-
1
-
-
35748937058
-
Quartets in G-major. The First International Meeting on Quadruplex DNA
-
Bates,P., Mergny,J.L. and Yang,D. (2007) Quartets in G-major. The First International Meeting on Quadruplex DNA. EMBO Rep., 8, 1003-1010.
-
(2007)
EMBO Rep
, vol.8
, pp. 1003-1010
-
-
Bates, P.1
Mergny, J.L.2
Yang, D.3
-
2
-
-
38049030699
-
Human telomere, oncogenic promoter and 5′-UTR G-quadruplexes: Diverse higher order DNA and RNA targets for cancer therapeutics
-
Patel,D.J., Phan,A.T. and Kuryavyi,V. (2007) Human telomere, oncogenic promoter and 5′-UTR G-quadruplexes: Diverse higher order DNA and RNA targets for cancer therapeutics. Nucleic Acids Res., 35, 7429-7455.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7429-7455
-
-
Patel, D.J.1
Phan, A.T.2
Kuryavyi, V.3
-
3
-
-
35648953239
-
First International Meeting on Quadruplex DNA
-
Wilson,W.D. and Sugiyama,H. (2007) First International Meeting on Quadruplex DNA. ACS Chem. Biol., 2, 589-594.
-
(2007)
ACS Chem. Biol
, vol.2
, pp. 589-594
-
-
Wilson, W.D.1
Sugiyama, H.2
-
4
-
-
67949085375
-
Ascent Of quadruplexes-nucleic acid structures become promising drug targets
-
Stuart,A.B. (2007) Ascent Of quadruplexes-nucleic acid structures become promising drug targets. Chem. Eng. News, 85.
-
(2007)
Chem. Eng. News
, vol.85
-
-
Stuart, A.B.1
-
5
-
-
33751020853
-
Quadruplex DNA: Sequence, topology and structure
-
Burge,S., Parkinson,G.N., Hazel,P., Todd,A.K. and Neidle,S. (2006) Quadruplex DNA: Sequence, topology and structure. Nucleic Acids Res. 34, 5402-5415.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5402-5415
-
-
Burge, S.1
Parkinson, G.N.2
Hazel, P.3
Todd, A.K.4
Neidle, S.5
-
6
-
-
0026761859
-
Hairpin and parallel quartet structures for telomeric sequences
-
Balagurumoorthy,P., Brahmachari,S.K., Mohanty,D., Bansal,M. and Sasisekharan,V. (1992) Hairpin and parallel quartet structures for telomeric sequences. Nucleic Acids Res., 20, 4061-4067.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 4061-4067
-
-
Balagurumoorthy, P.1
Brahmachari, S.K.2
Mohanty, D.3
Bansal, M.4
Sasisekharan, V.5
-
7
-
-
0027990373
-
Structure and stability of human telomeric sequence
-
Balagurumoorthy,P. and Brahmachari,S.K. (1994) Structure and stability of human telomeric sequence. J. Biol. Chem., 269, 21858-21869.
-
(1994)
J. Biol. Chem
, vol.269
, pp. 21858-21869
-
-
Balagurumoorthy, P.1
Brahmachari, S.K.2
-
8
-
-
0023788886
-
Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis
-
Sen,D. and Gilbert,W. (1988) Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis. Nature, 334, 364-366.
-
(1988)
Nature
, vol.334
, pp. 364-366
-
-
Sen, D.1
Gilbert, W.2
-
9
-
-
27144451010
-
Telomere end-binding proteins control the formation of G-quadruplex DNA structures in vivo
-
Paeschke,K., Simonsson,T., Postberg,J., Rhodes,D. and Lipps,H.J. (2005) Telomere end-binding proteins control the formation of G-quadruplex DNA structures in vivo. Nat. Struct. Mol. Biol., 12, 847-854.
-
(2005)
Nat. Struct. Mol. Biol
, vol.12
, pp. 847-854
-
-
Paeschke, K.1
Simonsson, T.2
Postberg, J.3
Rhodes, D.4
Lipps, H.J.5
-
10
-
-
3543039438
-
Detection of quadruplex DNA structures in human telomeres by a fluorescent carbazole derivative
-
Chang,C.C., Kuo,I.C., Ling,I.F., Chen,C.T., Chen,H.C., Lou,P.J., Lin,J.J. and Chang,T.C. (2004) Detection of quadruplex DNA structures in human telomeres by a fluorescent carbazole derivative. Anal. Chem. 76, 4490-4494.
