메뉴 건너뛰기




Volumn 53, Issue 23, 2014, Pages 3711-3718

In the sense of transcription regulation by G-quadruplexes: Asymmetric effects in sense and antisense strands

Author keywords

[No Author keywords available]

Indexed keywords

LIGANDS; NUCLEIC ACIDS; TRANSCRIPTION;

EID: 84902587889     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi401451q     Document Type: Article
Times cited : (50)

References (39)
  • 1
    • 0024969235 scopus 로고
    • DNA structure. the turn of the quadruplex?
    • Frank-Kamenetskii, M. (1989) DNA structure. The turn of the quadruplex? Nature 342, 737
    • (1989) Nature , vol.342 , pp. 737
    • Frank-Kamenetskii, M.1
  • 2
    • 0027412191 scopus 로고
    • QUAD, a protein from hepatocyte chromatin that binds selectively to guanine-rich quadruplex DNA
    • Weisman-Shomer, P. and Fry, M. (1993) QUAD, a protein from hepatocyte chromatin that binds selectively to guanine-rich quadruplex DNA J. Biol. Chem. 268, 3306-3312
    • (1993) J. Biol. Chem. , vol.268 , pp. 3306-3312
    • Weisman-Shomer, P.1    Fry, M.2
  • 3
    • 77955487510 scopus 로고    scopus 로고
    • Human Pif1 helicase is a G-quadruplex DNA-binding protein with G-quadruplex DNA-unwinding activity
    • Sanders, C. M. (2010) Human Pif1 helicase is a G-quadruplex DNA-binding protein with G-quadruplex DNA-unwinding activity Biochem. J. 430, 119-128
    • (2010) Biochem. J. , vol.430 , pp. 119-128
    • Sanders, C.M.1
  • 4
    • 23344451160 scopus 로고    scopus 로고
    • Human POT1 disrupts telomeric G-quadruplexes allowing telomerase extension in vitro
    • Zaug, A. J., Podell, E. R., and Cech, T. R. (2005) Human POT1 disrupts telomeric G-quadruplexes allowing telomerase extension in vitro Proc. Natl. Acad. Sci. U.S.A. 102, 10864-10869
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , pp. 10864-10869
    • Zaug, A.J.1    Podell, E.R.2    Cech, T.R.3
  • 5
    • 79952520900 scopus 로고    scopus 로고
    • Identification of Ewing's sarcoma protein as a G-quadruplex DNA- and RNA-binding protein
    • Takahama, K., Kino, K., Arai, S., Kurokawa, R., and Oyoshi, T. (2011) Identification of Ewing's sarcoma protein as a G-quadruplex DNA- and RNA-binding protein FEBS J. 278, 988-998
    • (2011) FEBS J. , vol.278 , pp. 988-998
    • Takahama, K.1    Kino, K.2    Arai, S.3    Kurokawa, R.4    Oyoshi, T.5
  • 6
    • 0035018021 scopus 로고    scopus 로고
    • G-quadruplex DNA structures - Variations on a theme
    • Simonsson, T. (2001) G-quadruplex DNA structures - variations on a theme Biol. Chem. 382, 621-628
    • (2001) Biol. Chem. , vol.382 , pp. 621-628
    • Simonsson, T.1
  • 7
    • 0037015078 scopus 로고    scopus 로고
    • Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription
    • Siddiqui-Jain, A., Grand, C. L., Bearss, D. J., and Hurley, L. H. (2002) Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription Proc. Natl. Acad. Sci. U.S.A. 99, 11593-11598
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 11593-11598
    • Siddiqui-Jain, A.1    Grand, C.L.2    Bearss, D.J.3    Hurley, L.H.4
  • 9
    • 42249101229 scopus 로고    scopus 로고
    • The proximal promoter region of the human vascular endothelial growth factor gene has a G-quadruplex structure that can be targeted by G-quadruplex-interactive agents
    • Sun, D., Liu, W. J., Guo, K., Rusche, J. J., Ebbinghaus, S., Gokhale, V., and Hurley, L. H. (2008) The proximal promoter region of the human vascular endothelial growth factor gene has a G-quadruplex structure that can be targeted by G-quadruplex-interactive agents Mol. Cancer. Ther. 7, 880-889
    • (2008) Mol. Cancer. Ther. , vol.7 , pp. 880-889
    • Sun, D.1    Liu, W.J.2    Guo, K.3    Rusche, J.J.4    Ebbinghaus, S.5    Gokhale, V.6    Hurley, L.H.7
  • 10
    • 77953211752 scopus 로고    scopus 로고
    • Turning off transcription of the bcl-2 gene by stabilizing the bcl-2 promoter quadruplex with quindoline derivatives
