메뉴 건너뛰기




Volumn 9, Issue 10, 2014, Pages 2432-2440

Computational studies support the role of the C7-sibirosamine sugar of the pyrrolobenzodiazepine (PBD) sibiromycin in transcription factor inhibition

Author keywords

[No Author keywords available]

Indexed keywords

C7 SIBIROSAMINE; DOUBLE STRANDED DNA; HYDROXYL GROUP; MONOMER; PYRROLO[2,1 C][1,4]BENZODIAZEPINE DERIVATIVE; SIBIROMYCIN; SUGAR; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR GAL4; UNCLASSIFIED DRUG; AMINOGLYCOSIDE; BENZODIAZEPINE DERIVATIVE; DNA; DNA BINDING PROTEIN; GAL4 PROTEIN, S CEREVISIAE; PYRROLE DERIVATIVE; PYRROLO(2,1-C)(1,4)BENZODIAZEPINE; SACCHAROMYCES CEREVISIAE PROTEIN;

EID: 84908120619     PISSN: 15548929     EISSN: 15548937     Source Type: Journal    
DOI: 10.1021/cb5002203     Document Type: Article
Times cited : (11)

References (66)
  • 2
    • 84900857746 scopus 로고    scopus 로고
    • Correction to mutasynthesis of a potent anticancer sibiromycin analogue
    • Yonemoto, I. T., Li, W., Khullar, A., Reixach, N., and Gerratana, B. (2014) Correction to mutasynthesis of a potent anticancer sibiromycin analogue. ACS Chem. Biol. 9, 1214-1214.
    • (2014) ACS Chem. Biol. , vol.9 , pp. 1214-1214
    • Yonemoto, I.T.1    Li, W.2    Khullar, A.3    Reixach, N.4    Gerratana, B.5
  • 3
    • 79954467838 scopus 로고    scopus 로고
    • Synthesis of DNAinteractive pyrrolo[2,1-c][1,4]benzodiazepines (PBDs)
    • Antonow, D., and Thurston, D. E. (2011) Synthesis of DNAinteractive pyrrolo[2,1-c][1,4]benzodiazepines (PBDs). Chem. Rev. 111, 2815-2864.
    • (2011) Chem. Rev. , vol.111 , pp. 2815-2864
    • Antonow, D.1    Thurston, D.E.2
  • 4
    • 61749097371 scopus 로고    scopus 로고
    • Pyrrolo[2,1-c][1,4]benzodiazepine as a scaffold for the design and synthesis of anti-tumour drugs
    • Cipolla, L., Araujo, A. C., Airoldi, C., and Bini, D. (2009) Pyrrolo[2,1-c][1,4]benzodiazepine as a scaffold for the design and synthesis of anti-tumour drugs. Anticancer Agents Med. Chem. 9, 1-31.
    • (2009) Anticancer Agents Med. Chem. , vol.9 , pp. 1-31
    • Cipolla, L.1    Araujo, A.C.2    Airoldi, C.3    Bini, D.4
  • 5
    • 84857665235 scopus 로고    scopus 로고
    • Biosynthesis, synthesis, and biological activities of pyrrolobenzodiazepines
    • Gerratana, B. (2012) Biosynthesis, synthesis, and biological activities of pyrrolobenzodiazepines. Med. Res. Rev. 32, 254-293.
    • (2012) Med. Res. Rev. , vol.32 , pp. 254-293
    • Gerratana, B.1
  • 6
    • 79955867207 scopus 로고    scopus 로고
    • The development of pyrrolobenzodiazepines as antitumour agents
    • Hartley, J. A. (2011) The development of pyrrolobenzodiazepines as antitumour agents. Expert Opin. Invest. Drugs 20, 733-744.
    • (2011) Expert Opin. Invest. Drugs , vol.20 , pp. 733-744
    • Hartley, J.A.1
  • 7
    • 33644926142 scopus 로고    scopus 로고
    • Recent advances in the solid-phase combinatorial synthetic strategies for the benzodiazepine based privileged structures
    • Kamal, A., Reddy, K. L., Devaiah, V., Shankaraiah, N., and Reddy, D. R. (2006) Recent advances in the solid-phase combinatorial synthetic strategies for the benzodiazepine based privileged structures. Mini-Rev. Med. Chem. 6, 53-69.