-
(2004)
Anal. Chem
, vol.76
, pp. 4490-4494
-
-
Chang, C.C.1
Kuo, I.C.2
Ling, I.F.3
Chen, C.T.4
Chen, H.C.5
Lou, P.J.6
Lin, J.J.7
Chang, T.C.8
-
11
-
-
0035902465
-
In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia lemnae macronuclei
-
Schaffitzel,C., Berger,I., Postberg,J., Hanes,J., Lipps,H.J. and Pluckthun,A. (2001) In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia lemnae macronuclei. Proc. Natl Acad. Sci. USA, 98, 8572-8577.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 8572-8577
-
-
Schaffitzel, C.1
Berger, I.2
Postberg, J.3
Hanes, J.4
Lipps, H.J.5
Pluckthun, A.6
-
12
-
-
0034722885
-
Telomere maintenance mechanisms as a target for drug development
-
Bearss,D.J., Hurley,L.H. and Von Hoff,D.D. (2000) Telomere maintenance mechanisms as a target for drug development. Oncogene, 19, 6632-6641.
-
(2000)
Oncogene
, vol.19
, pp. 6632-6641
-
-
Bearss, D.J.1
Hurley, L.H.2
Von Hoff, D.D.3
-
13
-
-
0034122135
-
G-Quadruplex DNA as a target for drug design
-
Kerwin,S.M. (2000) G-Quadruplex DNA as a target for drug design. Curr. Pharm. Des., 6, 441-478.
-
(2000)
Curr. Pharm. Des
, vol.6
, pp. 441-478
-
-
Kerwin, S.M.1
-
14
-
-
0032497405
-
NMR-Based model of a telomerase-inhibiting compound bound to G-quadruplex DNA
-
Fedoroff,O.Y., Salazar,M., Han,H., Chemeris,V.V., Kerwin,S.M. and Hurley,L.H. (1998) NMR-Based model of a telomerase-inhibiting compound bound to G-quadruplex DNA. Biochemistry, 37, 12367-12374.
-
(1998)
Biochemistry
, vol.37
, pp. 12367-12374
-
-
Fedoroff, O.Y.1
Salazar, M.2
Han, H.3
Chemeris, V.V.4
Kerwin, S.M.5
Hurley, L.H.6
-
15
-
-
0033083378
-
Effects of cationic porphyrins as G-quadruplex interactive agents in human tumor cells
-
Izbicka,E., Wheelhouse,R.T., Raymond,E., Davidson,K.K., Lawrence,R.A., Sun,D., Windle,B.E., Hurley,L.H. and Von Hoff,D.D. (1999) Effects of cationic porphyrins as G-quadruplex interactive agents in human tumor cells. Cancer Res., 59, 639-644.
-
(1999)
Cancer Res
, vol.59
, pp. 639-644
-
-
Izbicka, E.1
Wheelhouse, R.T.2
Raymond, E.3
Davidson, K.K.4
Lawrence, R.A.5
Sun, D.6
Windle, B.E.7
Hurley, L.H.8
Von Hoff, D.D.9
-
16
-
-
0030786928
-
Inhibition of Human Telomerase by a G-Quadruplex-Interactive Compound
-
Sun,D., Thompson,B., Cathers,B.E., Salazar,M., Kerwin,S.M., Trent,J.O., Jenkins,T.C., Neidle,S. and Hurley,L.H. (1997) Inhibition of Human Telomerase by a G-Quadruplex-Interactive Compound. J. Med. Chem., 40, 2113-2116.
-
(1997)
J. Med. Chem
, vol.40
, pp. 2113-2116
-
-
Sun, D.1
Thompson, B.2
Cathers, B.E.3
Salazar, M.4
Kerwin, S.M.5
Trent, J.O.6
Jenkins, T.C.7
Neidle, S.8
Hurley, L.H.9
-
17
-
-
12344274594
-
Porphyrin derivatives for telomere binding and telomerase inhibition
-
Dixon,I.M., Lopez,F., Esteve,J.P., Tejera,A.M., Blasco,M.A., Pratviel,G. and Meunier,B. (2005) Porphyrin derivatives for telomere binding and telomerase inhibition. Chembiochem, 6, 123-132.