    • Wang, X. D., Ou, T. M., Lu, Y. J., Li, Z., Xu, Z., Xi, C., Tan, J. H., Huang, S. L., An, L. K., Li, D., Gu, L. Q., and Huang, Z. S. (2010) Turning off transcription of the bcl-2 gene by stabilizing the bcl-2 promoter quadruplex with quindoline derivatives J. Med. Chem. 53, 4390-4398
    • (2010) J. Med. Chem. , vol.53 , pp. 4390-4398
    • Wang, X.D.1    Ou, T.M.2    Lu, Y.J.3    Li, Z.4    Xu, Z.5    Xi, C.6    Tan, J.H.7    Huang, S.L.8    An, L.K.9    Li, D.10    Gu, L.Q.11    Huang, Z.S.12
  • 11
    • 34447541999 scopus 로고    scopus 로고
    • RNA quadruplex-based modulation of gene expression
    • Wieland, M. and Hartig, J. S. (2007) RNA quadruplex-based modulation of gene expression Chem. Biol. 14, 757-763
    • (2007) Chem. Biol. , vol.14 , pp. 757-763
    • Wieland, M.1    Hartig, J.S.2
  • 12
    • 33947310727 scopus 로고    scopus 로고
    • An RNA G-quadruplex in the 5′ UTR of the NRAS proto-oncogene modulates translation
    • Kumari, S., Bugaut, A., Huppert, J. L., and Balasubramanian, S. (2007) An RNA G-quadruplex in the 5′ UTR of the NRAS proto-oncogene modulates translation Nat. Chem. Biol. 3, 218-221
    • (2007) Nat. Chem. Biol. , vol.3 , pp. 218-221
    • Kumari, S.1    Bugaut, A.2    Huppert, J.L.3    Balasubramanian, S.4
  • 13
    • 45749139174 scopus 로고    scopus 로고
    • Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif
    • Arora, A., Dutkiewicz, M., Scaria, V., Hariharan, M., Maiti, S., and Kurreck, J. (2008) Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif RNA 14, 1290-1296
    • (2008) RNA , vol.14 , pp. 1290-1296
    • Arora, A.1    Dutkiewicz, M.2    Scaria, V.3    Hariharan, M.4    Maiti, S.5    Kurreck, J.6
  • 14
    • 67049134254 scopus 로고    scopus 로고
    • An unusually stable G-quadruplex within the 5′-UTR of the MT3 matrix metalloproteinase mRNA represses translation in eukaryotic cells
    • Morris, M. J. and Basu, S. (2009) An unusually stable G-quadruplex within the 5′-UTR of the MT3 matrix metalloproteinase mRNA represses translation in eukaryotic cells Biochemistry 48, 5313-5319
    • (2009) Biochemistry , vol.48 , pp. 5313-5319
    • Morris, M.J.1    Basu, S.2
  • 15
    • 73349103817 scopus 로고    scopus 로고
    • Predictable suppression of gene expression by 5′-UTR-based RNA quadruplexes
    • Halder, K., Wieland, M., and Hartig, J. S. (2009) Predictable suppression of gene expression by 5′-UTR-based RNA quadruplexes Nucleic Acids Res. 37, 6811-6817
    • (2009) Nucleic Acids Res. , vol.37 , pp. 6811-6817
    • Halder, K.1    Wieland, M.2    Hartig, J.S.3
  • 16
    • 67649218406 scopus 로고    scopus 로고
    • Stability and molecular recognition of quadruplexes with different loop length in the absence and presence of molecular crowding agents
    • Arora, A. and Maiti, S. (2009) Stability and molecular recognition of quadruplexes with different loop length in the absence and presence of molecular crowding agents J. Phys. Chem. B 113, 8784-8792
    • (2009) J. Phys. Chem. B , vol.113 , pp. 8784-8792
    • Arora, A.1    Maiti, S.2
  • 17
    • 78649850820 scopus 로고    scopus 로고
    • How long is too long? Effects of loop size on G-quadruplex stability
    • Guédin, A., Gros, J., Alberti, P., and Mergny, J. L. (2010) How long is too long? Effects of loop size on G-quadruplex stability Nucleic Acids Res. 38, 7858-7868
    • (2010) Nucleic Acids Res. , vol.38 , pp. 7858-7868
    • Guédin, A.1    Gros, J.2    Alberti, P.3    Mergny, J.L.4
  • 18
    • 67650500797 scopus 로고    scopus 로고
    • Effect of flanking bases on quadruplex stability and Watson-Crick duplex competition
    • Arora, A., Nair, D. R., and Maiti, S. (2009) Effect of flanking bases on quadruplex stability and Watson-Crick duplex competition FEBS J. 276, 3628-3640
    • (2009) FEBS J. , vol.276 , pp. 3628-3640
    • Arora, A.1    Nair, D.R.2    Maiti, S.3
  • 19
    • 0033528756 scopus 로고    scopus 로고