    • (2006) Mini-Rev. Med. Chem. , vol.6 , pp. 53-69
    • Kamal, A.1    Reddy, K.L.2    Devaiah, V.3    Shankaraiah, N.4    Reddy, D.R.5
  • 8
    • 0013852032 scopus 로고
    • Isolation and characterization of anthramycin, a new antitumor antibiotic
    • Leimgruber, W., Stefanovic, V., Schenker, F., Karr, A., and Berger, J. (1965) Isolation and characterization of anthramycin, a new antitumor antibiotic. J. Am. Chem. Soc. 87, 5791-5793.
    • (1965) J. Am. Chem. Soc. , vol.87 , pp. 5791-5793
    • Leimgruber, W.1    Stefanovic, V.2    Schenker, F.3    Karr, A.4    Berger, J.5
  • 9
    • 0023755904 scopus 로고
    • Pyrrolo[1,4]benzodiazepine antitumor antibiotics: Relationship of DNA alkylation and sequence specificity to the biological activity of natural and synthetic compounds
    • Hurley, L. H., Reck, T., Thurston, D. E., Langley, D. R., Holden, K. G., Hertzberg, R. P., Hoover, J. R., Gallagher, G., Jr., Faucette, L. F., Mong, S. M., et al. (1988) Pyrrolo[1,4]benzodiazepine antitumor antibiotics: Relationship of DNA alkylation and sequence specificity to the biological activity of natural and synthetic compounds. Chem. Res. Toxicol. 1, 258-268.
    • (1988) Chem. Res. Toxicol. , vol.1 , pp. 258-268
    • Hurley, L.H.1    Reck, T.2    Thurston, D.E.3    Langley, D.R.4    Holden, K.G.5    Hertzberg, R.P.6    Hoover, J.R.7    Gallagher, G.8    Faucette, L.F.9    Mong, S.M.10
  • 15
    • 0027178818 scopus 로고
    • A quantitative assay to measure the relative DNA-binding affinity of pyrrolo[2,1-c][1,4]benzodiazepine (PBD) antitumour antibiotics based on the inhibition of restriction endonuclease BamHI
    • Puvvada, M. S., Hartley, J. A., Jenkins, T. C., and Thurston, D. E. (1993) A quantitative assay to measure the relative DNA-binding affinity of pyrrolo[2,1-c][1,4]benzodiazepine (PBD) antitumour antibiotics based on the inhibition of restriction endonuclease BamHI. Nucleic Acids Res. 21, 3671-3675.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 3671-3675
    • Puvvada, M.S.1    Hartley, J.A.2    Jenkins, T.C.3    Thurston, D.E.4
  • 16
    • 20844442267 scopus 로고    scopus 로고
    • The XPFERCC1 endonuclease and homologous recombination contribute to the repair of minor groove DNA interstrand crosslinks in mammalian cells produced by the pyrrolo[2,1-c][1,4]benzodiazepine dimer SJG-136
    • Clingen, P. H., De Silva, I. U., McHugh, P. J., Ghadessy, F. J., Tilby, M. J., Thurston, D. E., and Hartley, J. A. (2005) The XPFERCC1 endonuclease and homologous recombination contribute to the repair of minor groove DNA interstrand crosslinks in mammalian cells produced by the pyrrolo[2,1-c][1,4]benzodiazepine dimer SJG-136. Nucleic Acids Res. 33, 3283-3291.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 3283-3291
    • Clingen, P.H.1    De Silva, I.U.2    McHugh, P.J.3    Ghadessy, F.J.4    Tilby, M.J.5    Thurston, D.E.6    Hartley, J.A.7
  • 17
    • 0031017942 scopus 로고    scopus 로고
    • Inhibition of bacteriophage T7 RNA polymerase in vitro transcription by DNABinding pyrrolo[2,1-c][1,4]benzodiazepines
    • Puvvada, M. S., Forrow, S. A., Hartley, J. A., Stephenson, P., Gibson, I., Jenkins, T. C., and Thurston, D. E. (1997) Inhibition of bacteriophage T7 RNA polymerase in vitro transcription by DNABinding pyrrolo[2,1-c][1,4]benzodiazepines. Biochemistry 36, 2478-2484.