-
(2005)
Chembiochem
, vol.6
, pp. 123-132
-
-
Dixon, I.M.1
Lopez, F.2
Esteve, J.P.3
Tejera, A.M.4
Blasco, M.A.5
Pratviel, G.6
Meunier, B.7
-
18
-
-
3242691283
-
The dynamic character of the G-quadruplex element in the c-MYC promoter and modification by TMPyP4
-
Seenisamy,J., Rezler,E.M., Powell,T.J., Tye,D., Gokhale,V., Joshi,C.S., Siddiqui-Jain,A. and Hurley,L.H. (2004) The dynamic character of the G-quadruplex element in the c-MYC promoter and modification by TMPyP4. J. Am. Chem. Soc., 126, 8702-8709.
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 8702-8709
-
-
Seenisamy, J.1
Rezler, E.M.2
Powell, T.J.3
Tye, D.4
Gokhale, V.5
Joshi, C.S.6
Siddiqui-Jain, A.7
Hurley, L.H.8
-
19
-
-
0030573027
-
Structure-function correlations of the insulin-linked polymorphic region
-
Catasti,P., Chen,X., Moyzis,R.K., Bradbury,E.M. and Gupta,G. (1996) Structure-function correlations of the insulin-linked polymorphic region. J. Mol. Biol., 264, 534-545.
-
(1996)
J. Mol. Biol
, vol.264
, pp. 534-545
-
-
Catasti, P.1
Chen, X.2
Moyzis, R.K.3
Bradbury, E.M.4
Gupta, G.5
-
20
-
-
0037015078
-
Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription
-
Siddiqui-Jain,A., Grand,C.L., Bearss,D.J. and Hurley,L.H. (2002) Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription. Proc. Natl. Acad. Sci. USA, 99, 11593-11598.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 11593-11598
-
-
Siddiqui-Jain, A.1
Grand, C.L.2
Bearss, D.J.3
Hurley, L.H.4
-
21
-
-
38049017592
-
Characterization of the G-quadruplexes in the duplex nuclease hypersensitive element of the PDGF-A promoter and modulation of PDGF-A promoter activity by TMPyP4
-
Qin,Y., Rezler,E.M., Gokhale,V., Sun,D. and Hurley,L.H. (2007) Characterization of the G-quadruplexes in the duplex nuclease hypersensitive element of the PDGF-A promoter and modulation of PDGF-A promoter activity by TMPyP4. Nucleic Acids Res., 35, 7698-7713.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7698-7713
-
-
Qin, Y.1
Rezler, E.M.2
Gokhale, V.3
Sun, D.4
Hurley, L.H.5
-
22
-
-
0028362201
-
The fragile X syndrome d(CGG)n nucleotide repeats form a stable tetrahelical structure
-
Fry,M. and Loeb,L.A. (1994) The fragile X syndrome d(CGG)n nucleotide repeats form a stable tetrahelical structure. Proc. Natl Acad. Sci. USA, 91, 4950-4954.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 4950-4954
-
-
Fry, M.1
Loeb, L.A.2
-
23
-
-
0242349126
-
The cationic porphyrin TMPyP4 destabilizes the tetraplex form of the fragile X syndrome expanded sequence d(CGG)n
-
Weisman-Shomer,P., Cohen,E., Hershco,I., Khateb,S., Wolfovitz-Barchad,O., Hurley,L.H. and Fry,M. (2003) The cationic porphyrin TMPyP4 destabilizes the tetraplex form of the fragile X syndrome expanded sequence d(CGG)n. Nucleic Acids Res., 31, 3963-3970.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3963-3970
-
-
Weisman-Shomer, P.1
Cohen, E.2
Hershco, I.3
Khateb, S.4
Wolfovitz-Barchad, O.5
Hurley, L.H.6
Fry, M.7
-
24
-
-
23044485047
-
Putative DNA quadruplex formation within the human c-kit oncogene
-
Rankin,S., Reszka,A.P., Huppert,J., Zloh,M., Parkinson,G.N., Todd,A.K., Ladame,S., Balasubramanian,S. and Neidle,S. (2005) Putative DNA quadruplex formation within the human c-kit oncogene. J. Am. Chem. Soc., 127, 10584-10589.
