-
1
-
-
84858308226
-
Natural products as sources of new drugs over the 30 years from 1981 to 2010
-
Newman, D. J., and Cragg, G. M. (2012) Natural products as sources of new drugs over the 30 years from 1981 to 2010. J. Nat. Prod. 75, 311-335.
-
(2012)
J. Nat. Prod.
, vol.75
, pp. 311-335
-
-
Newman, D.J.1
Cragg, G.M.2
-
2
-
-
77955705492
-
Bioactivity-guided navigation of chemical space
-
Bon, R. S., and Waldmann, H. (2010) Bioactivity-guided navigation of chemical space. Acc. Chem. Res. 43, 1103-1114.
-
(2010)
Acc. Chem. Res.
, vol.43
, pp. 1103-1114
-
-
Bon, R.S.1
Waldmann, H.2
-
3
-
-
69249202590
-
The biosynthetic logic of polyketide diversity
-
Hertweck, C. (2009) The biosynthetic logic of polyketide diversity. Angew. Chem., Int. Ed. 48, 4688-4716.
-
(2009)
Angew. Chem., Int. Ed.
, vol.48
, pp. 4688-4716
-
-
Hertweck, C.1
-
4
-
-
0037524493
-
Nonribosomal peptides: From genes to products
-
Schwarzer, D., Finking, R., and Marahiel, M. A. (2003) Nonribosomal peptides: From genes to products. Nat. Prod. Rep. 20, 275-287.
-
(2003)
Nat. Prod. Rep.
, vol.20
, pp. 275-287
-
-
Schwarzer, D.1
Finking, R.2
Marahiel, M.A.3
-
5
-
-
44049083124
-
Protein-protein interactions in multienzyme megasynthetases
-
Weissman, K. J., and Müller, R. (2008) Protein-protein interactions in multienzyme megasynthetases. ChemBioChem 9, 826-848.
-
(2008)
ChemBioChem
, vol.9
, pp. 826-848
-
-
Weissman, K.J.1
Müller, R.2
-
6
-
-
27544456830
-
The impact of bacterial genomics on natural product research
-
Bode, H. B., and Müller, R. (2005) The impact of bacterial genomics on natural product research. Angew. Chem., Int. Ed. 44, 6828-6846.
-
(2005)
Angew. Chem., Int. Ed.
, vol.44
, pp. 6828-6846
-
-
Bode, H.B.1
Müller, R.2
-
7
-
-
78650107130
-
Prokaryotic gene clusters: A rich toolbox for synthetic biology
-
Fischbach, M., and Voigt, C. A. (2010) Prokaryotic gene clusters: a rich toolbox for synthetic biology. Biotechnol. J. 5, 1277-1296.
-
(2010)
Biotechnol. J.
, vol.5
, pp. 1277-1296
-
-
Fischbach, M.1
Voigt, C.A.2
-
8
-
-
30544434619
-
Combinatorial biosynthesis of reduced polyketides
-
Weissman, K. J., and Leadlay, P. F. (2005) Combinatorial biosynthesis of reduced polyketides. Nat. Rev. Microbiol. 3, 925-936.
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 925-936
-
-
Weissman, K.J.1
Leadlay, P.F.2
-
9
-
-
33845709126
-
Molecular engineering approaches to peptide, polyketide and other antibiotics
-
Baltz, R. H. (2006) Molecular engineering approaches to peptide, polyketide and other antibiotics. Nat. Biotechnol. 24, 1533-1540.
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 1533-1540
-
-
Baltz, R.H.1
-
10
-
-
65949116191
-
Myxobacteria-'microbial factories' for the production of bioactive secondary metabolites
-
Wenzel, S. C., and Müller, R. (2009) Myxobacteria-'microbial factories' for the production of bioactive secondary metabolites. Mol. Biosyst. 5, 567-574.
-
(2009)
Mol. Biosyst.
, vol.5
, pp. 567-574
-
-
Wenzel, S.C.1
Müller, R.2
-
11
-
-
77955670903
-
Myxobacterial secondary metabolites: Bioactivities and modes-of-action
-
Weissman, K. J., and Müller, R. (2010) Myxobacterial secondary metabolites: bioactivities and modes-of-action. Nat. Prod. Rep. 27, 1276-1295.