    • (1997) Biochemistry , vol.36 , pp. 2478-2484
    • Puvvada, M.S.1    Forrow, S.A.2    Hartley, J.A.3    Stephenson, P.4    Gibson, I.5    Jenkins, T.C.6    Thurston, D.E.7
  • 18
    • 0022552540 scopus 로고
    • DNA sequence specificity of the pyrrolo[1,4]benzodiazepine antitumor antibiotics. Methidiumpropyl-EDTA-iron(II) footprinting analysis of DNA binding sites for anthramycin and related drugs
    • Hertzberg, R. P., Hecht, S. M., Reynolds, V. L., Molineux, I. J., and Hurley, L. H. (1986) DNA sequence specificity of the pyrrolo[1,4]benzodiazepine antitumor antibiotics. Methidiumpropyl-EDTA-iron(II) footprinting analysis of DNA binding sites for anthramycin and related drugs. Biochemistry 25, 1249-1258.
    • (1986) Biochemistry , vol.25 , pp. 1249-1258
    • Hertzberg, R.P.1    Hecht, S.M.2    Reynolds, V.L.3    Molineux, I.J.4    Hurley, L.H.5
  • 19
    • 0022458567 scopus 로고
    • Pyrrolo[1,4]benzodiazepine antitumor antibiotics: Evidence for two forms of tomaymycin bound to DNA
    • Barkley, M. D., Cheatham, S., Thurston, D. E., and Hurley, L. H. (1986) Pyrrolo[1,4]benzodiazepine antitumor antibiotics: Evidence for two forms of tomaymycin bound to DNA. Biochemistry 25, 3021-3031.
    • (1986) Biochemistry , vol.25 , pp. 3021-3031
    • Barkley, M.D.1    Cheatham, S.2    Thurston, D.E.3    Hurley, L.H.4
  • 20
    • 84864974255 scopus 로고    scopus 로고
    • Interand intrastrand DNA crosslinks by 2-fluoro-substituted pyrrolobenzodiazepine dimers: Stability, stereochemistry and drug orientation
    • Seifert, J., Pezeshki, S., Kamal, A., and Weisz, K. (2012) Interand intrastrand DNA crosslinks by 2-fluoro-substituted pyrrolobenzodiazepine dimers: Stability, stereochemistry and drug orientation. Org. Biomol Chem. 10, 6850-6860.
    • (2012) Org. Biomol Chem. , vol.10 , pp. 6850-6860
    • Seifert, J.1    Pezeshki, S.2    Kamal, A.3    Weisz, K.4
  • 21
    • 0037489428 scopus 로고    scopus 로고
    • Sequence-selective recognition of duplex DNA Through covalent interstrand crosslinking: Kinetic and molecular modeling studies with pyrrolobenzodiazepine dimers
    • Smellie, M., Bose, D. S., Thompson, A. S., Jenkins, T. C., Hartley, J. A., and Thurston, D. E. (2003) Sequence-selective recognition of duplex DNA Through covalent interstrand crosslinking: Kinetic and molecular modeling studies with pyrrolobenzodiazepine dimers. Biochemistry 42, 8232-8239.
    • (2003) Biochemistry , vol.42 , pp. 8232-8239
    • Smellie, M.1    Bose, D.S.2    Thompson, A.S.3    Jenkins, T.C.4    Hartley, J.A.5    Thurston, D.E.6
  • 22
    • 0028131645 scopus 로고
    • Crystal structure of a covalent DNA-drug adduct: Anthramycin bound to C-C-A-A-C-G-T-T-G-G and a molecular explanation of specificity
    • Kopka, M. L., Goodsell, D. S., Baikalov, I., Grzeskowiak, K., Cascio, D., and Dickerson, R. E. (1994) Crystal structure of a covalent DNA-drug adduct: Anthramycin bound to C-C-A-A-C-G-T-T-G-G and a molecular explanation of specificity. Biochemistry 33, 13593-13610.