-
(2005)
J. Am. Chem. Soc
, vol.127
, pp. 10584-10589
-
-
Rankin, S.1
Reszka, A.P.2
Huppert, J.3
Zloh, M.4
Parkinson, G.N.5
Todd, A.K.6
Ladame, S.7
Balasubramanian, S.8
Neidle, S.9
-
25
-
-
33744472232
-
G-quadruplex formation within the promoter of the KRAS proto-oncogene and its effect on transcription
-
Cogoi,S. and Xodo,L.E. (2006) G-quadruplex formation within the promoter of the KRAS proto-oncogene and its effect on transcription. Nucleic Acids Res., 34, 2536-2549.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 2536-2549
-
-
Cogoi, S.1
Xodo, L.E.2
-
26
-
-
27244435211
-
Facilitation of a structural transition in the polypurine/polypyrimidine tract within the proximal promoter region of the human VEGF gene by the presence of potassium and G-quadruplex-interactive agents
-
Sun,D., Guo,K., Rusche,J.J. and Hurley,L.H. (2005) Facilitation of a structural transition in the polypurine/polypyrimidine tract within the proximal promoter region of the human VEGF gene by the presence of potassium and G-quadruplex-interactive agents. Nucleic Acids Res., 20, 6070-6080.
-
(2005)
Nucleic Acids Res
, vol.20
, pp. 6070-6080
-
-
Sun, D.1
Guo, K.2
Rusche, J.J.3
Hurley, L.H.4
-
27
-
-
31944444804
-
An intramolecular G-quadruplex structure with mixed parallel/antiparallel G-strands formed in the human BCL-2 promoter region in solution
-
Dai,J., Dexheimer,T.S., Chen,D., Carver,M., Ambrus,A., Jones,R.A. and Yang,D. (2006) An intramolecular G-quadruplex structure with mixed parallel/antiparallel G-strands formed in the human BCL-2 promoter region in solution. J. Am. Chem. Soc., 128, 1096-1098.
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 1096-1098
-
-
Dai, J.1
Dexheimer, T.S.2
Chen, D.3
Carver, M.4
Ambrus, A.5
Jones, R.A.6
Yang, D.7
-
28
-
-
33644858313
-
Formation of the G-quadruplex and i-motif structures in retinoblastoma susceptibility genes (Rb)
-
Xu,Y. and Sugiyama,H. (2006) Formation of the G-quadruplex and i-motif structures in retinoblastoma susceptibility genes (Rb). Nucleic Acids Res., 34, 949-954.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 949-954
-
-
Xu, Y.1
Sugiyama, H.2
-
29
-
-
33947310727
-
An RNA G-quadruplex in the 5′ UTR of the NRAS protooncogene modulates translation
-
Kumari,S., Bugaut,A., Huppert,J.L. and Balasubramanian,S. (2007) An RNA G-quadruplex in the 5′ UTR of the NRAS protooncogene modulates translation. Nat. Chem. Biol., 3, 218-221.
-
(2007)
Nat. Chem. Biol
, vol.3
, pp. 218-221
-
-
Kumari, S.1
Bugaut, A.2
Huppert, J.L.3
Balasubramanian, S.4
-
30
-
-
34447541999
-
RNA quadruplex-based modulation of gene expression
-
Wieland,M. and Hartig,J.S. (2007) RNA quadruplex-based modulation of gene expression. Chem. Biol., 14, 757-763.
-
(2007)
Chem. Biol
, vol.14
, pp. 757-763
-
-
Wieland, M.1
Hartig, J.S.2
-
31
-
-
0035909817
-
Inhibition of the Bloom's and Werner's Syndrome Helicases by G-Quadruplex Interacting Ligands
-
Li,J.L., Harrison,R.J., Reszka,A.P., Robert,M., Bohr,V.A., Neidle,S. and Hickson,I.D. (2001) Inhibition of the Bloom's and Werner's Syndrome Helicases by G-Quadruplex Interacting Ligands. Biochemistry, 40 15194-15202.