-
(2010)
Nat. Prod. Rep.
, vol.27
, pp. 1276-1295
-
-
Weissman, K.J.1
Müller, R.2
-
12
-
-
80051569814
-
Diversity through semisynthesis: The chemistry and biological activity of semisynthetic epothilone derivatives
-
Altmann, K. H., Gaugaz, F. Z., and Schiess, R. (2011) Diversity through semisynthesis: the chemistry and biological activity of semisynthetic epothilone derivatives. Mol. Diversity 15, 383-399.
-
(2011)
Mol. Diversity
, vol.15
, pp. 383-399
-
-
Altmann, K.H.1
Gaugaz, F.Z.2
Schiess, R.3
-
13
-
-
0034723333
-
Cloning and heterologous expression of the epothilone gene cluster
-
Tang, L., Shah, S., Chung, L., Carney, J., Katz, L., Khosla, C., and Julien, B. (2000) Cloning and heterologous expression of the epothilone gene cluster. Science 287, 640-642.
-
(2000)
Science
, vol.287
, pp. 640-642
-
-
Tang, L.1
Shah, S.2
Chung, L.3
Carney, J.4
Katz, L.5
Khosla, C.6
Julien, B.7
-
14
-
-
54349102474
-
Heterologous production of epothilones B and D in Streptomyces venezuelae
-
Park, S. R., Park, J. W., Jung, W. S., Han, A. R., Ban, Y. H., Kim, E. J., Sohng, J. K., Sim, S. J., and Yoon, Y. J. (2008) Heterologous production of epothilones B and D in Streptomyces venezuelae. Appl. Microbiol. Biotechnol. 81, 109-117.
-
(2008)
Appl. Microbiol. Biotechnol.
, vol.81
, pp. 109-117
-
-
Park, S.R.1
Park, J.W.2
Jung, W.S.3
Han, A.R.4
Ban, Y.H.5
Kim, E.J.6
Sohng, J.K.7
Sim, S.J.8
Yoon, Y.J.9
-
15
-
-
0036716940
-
Heterologous expression of epothilone biosynthetic genes in Myxococcus xanthus
-
Julien, B., and Shah, S. (2002) Heterologous expression of epothilone biosynthetic genes in Myxococcus xanthus. Antimicrob. Agents Chemother. 46, 2772-2778.
-
(2002)
Antimicrob. Agents Chemother.
, vol.46
, pp. 2772-2778
-
-
Julien, B.1
Shah, S.2
-
16
-
-
55249090459
-
Efficient transfer of two large secondary metabolite pathway gene clusters into heterologous hosts by transposition
-
Fu, J., Wenzel, S. C., Perlova, O., Wang, J., Gross, F., Tang, Z., Yin, Y., Stewart, A. F., Müller, R., and Zhang, Y. (2008) Efficient transfer of two large secondary metabolite pathway gene clusters into heterologous hosts by transposition. Nucleic Acids Res. 36, 1-14.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 1-14
-
-
Fu, J.1
Wenzel, S.C.2
Perlova, O.3
Wang, J.4
Gross, F.5
Tang, Z.6
Yin, Y.7
Stewart, A.F.8
Müller, R.9
Zhang, Y.10
-
17
-
-
33845511743
-
Reconstitution of myxothiazol biosynthetic gene cluster by Red/ET recombination and heterologous expression in Myxococcus xanthus
-
Perlova, O., Fu, J., Kuhlmann, S., Krug, D., Stewart, F., Zhang, Y., and Müller, R. (2006) Reconstitution of myxothiazol biosynthetic gene cluster by Red/ET recombination and heterologous expression in Myxococcus xanthus. Appl. Environ. Microbiol. 72, 7485-7494.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 7485-7494
-
-
Perlova, O.1
Fu, J.2
Kuhlmann, S.3
Krug, D.4
Stewart, F.5
Zhang, Y.6
Müller, R.7
-
18
-
-
84858984727
-
Heterologous expression and genetic engineering of the tubulysin biosynthetic gene cluster using Red/ET recombineering and inactivation mutagenesis
-
Chai, Y., Shan, S., Weissman, K. J., Hu, S., Zhang, Y., and Müller, R. (2012) Heterologous expression and genetic engineering of the tubulysin biosynthetic gene cluster using Red/ET recombineering and inactivation mutagenesis. Chem. Biol. 19, 361-371.