    • (1994) Biochemistry , vol.33 , pp. 13593-13610
    • Kopka, M.L.1    Goodsell, D.S.2    Baikalov, I.3    Grzeskowiak, K.4    Cascio, D.5    Dickerson, R.E.6
  • 24
    • 78649248302 scopus 로고    scopus 로고
    • DNA sequence preference and adduct orientation of pyrrolo[2,1-c][1,4]benzodiazepine antitumor agents
    • Rahman, K. M., Vassoler, H., James, C. H., and Thurston, D. E. (2010) DNA sequence preference and adduct orientation of pyrrolo[2,1-c][1,4]benzodiazepine antitumor agents. ACS Med. Chem. Lett. 1, 427-432.
    • (2010) ACS Med. Chem. Lett. , vol.1 , pp. 427-432
    • Rahman, K.M.1    Vassoler, H.2    James, C.H.3    Thurston, D.E.4
  • 26
    • 13844314800 scopus 로고    scopus 로고
    • Synthesis and biological activity of fluoroquinolone-pyrrolo[2,1-c][1,4]benzodiazepine conjugates
    • Kamal, A., Devaiah, V., Reddy, K. L., and Kumar, M. S. (2005) Synthesis and biological activity of fluoroquinolone-pyrrolo[2,1-c][1,4]benzodiazepine conjugates. Bioorg. Med. Chem. 13, 2021-2029.
    • (2005) Bioorg. Med. Chem. , vol.13 , pp. 2021-2029
    • Kamal, A.1    Devaiah, V.2    Reddy, K.L.3    Kumar, M.S.4
  • 27
    • 49149087266 scopus 로고    scopus 로고
    • Synthesis, DNAbinding ability and evaluation of antitumour activity of triazolo[1,2,4] benzothiadiazine linked pyrrolo[2,1- c][1,4] benzodiazepine conjugates
    • Kamal, A., Khan, M. N. A., Srikanth, Y. V. V, Reddy, K. S., Juvekar, A., Sen, S., Kurian, N., and Zingde, S. (2008) Synthesis, DNAbinding ability and evaluation of antitumour activity of triazolo[1,2,4] benzothiadiazine linked pyrrolo[2,1- c][1,4] benzodiazepine conjugates. Bioorg. Med. Chem. 16, 7804-7810.
    • (2008) Bioorg. Med. Chem. , vol.16 , pp. 7804-7810
    • Kamal, A.1    Khan, M.N.A.2    Srikanth, Y.V.V.3    Reddy, K.S.4    Juvekar, A.5    Sen, S.6    Kurian, N.7    Zingde, S.8
  • 30
    • 0023691730 scopus 로고
    • Synthesis and DNA crosslinking ability of a dimeric anthramycin analog
    • Farmer, J. D., Rudnicki, S. M., and Suggs, J. W. (1988) Synthesis and DNA crosslinking ability of a dimeric anthramycin analog. Tetrahedron Lett. 29, 5105-5108.
    • (1988) Tetrahedron Lett. , vol.29 , pp. 5105-5108
    • Farmer, J.D.1    Rudnicki, S.M.2    Suggs, J.W.3
  • 31
    • 0035282633 scopus 로고    scopus 로고
    • Design, synthesis, and evaluation of a novel pyrrolobenzodiazepine DNA-interactive agent with highly efficient cross-linking ability and potent cytotoxicity
    • Gregson, S. J., Howard, P. W., Hartley, J. A., Brooks, N. A., Adams, L. J., Jenkins, T. C., Kelland, L. R., and Thurston, D. E. (2001) Design, synthesis, and evaluation of a novel pyrrolobenzodiazepine DNA-interactive agent with highly efficient cross-linking ability and potent cytotoxicity. J. Med. Chem. 44, 737-748.