-
(2001)
Biochemistry
, vol.40
, pp. 15194-15202
-
-
Li, J.L.1
Harrison, R.J.2
Reszka, A.P.3
Robert, M.4
Bohr, V.A.5
Neidle, S.6
Hickson, I.D.7
-
32
-
-
0026575221
-
Selection of single-stranded DNA molecules that bind and inhibit human thrombin
-
Bock,L.C., Griffin,L.C., Latham,J.A., Vermaas,E.H. and Toole,J.J. (1992) Selection of single-stranded DNA molecules that bind and inhibit human thrombin. Nature, 355, 564-566.
-
(1992)
Nature
, vol.355
, pp. 564-566
-
-
Bock, L.C.1
Griffin, L.C.2
Latham, J.A.3
Vermaas, E.H.4
Toole, J.J.5
-
33
-
-
47249119315
-
Differential binding of quadruplex structures of muscle-specific genes regulatory sequences by MyoD, MRF4 and myogenin
-
Yafe,A., Shklover,J., Weisman-Shomer,P., Bengal,E. and Fry,M. (2008) Differential binding of quadruplex structures of muscle-specific genes regulatory sequences by MyoD, MRF4 and myogenin. Nucleic Acids Res. 36, 3916-3925.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 3916-3925
-
-
Yafe, A.1
Shklover, J.2
Weisman-Shomer, P.3
Bengal, E.4
Fry, M.5
-
34
-
-
0026772525
-
MyoD binds to the guanine tetrad nucleic acid structure
-
Walsh,K. and Gualberto,A. (1992) MyoD binds to the guanine tetrad nucleic acid structure. J. Biol. Chem., 267, 13714-13718.
-
(1992)
J. Biol. Chem
, vol.267
, pp. 13714-13718
-
-
Walsh, K.1
Gualberto, A.2
-
35
-
-
0034671853
-
Interaction of human DNA topoisomerase I with G-quartet structures
-
Arimondo,P.B., Riou,J.F., Mergny,J.L., Tazi,J., Sun,J.S., Garestier,T. and Helene,C. (2000) Interaction of human DNA topoisomerase I with G-quartet structures. Nucleic Acids Res., 28, 4832-4838.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 4832-4838
-
-
Arimondo, P.B.1
Riou, J.F.2
Mergny, J.L.3
Tazi, J.4
Sun, J.S.5
Garestier, T.6
Helene, C.7
-
36
-
-
0035940477
-
A human nuclease specific for G4 DNA
-
Sun,H., Yabuki,A. and Maizels,N. (2001) A human nuclease specific for G4 DNA. Proc. Natl Acad. Sci. USA, 98, 12444-12449.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 12444-12449
-
-
Sun, H.1
Yabuki, A.2
Maizels, N.3
-
37
-
-
33745121203
-
Genome-wide prediction of G4 DNA as regulatory motifs: Role in Escherichia coli global regulation
-
Rawal,P., Kummarasetti,V.B., Ravindran,J., Kumar,N., Halder,K., Sharma,R., Mukerji,M., Das,S.K. and Chowdhury,S. (2006) Genome-wide prediction of G4 DNA as regulatory motifs: Role in Escherichia coli global regulation. Genome Res., 16, 644-655.
-
(2006)
Genome Res
, vol.16
, pp. 644-655
-
-
Rawal, P.1
Kummarasetti, V.B.2
Ravindran, J.3
Kumar, N.4
Halder, K.5
Sharma, R.6
Mukerji, M.7
Das, S.K.8
Chowdhury, S.9
-
38
-
-
20144364292
-
Prevalence of quadruplexes in the human genome
-
Huppert,J.L. and Balasubramanian,S. (2005) Prevalence of quadruplexes in the human genome. Nucleic Acids Res., 33, 2908-2916.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2908-2916
-
-
Huppert, J.L.1
Balasubramanian, S.2
-
39
-
-
33846928449
-
G-quadruplexes in promoters throughout the human genome
-
Huppert,J.L. and Balasubramanian,S. (2007) G-quadruplexes in promoters throughout the human genome. Nucleic Acids Res., 35, 406-413.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 406-413
-
-
Huppert, J.L.1
Balasubramanian, S.2
-
40
-
-
38549092075
-
QuadBase: Genome-wide database of G4 DNA occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes
-
Yadav,V.K., Abraham,J.K., Mani,P., Kulshrestha,R. and Chowdhury,S. (2007) QuadBase: Genome-wide database of G4 DNA occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes. Nucleic Acids Res., 36, 381-385.