-
(2012)
Chem. Biol.
, vol.19
, pp. 361-371
-
-
Chai, Y.1
Shan, S.2
Weissman, K.J.3
Hu, S.4
Zhang, Y.5
Müller, R.6
-
19
-
-
0037023901
-
Optimizing the heterologous production of epothilone D in Myxococcus xanthus
-
Lau, J., Frykman, S., Regentin, R., Ou, S., Tsuruta, H., and Licari, P. (2002) Optimizing the heterologous production of epothilone D in Myxococcus xanthus. Biotechnol. Bioeng. 78, 280-288.
-
(2002)
Biotechnol. Bioeng.
, vol.78
, pp. 280-288
-
-
Lau, J.1
Frykman, S.2
Regentin, R.3
Ou, S.4
Tsuruta, H.5
Licari, P.6
-
20
-
-
8144226497
-
Total synthesis of long DNA sequences: Synthesis of a contiguous 32-kb polyketide synthase gene cluster
-
Kodumal, S. J., Patel, K. G., Reid, R., Menzella, H. G., Welch, M., and Santi, D. V. (2004) Total synthesis of long DNA sequences: Synthesis of a contiguous 32-kb polyketide synthase gene cluster. Proc. Natl. Acad. Sci. U.S.A. 101, 15573-15578.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 15573-15578
-
-
Kodumal, S.J.1
Patel, K.G.2
Reid, R.3
Menzella, H.G.4
Welch, M.5
Santi, D.V.6
-
21
-
-
29944438701
-
Redesign, synthesis and functional expression of the 6-deoxyerythronolide B polyketide synthase gene cluster
-
Menzella, H. G., Reisinger, S. J., Welch, M., Kealey, J. T., Kennedy, J., Reid, R., Tran, C. Q., and Santi, D. V. (2006) Redesign, synthesis and functional expression of the 6-deoxyerythronolide B polyketide synthase gene cluster. J. Ind. Microbiol. Biotechnol. 33, 22-28.
-
(2006)
J. Ind. Microbiol. Biotechnol.
, vol.33
, pp. 22-28
-
-
Menzella, H.G.1
Reisinger, S.J.2
Welch, M.3
Kealey, J.T.4
Kennedy, J.5
Reid, R.6
Tran, C.Q.7
Santi, D.V.8
-
22
-
-
31544449418
-
Heterologous production of epothilone C and D in Escherichia coli
-
Mutka, S. C., Carney, J. R., Liu, Y., and Kennedy, J. (2006) Heterologous production of epothilone C and D in Escherichia coli. Biochemistry 45, 1321-1330.
-
(2006)
Biochemistry
, vol.45
, pp. 1321-1330
-
-
Mutka, S.C.1
Carney, J.R.2
Liu, Y.3
Kennedy, J.4
-
23
-
-
78649323531
-
Engineered polyketide biosynthesis and biocatalysis in Escherichia coli
-
Gao, X., Wang, P., and Tang, Y. (2010) Engineered polyketide biosynthesis and biocatalysis in Escherichia coli. Appl. Microbiol. Biotechnol. 88, 1233-1242.
-
(2010)
Appl. Microbiol. Biotechnol.
, vol.88
, pp. 1233-1242
-
-
Gao, X.1
Wang, P.2
Tang, Y.3
-
24
-
-
0034141305
-
The biosynthetic gene cluster for the microtubule-stabilizing agents epothilones A and B from Sorangium cellulosum So ce90
-
Molnar, I., Schupp, T., Ono, M., Zirkle, R., Milnamow, M., Nowak-Thompson, B., Engel, N., Toupet, C., Stratmann, A., Cyr, D. D., Gorlach, J., Mayo, J. M., Hu, A., Goff, S., Schmid, J., and Ligon, J. M. (2000) The biosynthetic gene cluster for the microtubule-stabilizing agents epothilones A and B from Sorangium cellulosum So ce90. Chem. Biol. 7, 97-109.