    • (2001) J. Med. Chem. , vol.44 , pp. 737-748
    • Gregson, S.J.1    Howard, P.W.2    Hartley, J.A.3    Brooks, N.A.4    Adams, L.J.5    Jenkins, T.C.6    Kelland, L.R.7    Thurston, D.E.8
  • 33
    • 60049086079 scopus 로고    scopus 로고
    • Remarkable enhancement in the DNA-binding ability of C2-fluoro substituted pyrrolo[2,1-c][1,4]benzodiazepines and their anticancer potential
    • Kamal, A., Rajender, Reddy, D. R., Reddy, M. K., Balakishan, G., Shaik, T. B., Chourasia, M., and Sastry, G. N. (2009) Remarkable enhancement in the DNA-binding ability of C2-fluoro substituted pyrrolo[2,1-c][1,4]benzodiazepines and their anticancer potential. Bioorg. Med. Chem. 17, 1557-1572.
    • (2009) Bioorg. Med. Chem. , vol.17 , pp. 1557-1572
    • Kamal, A.1    Rajender2    Reddy, D.R.3    Reddy, M.K.4    Balakishan, G.5    Shaik, T.B.6    Chourasia, M.7    Sastry, G.N.8
  • 34
    • 0002070325 scopus 로고
    • Advances in the study of pyrrolo[2,1- c][1,4]benzodiazepine (PBD) antitumour antibiotics
    • (Neidle, S., and Waring, M. J., Eds.) The Macmillan Press Ltd., London, U.K.
    • Thurston, D. E. (1993) Advances in the study of pyrrolo[2,1- c][1,4]benzodiazepine (PBD) antitumour antibiotics. In Molecular Aspects of Anticancer Drug-DNA Interactions (Neidle, S., and Waring, M. J., Eds.) pp 54-88, The Macmillan Press Ltd., London, U.K.
    • (1993) Molecular Aspects of Anticancer Drug-DNA Interactions , pp. 54-88
    • Thurston, D.E.1
  • 35
    • 0028600121 scopus 로고
    • Structure of a covalent DNA minor-groove adduct with a pyrrolobenzodiazepine dimer?Evidence for sequence-specific interstrand cross-linking
    • Jenkins, T. C., Hurley, L. H., Neidle, S., and Thurston, D. E. (1994) Structure of a covalent DNA minor-groove adduct with a pyrrolobenzodiazepine dimer?Evidence for sequence-specific interstrand cross-linking. J. Med. Chem. 37, 4529-4537.
    • (1994) J. Med. Chem. , vol.37 , pp. 4529-4537
    • Jenkins, T.C.1    Hurley, L.H.2    Neidle, S.3    Thurston, D.E.4
  • 36
    • 79958123966 scopus 로고    scopus 로고
    • Nuclear magnetic resonance solution structures of inter- and intrastrand adducts of DNA cross-linker SJG-136
    • Hopton, S. R., and Thompson, A. S. (2011) Nuclear magnetic resonance solution structures of inter- and intrastrand adducts of DNA cross-linker SJG-136. Biochemistry 50, 4720-4732.
    • (2011) Biochemistry , vol.50 , pp. 4720-4732
    • Hopton, S.R.1    Thompson, A.S.2
  • 39
    • 0018923169 scopus 로고
    • Protection against anthramycin-induced toxicity in mice by coenzyme Q10
    • Lubawy, W. C., Dallam, R. A., and Hurley, L. H. (1980) Protection against anthramycin-induced toxicity in mice by coenzyme Q10. J. Natl. Cancer Inst. 64, 105-109.
    • (1980) J. Natl. Cancer Inst. , vol.64 , pp. 105-109
    • Lubawy, W.C.1    Dallam, R.A.2    Hurley, L.H.3
  • 40
    • 0015103251 scopus 로고
    • Chemosterilization of house flies with anthramycin methyl ether
    • Borkovec, A. B., Chang, S. C., and Horwitz, S. B. (1971) Chemosterilization of house flies with anthramycin methyl ether. J. Econ. Entomol. 64, 983-984.