-
(2007)
Nucleic Acids Res
, vol.36
, pp. 381-385
-
-
Yadav, V.K.1
Abraham, J.K.2
Mani, P.3
Kulshrestha, R.4
Chowdhury, S.5
-
41
-
-
20144369806
-
Highly prevalent putative quadruplex sequence motifs in human DNA
-
Todd,A.K., Johnston,M. and Neidle,S. (2005) Highly prevalent putative quadruplex sequence motifs in human DNA. Nucleic Acids Res., 33 2901-2907.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2901-2907
-
-
Todd, A.K.1
Johnston, M.2
Neidle, S.3
-
42
-
-
52449093394
-
Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species
-
Verma,A., Halder,K., Halder,R., Yadav,V.K., Rawal,P., Thakur,R.K., Mohd,F., Sharma,A. and Chowdhury,S. (2008) Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species. J. Med. Chem. 51, 5641-5649.
-
(2008)
J. Med. Chem
, vol.51
, pp. 5641-5649
-
-
Verma, A.1
Halder, K.2
Halder, R.3
Yadav, V.K.4
Rawal, P.5
Thakur, R.K.6
Mohd, F.7
Sharma, A.8
Chowdhury, S.9
-
43
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher,V.G., Tibshirani,R. and Chu,G. (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl Acad. Sci. USA, 98, 5116-5121.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
44
-
-
25444475785
-
A standard curve based method for relative real time PCR data processing
-
Larionov,A., Krause,A. and Miller,W. (2005) A standard curve based method for relative real time PCR data processing. BMC Bioinformatics 6, 62.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 62
-
-
Larionov, A.1
Krause, A.2
Miller, W.3
-
45
-
-
11144358198
-
A gene atlas of the mouse and human protein-encoding transcriptomes
-
Su,A.I., Wiltshire,T., Batalov,S., Lapp,H., Ching,K.A., Block,D., Zhang,J., Soden,R., Hayakawa,M., Kreiman,G. et al. (2004) A gene atlas of the mouse and human protein-encoding transcriptomes. Proc. Natl Acad. Sci., 101, 6062-6067.
-
(2004)
Proc. Natl Acad. Sci
, vol.101
, pp. 6062-6067
-
-
Su, A.I.1
Wiltshire, T.2
Batalov, S.3
Lapp, H.4
Ching, K.A.5
Block, D.6
Zhang, J.7
Soden, R.8
Hayakawa, M.9
Kreiman, G.10
-
46
-
-
15244358503
-
Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
-
Xie,X., Lu,J., Kulbokas,E.J., Golub,T.R., Mootha,V., Lindblad-Toh,K., Lander,E.S. and Kellis,M. (2005) Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals. Nature, 434, 338-345.
-
(2005)
Nature
, vol.434
, pp. 338-345
-
-
Xie, X.1
Lu, J.2
Kulbokas, E.J.3
Golub, T.R.4
Mootha, V.5
Lindblad-Toh, K.6
Lander, E.S.7
Kellis, M.8
-
48
-
-
20444365683
-
GOToolBox: Functional analysis of gene datasets based on Gene Ontology
-
Martin,D., Brun,C., Remy,E., Mouren,P., Thieffry,D. and Jacq,B. (2004) GOToolBox: Functional analysis of gene datasets based on Gene Ontology. Genome Biol., 5, R101.
-
(2004)
Genome Biol
, vol.5
-
-
Martin, D.1
Brun, C.2
Remy, E.3
Mouren, P.4
Thieffry, D.5
Jacq, B.6
-
49
-
-
0036714635
-
Distinct domains in the CArG-box binding factor A destabilize tetraplex forms of the fragile X expanded sequence d(CGG)n
-
Weisman-Shomer,P., Cohen,E. and Fry,M. (2002) Distinct domains in the CArG-box binding factor A destabilize tetraplex forms of the fragile X expanded sequence d(CGG)n. Nucleic Acids Res., 30, 3672-3681.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3672-3681
-
-
Weisman-Shomer, P.1
Cohen, E.2
Fry, M.3
-
50
-
-
33846786859
-
Enrichment of G4 DNA motif in transcriptional regulatory region of chicken genome
-
Du,Z., Kong,P., Gao,Y. and Li,N. (2007) Enrichment of G4 DNA motif in transcriptional regulatory region of chicken genome. Biochem. Biophys. Res. Commun., 354, 1067-1070.