-
(2000)
Chem. Biol.
, vol.7
, pp. 97-109
-
-
Molnar, I.1
Schupp, T.2
Ono, M.3
Zirkle, R.4
Milnamow, M.5
Nowak-Thompson, B.6
Engel, N.7
Toupet, C.8
Stratmann, A.9
Cyr, D.D.10
Gorlach, J.11
Mayo, J.M.12
Hu, A.13
Goff, S.14
Schmid, J.15
Ligon, J.M.16
-
25
-
-
0034673927
-
Isolation and characterization of the epothilone biosynthetic gene cluster from Sorangium cellulosum
-
Julien, B., Shah, S., Ziermann, R., Goldman, R., Katz, L., and Khosla, C. (2000) Isolation and characterization of the epothilone biosynthetic gene cluster from Sorangium cellulosum. Gene 249, 153-160.
-
(2000)
Gene
, vol.249
, pp. 153-160
-
-
Julien, B.1
Shah, S.2
Ziermann, R.3
Goldman, R.4
Katz, L.5
Khosla, C.6
-
26
-
-
33748299288
-
Evolution of sensory complexity recorded in a myxobacterial genome
-
Goldman, B. S., Nierman, W. C., Kaiser, D., Slater, S. C., Durkin, A. S., Eisen, J., Ronning, C. M., Barbazuk, W. B., Blanchard, M., Field, C., Halling, C., Hinkle, G., Iartchuk, O., Kim, H. S., Mackenzie, C., Madupu, R., Miller, N., Shvartsbeyn, A., Sullivan, S. A., Vaudin, M., Wiegand, R., and Kaplan, H. B. (2006) Evolution of sensory complexity recorded in a myxobacterial genome. Proc. Natl. Acad. Sci. U.S.A. 103, 15200-15205.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 15200-15205
-
-
Goldman, B.S.1
Nierman, W.C.2
Kaiser, D.3
Slater, S.C.4
Durkin, A.S.5
Eisen, J.6
Ronning, C.M.7
Barbazuk, W.B.8
Blanchard, M.9
Field, C.10
Halling, C.11
Hinkle, G.12
Iartchuk, O.13
Kim, H.S.14
Mackenzie, C.15
Madupu, R.16
Miller, N.17
Shvartsbeyn, A.18
Sullivan, S.A.19
Vaudin, M.20
Wiegand, R.21
Kaplan, H.B.22
more..
-
27
-
-
33746658970
-
Distinguishing features of {delta}-proteobacterial genomes
-
Karlin, S., Brocchieri, L., Mrazek, J., and Kaiser, D. (2006) Distinguishing features of {delta}-proteobacterial genomes. Proc. Natl. Acad. Sci. U.S.A. 103, 11352-11357.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 11352-11357
-
-
Karlin, S.1
Brocchieri, L.2
Mrazek, J.3
Kaiser, D.4
-
28
-
-
44349120609
-
Analysis of the distribution of functionally relevant rare codons
-
Widmann, M., Clairo, M., Dippon, J., and Pleiss, J. (2008) Analysis of the distribution of functionally relevant rare codons. BMC Genomics 9, 1-8.
-
(2008)
BMC Genomics
, vol.9
, pp. 1-8
-
-
Widmann, M.1
Clairo, M.2
Dippon, J.3
Pleiss, J.4
-
29
-
-
78650304100
-
Synonymous but not the same: The causes and consequences of codon bias
-
Plotkin, J. B., and Kudla, G. (2011) Synonymous but not the same: the causes and consequences of codon bias. Nat. Rev. Genet. 12, 32-42.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 32-42
-
-
Plotkin, J.B.1
Kudla, G.2
-
30
-
-
77957240693
-
Multifactorial determinants of protein expression in prokaryotic open reading frames
-
Allert, M., Cox, J. C., and Hellinga, H. W. (2010) Multifactorial determinants of protein expression in prokaryotic open reading frames. J. Mol. Biol. 402, 905-918.