    • (1971) J. Econ. Entomol. , vol.64 , pp. 983-984
    • Borkovec, A.B.1    Chang, S.C.2    Horwitz, S.B.3
  • 41
    • 0019394787 scopus 로고
    • Pyrrol[1,4]-benzodiazepine antibiotics. Proposed structures and characteristics of the in vitro deoxyribonucleic acid adducts of anthramycin, tomaymycin, sibiromycin, and neothramycins A and B
    • Petrusek, R. L., Anderson, G. L., Garner, T. F., Fannin, Q. L., Kaplan, D. J., Zimmer, S. G., and Hurley, L. H. (1981) Pyrrol[1,4]-benzodiazepine antibiotics. Proposed structures and characteristics of the in vitro deoxyribonucleic acid adducts of anthramycin, tomaymycin, sibiromycin, and neothramycins A and B. Biochemistry 20, 1111-1119.
    • (1981) Biochemistry , vol.20 , pp. 1111-1119
    • Petrusek, R.L.1    Anderson, G.L.2    Garner, T.F.3    Fannin, Q.L.4    Kaplan, D.J.5    Zimmer, S.G.6    Hurley, L.H.7
  • 42
    • 0021272759 scopus 로고
    • Pyrrolo(1,4)-benzodiazepine antitumor antibiotics?Chemistry, interaction with DNA, and biological implications
    • Hurley, L. H., and Thurston, D. E. (1984) Pyrrolo(1,4)-benzodiazepine antitumor antibiotics?Chemistry, interaction with DNA, and biological implications. Pharm. Res., 52-59.
    • (1984) Pharm. Res. , pp. 52-59
    • Hurley, L.H.1    Thurston, D.E.2
  • 43
    • 0032213634 scopus 로고    scopus 로고
    • Synthesis of novel C7-aryl substituted pyrrolo[2,1-c][1,4]-benzodiazepines (PBDs) via pro-N10-Troc protection and Suzuki coupling
    • Guiotto, A., Howard, P. W., Baraldi, P. G., and Thurston, D. E. (1998) Synthesis of novel C7-aryl substituted pyrrolo[2,1-c][1,4]-benzodiazepines (PBDs) via pro-N10-Troc protection and Suzuki coupling. Bioorg. Med. Chem. Lett. 8, 3017-3018.
    • (1998) Bioorg. Med. Chem. Lett. , vol.8 , pp. 3017-3018
    • Guiotto, A.1    Howard, P.W.2    Baraldi, P.G.3    Thurston, D.E.4
  • 45
    • 0027171122 scopus 로고
    • Correlation of DNA sequence specificity of anthramycin and tomaymycin with reaction kinetics and bending of DNA
    • Kizu, R., Draves, P. H., and Hurley, L. H. (1993) Correlation of DNA sequence specificity of anthramycin and tomaymycin with reaction kinetics and bending of DNA. Biochemistry 32, 8712-8722.
    • (1993) Biochemistry , vol.32 , pp. 8712-8722
    • Kizu, R.1    Draves, P.H.2    Hurley, L.H.3
  • 46
    • 0025237277 scopus 로고
    • Characterization of a unique tomaymycind(CICGAATTCICG)2 adduct containing two drug molecules per duplex by NMR, fluorescence, and molecular modeling studies
    • Boyd, F. L., Stewart, D., Remers, W. A., Barkley, M. D., and Hurley, L. H. (1990) Characterization of a unique tomaymycind(CICGAATTCICG)2 adduct containing two drug molecules per duplex by NMR, fluorescence, and molecular modeling studies. Biochemistry 29, 2387-2403.
    • (1990) Biochemistry , vol.29 , pp. 2387-2403
    • Boyd, F.L.1    Stewart, D.2    Remers, W.A.3    Barkley, M.D.4    Hurley, L.H.5
  • 47
    • 0023819065 scopus 로고
    • One- and two-dimensional 1H NMR, fluorescence, and molecular modeling studies on the tomaymycind(ATGCAT)2 adduct. Evidence for two covalent adducts with opposite orientations and stereochemistries at the covalent linkage site
    • Cheatham, S., Kook, A., Hurley, L. H., Barkley, M. D., and Remers, W. (1988) One- and two-dimensional 1H NMR, fluorescence, and molecular modeling studies on the tomaymycind(ATGCAT)2 adduct. Evidence for two covalent adducts with opposite orientations and stereochemistries at the covalent linkage site. J. Med. Chem. 31, 583-590.