-
(2007)
Biochem. Biophys. Res. Commun
, vol.354
, pp. 1067-1070
-
-
Du, Z.1
Kong, P.2
Gao, Y.3
Li, N.4
-
51
-
-
34247645020
-
Extensive selection for the enrichment of G4 DNA motifs in transcriptional regulatory regions of warm blooded animals
-
Zhao,Y., Du,Z. and Li,N. (2007) Extensive selection for the enrichment of G4 DNA motifs in transcriptional regulatory regions of warm blooded animals. FEBS Lett., 581, 1951-1956.
-
(2007)
FEBS Lett
, vol.581
, pp. 1951-1956
-
-
Zhao, Y.1
Du, Z.2
Li, N.3
-
52
-
-
0036597090
-
The cationic porphyrin TMPyP4 down-regulates c-MYC and human telomerase reverse transcriptase expression and inhibits tumor growth in vivo
-
Grand,C.L., Han,H., Munoz,R.M., Weitman,S., Von Hoff,D.D., Hurley,L.H. and Bearss,D.J. (2002) The cationic porphyrin TMPyP4 down-regulates c-MYC and human telomerase reverse transcriptase expression and inhibits tumor growth in vivo. Mol. Cancer Ther., 1, 565-573.
-
(2002)
Mol. Cancer Ther
, vol.1
, pp. 565-573
-
-
Grand, C.L.1
Han, H.2
Munoz, R.M.3
Weitman, S.4
Von Hoff, D.D.5
Hurley, L.H.6
Bearss, D.J.7
-
53
-
-
35148882644
-
Interaction between human telomere and a carbazole derivative: A molecular dynamics simulation of a quadruplex stabilizer and telomerase inhibitor
-
Yang,D.Y., Chang,T.C. and Sheu,S.Y. (2008) Interaction between human telomere and a carbazole derivative: A molecular dynamics simulation of a quadruplex stabilizer and telomerase inhibitor. J. Phys. Chem. A 111, 9224-9232.
-
(2008)
J. Phys. Chem. A
, vol.111
, pp. 9224-9232
-
-
Yang, D.Y.1
Chang, T.C.2
Sheu, S.Y.3
-
54
-
-
0033594341
-
Interactions of TMPyP4 and TMPyP2 with quadruplex DNA. Structural basis for the differential effects on telomerase inhibition
-
Han,F.X., Wheelhouse,R.T. and Hurley,L.H. (1999) Interactions of TMPyP4 and TMPyP2 with quadruplex DNA. Structural basis for the differential effects on telomerase inhibition. J. Am. Chem. Soc., 121, 3561-3570.
-
(1999)
J. Am. Chem. Soc
, vol.121
, pp. 3561-3570
-
-
Han, F.X.1
Wheelhouse, R.T.2
Hurley, L.H.3
-
55
-
-
0035913742
-
Selective Interactions of Cationic Porphyrins with G-Quadruplex Structures
-
Han,H., Langley,D.R., Rangan,A. and Hurley,L.H. (2001) Selective Interactions of Cationic Porphyrins with G-Quadruplex Structures. J. Am. Chem. Soc., 123, 8902-8913.
-
(2001)
J. Am. Chem. Soc
, vol.123
, pp. 8902-8913
-
-
Han, H.1
Langley, D.R.2
Rangan, A.3
Hurley, L.H.4
-
56
-
-
39049170386
-
Genome-wide analysis reveals regulatory role of G4 DNA in gene transcription
-
Du,Z., Zhao,Y. and Li,N. (2008) Genome-wide analysis reveals regulatory role of G4 DNA in gene transcription. Genome Res., 18, 233-241.
-
(2008)
Genome Res
, vol.18
, pp. 233-241
-
-
Du, Z.1
Zhao, Y.2
Li, N.3
-
57
-
-
37349056426
-
Quadruplex-coupled kinetics distinguishes ligand binding between G4 DNA motifs
-
Halder,K. and Chowdhury,S. (2007) Quadruplex-coupled kinetics distinguishes ligand binding between G4 DNA motifs. Biochemistry, 46, 14762-14770.
