effect of molecular crowding with nucleotide length and cosolute structure on DNA duplex stability
-
Nakano, S., Karimata, H., Ohmichi, T., Kawakami, J., and Sugimoto, N. (2004) The effect of molecular crowding with nucleotide length and cosolute structure on DNA duplex stability J. Am. Chem. Soc. 126, 14330-14331
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 14330-14331
-
-
Nakano, S.1
Karimata, H.2
Ohmichi, T.3
Kawakami, J.4
Sugimoto, N.5
-
54
-
-
0021149553
-
'Z-RNA': A left-handed RNA double helix
-
Hall, K., Cruz, P., Tinoco, I., Jovin, T. M., and van de Sande, J. H. (1984) 'Z-RNA': A left-handed RNA double helix Nature 311, 584-586
-
(1984)
Nature
, vol.311
, pp. 584-586
-
-
Hall, K.1
Cruz, P.2
Tinoco, I.3
Jovin, T.M.4
Van De Sande, J.H.5
-
56
-
-
0029956116
-
RNA hydration: A detailed look
-
Egli, M., Portmann, S., and Usman, N. (1996) RNA hydration: A detailed look Biochemistry 35, 8489-8494
-
(1996)
Biochemistry
, vol.35
, pp. 8489-8494
-
-
Egli, M.1
Portmann, S.2
Usman, N.3
-
57
-
-
0036290781
-
Crystal structure of the potassium form of an Oxytricha nova G-quadruplex
-
Haider, S., Parkinson, G. N., and Neidle, S. (2002) Crystal structure of the potassium form of an Oxytricha nova G-quadruplex J. Mol. Biol. 320, 189-200
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 189-200
-
-
Haider, S.1
Parkinson, G.N.2
Neidle, S.3
-
58
-
-
33644778701
-
Base-tetrad swapping results in dimerization of RNA quadruplexes: Implications for formation of the i-motif RNA octaplex
-
Pan, B., Shi, K., and Sundaralingam, M. (2006) Base-tetrad swapping results in dimerization of RNA quadruplexes: Implications for formation of the i-motif RNA octaplex Proc. Natl. Acad. Sci. U.S.A. 103, 3130-3134
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 3130-3134
-
-
Pan, B.1
Shi, K.2
Sundaralingam, M.3
|