    • (1988) J. Med. Chem. , vol.31 , pp. 583-590
    • Cheatham, S.1    Kook, A.2    Hurley, L.H.3    Barkley, M.D.4    Remers, W.5
  • 48
    • 0032824632 scopus 로고    scopus 로고
    • Molecular modelling of a sequence-specific DNA-binding agent based on the pyrrolo[2,1-c][1,4]benzodiazepines
    • Adams, L. J., Jenkins, T. C., Banting, L., and Thurston, D. E. (1999) Molecular modelling of a sequence-specific DNA-binding agent based on the pyrrolo[2,1-c][1,4]benzodiazepines. Pharm. Pharmacol Commun. 5, 555-560.
    • (1999) Pharm. Pharmacol Commun. , vol.5 , pp. 555-560
    • Adams, L.J.1    Jenkins, T.C.2    Banting, L.3    Thurston, D.E.4
  • 49
    • 0019523349 scopus 로고
    • Chemical conversion of anthramycin 11-methyl ether to didehydroanhydroanthramycin and its utilization in studies of the biosynthesis and mechanism of action of anthramycin
    • Malhotra, R. K., Ostrander, J. M., Hurley, L. H., McInnes, A. G., Smith, D. G., Walter, J. A., and Wright, J. L. (1981) Chemical conversion of anthramycin 11-methyl ether to didehydroanhydroanthramycin and its utilization in studies of the biosynthesis and mechanism of action of anthramycin. J. Nat. Prod. 44, 38-44.
    • (1981) J. Nat. Prod. , vol.44 , pp. 38-44
    • Malhotra, R.K.1    Ostrander, J.M.2    Hurley, L.H.3    McInnes, A.G.4    Smith, D.G.5    Walter, J.A.6    Wright, J.L.7
  • 50
    • 55849116378 scopus 로고    scopus 로고
    • Solution structure of a 2:1 C2-(2-naphthyl) pyrrolo[2,1-c][1,4]benzodiazepine DNA adduct: Molecular basis for unexpectedly high DNA helix stabilization
    • Antonow, D., Barata, T., Jenkins, T. C., Parkinson, G. N., Howard, P. W., Thurston, D. E., and Zloh, M. (2008) Solution structure of a 2:1 C2-(2-naphthyl) pyrrolo[2,1-c][1,4]benzodiazepine DNA adduct: Molecular basis for unexpectedly high DNA helix stabilization. Biochemistry 47, 11818-11829.
    • (2008) Biochemistry , vol.47 , pp. 11818-11829
    • Antonow, D.1    Barata, T.2    Jenkins, T.C.3    Parkinson, G.N.4    Howard, P.W.5    Thurston, D.E.6    Zloh, M.7
  • 51
    • 73649209034 scopus 로고
    • Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature
    • Marmur, J., and Doty, P. (1962) Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J. Mol. Biol. 5, 109-118.
    • (1962) J. Mol. Biol. , vol.5 , pp. 109-118
    • Marmur, J.1    Doty, P.2
  • 52
    • 0017581166 scopus 로고
    • Pyrrolo(1,4)benzodiazepine antitumor antibiotics. In vitro interaction of anthramycin, sibiromycin, and tomaymycin with DNA using specifically radiolabelled molecules
    • Hurley, L. H., Gairola, C., and Zmijewski, M. (1977) Pyrrolo(1,4)benzodiazepine antitumor antibiotics. In vitro interaction of anthramycin, sibiromycin, and tomaymycin with DNA using specifically radiolabelled molecules. Biochim. Biophys. Acta 475, 521-535.