-
(2010)
J. Mol. Biol.
, vol.402
, pp. 905-918
-
-
Allert, M.1
Cox, J.C.2
Hellinga, H.W.3
-
31
-
-
0034067840
-
Transcription termination control in bacteria
-
Henkin, T. M. (2000) Transcription termination control in bacteria. Curr. Opin. Microbiol. 3, 149-153.
-
(2000)
Curr. Opin. Microbiol.
, vol.3
, pp. 149-153
-
-
Henkin, T.M.1
-
32
-
-
0022555852
-
Transcription termination and the regulation of gene expression
-
Platt, T. (1986) Transcription termination and the regulation of gene expression. Annu. Rev. Biochem. 55, 339-372.
-
(1986)
Annu. Rev. Biochem.
, vol.55
, pp. 339-372
-
-
Platt, T.1
-
33
-
-
0033024420
-
Site-specific recombination of temperate Myxococcus xanthus phage Mx8: Genetic elements required for integration
-
Magrini, V., Creighton, C., and Youderian, P. (1999) Site-specific recombination of temperate Myxococcus xanthus phage Mx8: Genetic elements required for integration. J. Bacteriol. 181, 4050-4061.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 4050-4061
-
-
Magrini, V.1
Creighton, C.2
Youderian, P.3
-
34
-
-
0023650543
-
The codon adaptation index - A measure of directional synonymous codon usage bias, and its potential applications
-
Sharp, P. M., and Li, W. H. (1987) The codon adaptation index - a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 15, 1281-1295.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 1281-1295
-
-
Sharp, P.M.1
Li, W.H.2
-
35
-
-
0033816775
-
Predicted highly expressed genes of diverse prokaryotic genomes
-
Karlin, S., and Mrazek, J. (2000) Predicted highly expressed genes of diverse prokaryotic genomes. J. Bacteriol. 182, 5238-5250.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 5238-5250
-
-
Karlin, S.1
Mrazek, J.2
-
36
-
-
59149092285
-
Gene synthesis demystified
-
Czar, M. J., Anderson, J. C., Bader, J. S., and Peccoud, J. (2009) Gene synthesis demystified. Trends Biotechnol. 27, 63-72.
-
(2009)
Trends Biotechnol.
, vol.27
, pp. 63-72
-
-
Czar, M.J.1
Anderson, J.C.2
Bader, J.S.3
Peccoud, J.4
-
37
-
-
0033668496
-
DNA cloning by homologous recombination in Escherichia coli
-
Zhang, Y., Muyrers, J. P. P., Testa, G., and Stewart, A. F. (2000) DNA cloning by homologous recombination in Escherichia coli. Nat. Biotechnol. 18, 1314-1317.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 1314-1317
-
-
Zhang, Y.1
Muyrers, J.P.P.2
Testa, G.3
Stewart, A.F.4
-
39
-
-
0002651837
-
An overview of evolutionary algorithms for parameter optimization
-
Bäck, T., and Schwefel, H. P. (1993) An overview of evolutionary algorithms for parameter optimization. Evol. Comput. 1, 1-23.
-
(1993)
Evol. Comput.
, vol.1
, pp. 1-23
-
-
Bäck, T.1
Schwefel, H.P.2
-
41
-
-
0000448376
-
Genetic algorithms, tournament selection, and the effects of noise
-
Miller, B. L., and Goldberg, D. E. (1995) Genetic algorithms, tournament selection, and the effects of noise. Complex Syst. 9, 193-212.
-
(1995)
Complex Syst.
