Translational halt during elongation caused by G-quadruplex formed by mRNA

Methods

Volumn 64, Issue 1, 2013, Pages 73-78

  Endoh, Tamaki ^a   Kawasaki, Yu ^a   Sugimoto, Naoki ^a  

^a KONAN UNIVERSITY   (Japan)

Author keywords

G quadruplex; Kinetic analysis; MRNA structure; Synchronized translation; Translation elongation

Indexed keywords

ESTROGEN RECEPTOR ALPHA; GUANINE QUADRUPLEX; ISOLEUCINE TRANSFER RNA LIGASE; MESSENGER RNA; TRANSFER RNA; TYROSINE TRANSFER RNA LIGASE;

AMINO ACID SEQUENCE; ARTICLE; CODON; CONFORMATIONAL TRANSITION; DNA STRUCTURE; GENE EXPRESSION; HYDROGEN BOND; MOLECULAR CROWDING; OPEN READING FRAME; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN SYNTHESIS; REACTION TIME; THERMODYNAMICS; TRANSCRIPTION ELONGATION; TRANSLATION INITIATION;

G-QUADRUPLEX; KINETIC ANALYSIS; MRNA STRUCTURE; SYNCHRONIZED TRANSLATION; TRANSLATION ELONGATION;

G-QUADRUPLEXES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PEPTIDE CHAIN ELONGATION, TRANSLATIONAL; PROTEIN BIOSYNTHESIS; RNA, MESSENGER; TIME FACTORS;

EID: 84886315257     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2013.05.026     Document Type: Article

References (32)

1. Stoneley M., Willis A.E. Oncogene 2004, 23:3200-3207.
2. Serganov A., Patel D.J. Curr. Opin. Struct. Biol. 2012, 22:279-286.
3. Barrick J.E., Breaker R.R. Genome Biol. 2007, 8:R239.
4. Kozak M. Proc. Natl. Acad. Sci. USA 1986, 83:2850-2854.
5. Kozak M. Mol. Cell. Biol. 1989, 9:5134-5142.
6. Kudla G., Murray A.W., Tollervey D., Plotkin J.B. Science 2009, 324:255-258.
7. Giedroc D.P., Cornish P.V. Virus Res. 2009, 139:193-208.
8. Doma M.K., Parker R. Nature 2006, 440:561-564.
9. Harigaya Y., Parker R. RNA 2010, 1:132-141.
10. Komar A.A. Trends Biochem. Sci. 2009, 34:16-24.
11. Zhang G., Hubalewska M., Ignatova Z. Nat. Struct. Mol. Biol. 2009, 16:274-280.
12. O'Brien E.P., Vendruscolo M., Dobson C.M. Nat. Commun. 2012, 3:868.
13. Laursen B.S., Sorensen H.P., Mortensen K.K., Sperling-Petersen H.U. Microbiol. Mol. Biol. Rev. 2005, 69:101-123.
14. Takahashi S., Iida M., Furusawa H., Shimizu Y., Ueda T., Okahata Y. J. Am. Chem. Soc. 2009, 131:9326-9332.
15. Endoh T., Kawasaki Y., Sugimoto N. Anal. Chem. 2012, 84:857-861.
16. Williamson J.R. Annu. Rev. Biophys. Biomol. Struct. 1994, 23:703-730.
17. Collie G.W., Parkinson G.N. Chem. Soc. Rev. 2011, 40:5867-5892.
18. Millevoi S., Moine H., Vagner S. RNA 2012, 3:495-507.
19. Gomez D., Guedin A., Mergny J.L., Salles B., Riou J.F., Teulade-Fichou M.P., Calsou P. Nucleic Acids Res. 2010, 38:7187-7198.
20. Marcel V., Tran P.L., Sagne C., Martel-Planche G., Vaslin L., Teulade-Fichou M.P., Hall J., Mergny J.L., Hainaut P., Van Dyck E. Carcinogenesis 2010, 32:271-278.
21. Wanrooij P.H., Uhler J.P., Simonsson T., Falkenberg M., Gustafsson C.M. Proc. Natl. Acad. Sci. USA 2010, 107:16072-16077.
22. Bugaut A., Balasubramanian S. Nucleic Acids Res. 2012, 40:4727-4741.
23. Noren C.J., Anthony-Cahill S.J., Griffith M.C., Schultz P.G. Science 1989, 244:182-188.
24. Shimizu Y., Inoue A., Tomari Y., Suzuki T., Yokogawa T., Nishikawa K., Ueda T. Nat. Biotechnol. 2001, 19:751-755.
25. Shimizu Y., Kanamori T., Ueda T. Methods 2005, 36:299-304.
26. Miyoshi D., Karimata H., Sugimoto N. J. Am. Chem. Soc. 2006, 128:7957-7963.
27. Pramanik S., Nagatoishi S., Sugimoto N. Chem. Commun. 2012, 48:4815-4817.
28. Miyoshi D., Fujimoto T., Sugimoto N. Top. Curr. Chem. 2012, 330:87-110.
29. Endoh T., Kawasaki Y., Sugimoto N. Angew. Chem. Int. Ed. 2013, 52:5522-5526.
30. T. Endoh, Y. Kawasaki, N. Sugimoto, Nucleic Acids Res. First published online April 24, 2013, doi:10.1093/nar/gkt286.
31. Jenner L.B., Demeshkina N., Yusupova G., Yusupov M. Nat. Struct. Mol. Biol. 2010, 17:555-560.
32. Jenner L., Romby P., Rees B., Schulze-Briese C., Springer M., Ehresmann C., Ehresmann B., Moras D., Yusupova G., Yusupov M. Science 2005, 308:120-123.