    • (1977) Biochim. Biophys. Acta , vol.475 , pp. 521-535
    • Hurley, L.H.1    Gairola, C.2    Zmijewski, M.3
  • 53
    • 0028600121 scopus 로고
    • Structure of a covalent DNA minor groove adduct with a pyrrolobenzodiazepine dimer: Evidence for sequence-specific interstrand cross-linking
    • Jenkins, T. C., Hurley, L. H., Neidle, S., and Thurston, D. E. (1994) Structure of a covalent DNA minor groove adduct with a pyrrolobenzodiazepine dimer: Evidence for sequence-specific interstrand cross-linking. J. Med. Chem. 37, 4529-4537.
    • (1994) J. Med. Chem. , vol.37 , pp. 4529-4537
    • Jenkins, T.C.1    Hurley, L.H.2    Neidle, S.3    Thurston, D.E.4
  • 58
    • 34250318638 scopus 로고    scopus 로고
    • Refinement of the AMBER force field for nucleic acids: Improving the description of α/γ conformers
    • Perez, A., Marchan, I., Svozil, D., Sponer, J., Cheatham, T. E., 3rd, Laughton, C. A., and Orozco, M. (2007) Refinement of the AMBER force field for nucleic acids: Improving the description of α/γ conformers. Biophys. J. 92, 3817-3829.
    • (2007) Biophys. J. , vol.92 , pp. 3817-3829
    • Perez, A.1    Marchan, I.2    Svozil, D.3    Sponer, J.4    Cheatham, T.E.5    Laughton, C.A.6    Orozco, M.7
  • 59
    • 0022995772 scopus 로고
    • Molecular mechanics simulations on covalent complexes between anthramycin and B DNA
    • Rao, S. N., Singh, U. C., and Kollman, P. A. (1986) Molecular mechanics simulations on covalent complexes between anthramycin and B DNA. J. Med. Chem. 29, 2484-2492.
    • (1986) J. Med. Chem. , vol.29 , pp. 2484-2492
    • Rao, S.N.1    Singh, U.C.2    Kollman, P.A.3
  • 60
    • 33646940952 scopus 로고
    • Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
    • Ryckaert, J.-P., Ciccotti, G., and Berendsen, H. J. C. (1977) Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes. J. Comput. Phys. 23, 327-341.
    • (1977) J. Comput. Phys. , vol.23 , pp. 327-341
    • Ryckaert, J.-P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 61
    • 70450252014 scopus 로고    scopus 로고
    • Evaluation of molecular modelling methods to predict the sequence-selectivity of DNA minor groove binding ligands
    • Wang, H., and Laughton, C. A. (2009) Evaluation of molecular modelling methods to predict the sequence-selectivity of DNA minor groove binding ligands. Phys. Chem. Chem. Phys. 11, 10722-10728.
    • (2009) Phys. Chem. Chem. Phys. , vol.11 , pp. 10722-10728
    • Wang, H.1    Laughton, C.A.2
  • 62
    • 0032937077 scopus 로고    scopus 로고
    • Biomolecular electrostatics with the linearized Poisson-Boltzmann equation
    • Fogolari, F., Zuccato, P., Esposito, G., and Viglino, P. (1999) Biomolecular electrostatics with the linearized Poisson-Boltzmann equation. Biophys. J. 76, 1-16.
    • (1999) Biophys. J. , vol.76 , pp. 1-16
    • Fogolari, F.1    Zuccato, P.2    Esposito, G.3    Viglino, P.4
  • 63
    • 0026547747 scopus 로고
    • DNA recognition by GAL4: Structure of a protein- DNA complex
    • Marmorstein, R., Carey, M., Ptashne, M., and Harrison, S. C. (1992) DNA recognition by GAL4: Structure of a protein- DNA complex. Nature 356, 408-414.
    • (1992) Nature , vol.356 , pp. 408-414
    • Marmorstein, R.1    Carey, M.2    Ptashne, M.3    Harrison, S.C.4
  • 65
    • 0029878720 scopus 로고    scopus 로고
    • VMD: Visual Molecular Dynamics
    • Humphrey, W., Dalke, A., and Schulten, K. (1996) VMD: Visual Molecular Dynamics. J. Mol. Graph 14 (33-38), 27-38.
    • (1996) J. Mol. Graph , vol.14 , Issue.33-38 , pp. 27-38
    • Humphrey, W.1    Dalke, A.2    Schulten, K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.