    • Determinants of DNA quadruplex structural type: Sequence and potassium binding
    • Marathias, V. M. and Bolton, P. H. (1999) Determinants of DNA quadruplex structural type: sequence and potassium binding Biochemistry 38, 4355-4364
    • (1999) Biochemistry , vol.38 , pp. 4355-4364
    • Marathias, V.M.1    Bolton, P.H.2
  • 20
    • 0033178271 scopus 로고    scopus 로고
    • The effect of sodium, potassium and ammonium ions on the conformation of the dimeric quadruplex formed by the Oxytricha nova telomere repeat oligonucleotide d(G(4)T(4)G(4)
    • Schultze, P., Hud, N. V., Smith, F. W., and Feigon, J. (1999) The effect of sodium, potassium and ammonium ions on the conformation of the dimeric quadruplex formed by the Oxytricha nova telomere repeat oligonucleotide d(G(4)T(4)G(4) Nucleic Acids Res. 27, 3018-3028
    • (1999) Nucleic Acids Res. , vol.27 , pp. 3018-3028
    • Schultze, P.1    Hud, N.V.2    Smith, F.W.3    Feigon, J.4
  • 21
    • 39049147645 scopus 로고    scopus 로고
    • A hitchhiker's guide to G-quadruplex ligands
    • Monchaud, D. and Teulade-Fichou, M. P. (2008) A hitchhiker's guide to G-quadruplex ligands Org. Biomol. Chem. 6, 627-636
    • (2008) Org. Biomol. Chem. , vol.6 , pp. 627-636
    • Monchaud, D.1    Teulade-Fichou, M.P.2
  • 22
    • 33644833219 scopus 로고    scopus 로고
    • Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter
    • Erratum in Nat. Chem. Biol. 1, 234
    • Phan, A. T., Kuryavyi, V., Gaw, H. Y., and Patel, D. J. (2005) Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter Nat. Chem. Biol. 1, 167-173 Erratum in Nat. Chem. Biol. 1, 234
    • (2005) Nat. Chem. Biol. , vol.1 , pp. 167-173
    • Phan, A.T.1    Kuryavyi, V.2    Gaw, H.Y.3    Patel, D.J.4
  • 25
    • 0035913742 scopus 로고    scopus 로고
    • Selective interactions of cationic porphyrins with G-quadruplex structures
    • Han, H., Langley, D. R., Rangan, A., and Hurley, L. H. (2001) Selective interactions of cationic porphyrins with G-quadruplex structures J. Am. Chem. Soc. 123, 8902-8913
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 8902-8913
    • Han, H.1    Langley, D.R.2    Rangan, A.3    Hurley, L.H.4
  • 26
    • 0037731436 scopus 로고    scopus 로고
    • The different biological effects of telomestatin and TMPyP4 can be attributed to their selectivity for interaction with intramolecular or intermolecular G-quadruplex structures
    • Kim, M. Y., Gleason-Guzman, M., Izbicka, E., Nishioka, D., and Hurley, L. H. (2010) The different biological effects of telomestatin and TMPyP4 can be attributed to their selectivity for interaction with intramolecular or intermolecular G-quadruplex structures Cancer. Res. 63, 3247-3256
    • (2010) Cancer. Res. , vol.63 , pp. 3247-3256
    • Kim, M.Y.1    Gleason-Guzman, M.2    Izbicka, E.3    Nishioka, D.4    Hurley, L.H.5
  • 27
    • 36049036159 scopus 로고    scopus 로고
    • Factors regulating thermodynamic stability of DNA structures under molecular crowding conditions
    • Miyoshi, D., Karimata, H., and Sugimoto, N. (2006) Factors regulating thermodynamic stability of DNA structures under molecular crowding conditions Nucleic Acids Symp. Ser. 50, 203-204
    • (2006) Nucleic Acids Symp. Ser. , vol.50 , pp. 203-204
    • Miyoshi, D.1    Karimata, H.2    Sugimoto, N.3
  • 28
    • 77952870567 scopus 로고    scopus 로고
    • Monomorphic RNA G-quadruplex and polymorphic DNA G-quadruplex structures responding to cellular environmental factors
    • Zhang, D. H., Fujimoto, T., Saxena, S., Yu, H. Q., Miyoshi, D., and Sugimoto, N. (2010) Monomorphic RNA G-quadruplex and polymorphic DNA G-quadruplex structures responding to cellular environmental factors Biochemistry 49, 4554-4563
    • (2010) Biochemistry , vol.49 , pp. 4554-4563
    • Zhang, D.H.1    Fujimoto, T.2    Saxena, S.3    Yu, H.Q.4    Miyoshi, D.5    Sugimoto, N.6
  • 29
    • 79959509289 scopus 로고    scopus 로고
    • Structure of human telomeric DNA in crowded solution