-
(2007)
Biochemistry
, vol.46
, pp. 14762-14770
-
-
Halder, K.1
Chowdhury, S.2
-
58
-
-
23344442222
-
Kinetic resolution of bimolecular hybridization versus intramolecular folding in nucleic acids by surface plasmon resonance: Application to G-quadruplex/duplex competition in human c-myc promoter
-
Halder,K. and Chowdhury,S. (2005) Kinetic resolution of bimolecular hybridization versus intramolecular folding in nucleic acids by surface plasmon resonance: Application to G-quadruplex/duplex competition in human c-myc promoter. Nucleic Acids Res., 33, 4466-4474.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 4466-4474
-
-
Halder, K.1
Chowdhury, S.2
-
59
-
-
34347273762
-
Tetraplex DNA and its interacting proteins
-
Fry,M. (2007) Tetraplex DNA and its interacting proteins. Front Biosci., 12, 4336-4351.
-
(2007)
Front Biosci
, vol.12
, pp. 4336-4351
-
-
Fry, M.1
-
60
-
-
0036953237
-
DNA topology-mediated control of global gene expression in Escherichia coli
-
Hatfield,G.W. and Benham,C.J. (2002) DNA topology-mediated control of global gene expression in Escherichia coli. Annu. Rev. Genet., 36, 175-203.
-
(2002)
Annu. Rev. Genet
, vol.36
, pp. 175-203
-
-
Hatfield, G.W.1
Benham, C.J.2
-
61
-
-
38849132828
-
The functional response of upstream DNA to dynamic supercoiling in vivo
-
Kouzine,F., Sanford,S., Elisha-Feil,Z. and Levens,D. (2008) The functional response of upstream DNA to dynamic supercoiling in vivo. Nat. Struct. Mol. Biol., 15, 146-154.
-
(2008)
Nat. Struct. Mol. Biol
, vol.15
, pp. 146-154
-
-
Kouzine, F.1
Sanford, S.2
Elisha-Feil, Z.3
Levens, D.4
-
62
-
-
0033529536
-
Cleavage of DNA by human NM23-H2/nucleoside diphosphate kinase involves formation of a covalent protein-DNA complex
-
Postel,E.H. (1999) Cleavage of DNA by human NM23-H2/nucleoside diphosphate kinase involves formation of a covalent protein-DNA complex. J. Biol. Chem., 274, 22821-22829.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 22821-22829
-
-
Postel, E.H.1
-
63
-
-
58549096734
-
Metastases suppressor NM23-H2 interaction with G-quadruplex DNA within c-MYC promoter nuclease hypersensitive element induces c-MYC expression
-
Thakur,R.K., Kumar,P., Halder,K., Verma,A., Kar,A., Parent,J.L., Basundra,R., Kumar,A. and Chowdhury,S. (2009) Metastases suppressor NM23-H2 interaction with G-quadruplex DNA within c-MYC promoter nuclease hypersensitive element induces c-MYC expression. Nucleic Acids Res. 37, 172-183
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 172-183
-
-
Thakur, R.K.1
Kumar, P.2
Halder, K.3
Verma, A.4
Kar, A.5
Parent, J.L.6
Basundra, R.7
Kumar, A.8
Chowdhury, S.9
-
64
-
-
42249101229
-
The proximal promoter region of the human vascular endothelial growth factor gene has a G-quadruplex structure that can be targeted by G-quadruplex-interactive agents
-
Sun,D., Liu,W.J., Guo,K., Rusche,J.J., Ebbinghaus,S., Gokhale,V. and Hurley,L.H. (2008) The proximal promoter region of the human vascular endothelial growth factor gene has a G-quadruplex structure that can be targeted by G-quadruplex-interactive agents. Mol. Cancer Ther., 7, 880-889.
-
(2008)
Mol. Cancer Ther
, vol.7
, pp. 880-889
-
-
Sun, D.1
Liu, W.J.2
Guo, K.3
Rusche, J.J.4
Ebbinghaus, S.5
Gokhale, V.6
Hurley, L.H.7
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