    • Heddi, B. and Phan, A. T. (2011) Structure of human telomeric DNA in crowded solution J. Am. Chem. Soc. 133, 9824-9833
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 9824-9833
    • Heddi, B.1    Phan, A.T.2
  • 30
    • 39049170386 scopus 로고    scopus 로고
    • Genome-wide analysis reveals regulatory role of G4 DNA in gene transcription
    • Du, Z., Zhao, Y., and Li, N. (2008) Genome-wide analysis reveals regulatory role of G4 DNA in gene transcription Genome Res. 18, 233-241
    • (2008) Genome Res. , vol.18 , pp. 233-241
    • Du, Z.1    Zhao, Y.2    Li, N.3
  • 31
    • 0029956118 scopus 로고    scopus 로고
    • Inability of RNA to form the i-motif: Implications for triplex formation
    • Lacroix, L., Mergny, J. L., Leroy, J. L., and Hélène, C. (1996) Inability of RNA to form the i-motif: implications for triplex formation Biochemistry 35, 8715-8722
    • (1996) Biochemistry , vol.35 , pp. 8715-8722
    • Lacroix, L.1    Mergny, J.L.2    Leroy, J.L.3    Hélène, C.4
  • 33
    • 77957044322 scopus 로고    scopus 로고
    • Selective targeting of G-quadruplex using furan-based cyclic homooligopeptides: Effect on c-MYC expression
    • Agarwal, T., Roy, S., Chakraborty, T. K., and Maiti, S. (2010) Selective targeting of G-quadruplex using furan-based cyclic homooligopeptides: effect on c-MYC expression Biochemistry 49, 8388-8397
    • (2010) Biochemistry , vol.49 , pp. 8388-8397
    • Agarwal, T.1    Roy, S.2    Chakraborty, T.K.3    Maiti, S.4
  • 34
    • 36148978139 scopus 로고    scopus 로고
    • Furan based cyclic oligopeptides selectively target G-quadruplex
    • Chakraborty, T. K., Arora, A., Roy, S., Kumar, N., and Maiti, S. (2007) Furan based cyclic oligopeptides selectively target G-quadruplex J. Med. Chem. 50, 5539-5542
    • (2007) J. Med. Chem. , vol.50 , pp. 5539-5542
    • Chakraborty, T.K.1    Arora, A.2    Roy, S.3    Kumar, N.4    Maiti, S.5
  • 35
    • 77955423929 scopus 로고    scopus 로고
    • Furan based cyclic homo-oligopeptides bind G-quadruplex selectively and repress c-MYC transcription
    • Agarwal, T., Roy, S., Chakraborty, T. K., and Maiti, S. (2010) Furan based cyclic homo-oligopeptides bind G-quadruplex selectively and repress c-MYC transcription Bioorg. Med. Chem. Lett. 20, 4346-4349
    • (2010) Bioorg. Med. Chem. Lett. , vol.20 , pp. 4346-4349
    • Agarwal, T.1    Roy, S.2    Chakraborty, T.K.3    Maiti, S.4
  • 37
    • 79955864551 scopus 로고    scopus 로고
    • Transcription arrest by a G quadruplex forming-trinucleotide repeat sequence from the human c-myb gene
    • Broxson, C., Beckett, J., and Tornaletti, S. (2011) Transcription arrest by a G quadruplex forming-trinucleotide repeat sequence from the human c-myb gene Biochemistry 50, 4162-4172
    • (2011) Biochemistry , vol.50 , pp. 4162-4172
    • Broxson, C.1    Beckett, J.2    Tornaletti, S.3
  • 38
    • 45149134017 scopus 로고    scopus 로고
    • G4-forming sequences in the non-transcribed DNA strand pose blocks to T7 RNA polymerase and mammalian RNA polymerase II
    • Tornaletti, S., Park-Snyder, S., and Hanawalt, P. C. (2008) G4-forming sequences in the non-transcribed DNA strand pose blocks to T7 RNA polymerase and mammalian RNA polymerase II J. Biol. Chem. 283, 12756-12762
    • (2008) J. Biol. Chem. , vol.283 , pp. 12756-12762
    • Tornaletti, S.1    Park-Snyder, S.2    Hanawalt, P.C.3
  • 39
    • 1842685197 scopus 로고    scopus 로고
    • Effect of 8-oxoguanine on transcription elongation by T7 RNA polymerase and mammalian RNA polymerase II
    • Tornaletti, S., Maeda, L. S., Kolodner, R. D., and Hanawalt, P. C. (2004) Effect of 8-oxoguanine on transcription elongation by T7 RNA polymerase and mammalian RNA polymerase II DNA Repair 3, 483-494
    • (2004) DNA Repair , vol.3 , pp. 483-494
    • Tornaletti, S.1    Maeda, L.S.2    Kolodner, R.D.3    Hanawalt, P.C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.