, vol.9
, pp. 193-212
-
-
Miller, B.L.1
Goldberg, D.E.2
-
42
-
-
70349964350
-
Automated design of synthetic ribosome binding sites to control protein expression
-
Salis, H. M., Mirsky, E. A., and Voigt, C. A. (2009) Automated design of synthetic ribosome binding sites to control protein expression. Nat. Biotechnol. 27, 946-950.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 946-950
-
-
Salis, H.M.1
Mirsky, E.A.2
Voigt, C.A.3
-
43
-
-
0142214663
-
Characterization of the integrase gene and attachment site for the Myxococcus xanthus bacteriophage Mx9
-
Julien, B. (2003) Characterization of the integrase gene and attachment site for the Myxococcus xanthus bacteriophage Mx9. J. Bacteriol. 185, 6325-6330.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 6325-6330
-
-
Julien, B.1
-
44
-
-
0034903353
-
New natural epothilones from Sorangium cellulosum, strains So ce90/B2 and So ce90/D13: Isolation, structure elucidation, and SAR studies
-
Hardt, I. H., Steinmetz, H., Gerth, K., Sasse, F., Reichenbach, H., and Höfle, G. (2001) New natural epothilones from Sorangium cellulosum, strains So ce90/B2 and So ce90/D13: isolation, structure elucidation, and SAR studies. J. Nat. Prod. 64, 847-856.
-
(2001)
J. Nat. Prod.
, vol.64
, pp. 847-856
-
-
Hardt, I.H.1
Steinmetz, H.2
Gerth, K.3
Sasse, F.4
Reichenbach, H.5
Höfle, G.6
-
45
-
-
84869997377
-
Enhancer binding proteins act as hetero-oligomers and link secondary metabolite production to myxococcal development, motility and predation
-
Volz, C., Kegler, C., and Müller, R. (2012) Enhancer binding proteins act as hetero-oligomers and link secondary metabolite production to myxococcal development, motility and predation. Chem. Biol. http://dx.doi.org/10.1016/j.chembiol.2012.09.010.
-
(2012)
Chem. Biol.
-
-
Volz, C.1
Kegler, C.2
Müller, R.3
-
46
-
-
48649107701
-
Two functionally redundant Sfp-type 4′-phosphopantetheinyl transferases differentially activate biosynthetic pathways in Myxococcus xanthus
-
Meiser, P., and Müller, R. (2008) Two functionally redundant Sfp-type 4′-phosphopantetheinyl transferases differentially activate biosynthetic pathways in Myxococcus xanthus. ChemBioChem 9, 1549-1553.
-
(2008)
ChemBioChem
, vol.9
, pp. 1549-1553
-
-
Meiser, P.1
Müller, R.2
-
47
-
-
10644255526
-
Advanced genetic strategies for recombinant protein expression in Escherichia coli
-
Sorensen, H. P., and Mortensen, K. K. (2005) Advanced genetic strategies for recombinant protein expression in Escherichia coli. J. Biotechnol. 115, 113-128.
-
(2005)
J. Biotechnol.
, vol.115
, pp. 113-128
-
-
Sorensen, H.P.1
Mortensen, K.K.2
-
48
-
-
84860231100
-
The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria
-
Li, G. W., Oh, E., and Weissman, J. S. (2012) The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria. Nature 484, 538-541.
-
(2012)
Nature
, vol.484
, pp. 538-541
-
-
Li, G.W.1
Oh, E.2
Weissman, J.S.3
-
49
-
-
77954472829
-
Construction and performance of heterologous polyketide-producing K-12- and B-derived Escherichia coli
-
Wu, J., Boghigian, B. A., Myint, M., Zhang, H., Zhang, S., and Pfeifer, B. A. (2010) Construction and performance of heterologous polyketide-producing K-12- and B-derived Escherichia coli. Lett. Appl. Microbiol. 51, 196-204.
-
(2010)
Lett. Appl. Microbiol.
, vol.51
, pp. 196-204
-
-
Wu, J.1
Boghigian, B.A.2
Myint, M.3
Zhang, H.4
Zhang, S.5
Pfeifer, B.A.6
-
50
-
-
84865098071
-
Silent substitutions predictably alter translation elongation rates and protein folding efficiencies
-
Spencer, P. S., Siller, E., Anderson, J. F., and Barral, J. M. (2012) Silent substitutions predictably alter translation elongation rates and protein folding efficiencies. J. Mol. Biol. 422, 328-335.
-
(2012)
J. Mol. Biol.
, vol.422
, pp. 328-335
-
-
Spencer, P.S.1
Siller, E.2
Anderson, J.F.3
Barral, J.M.4
-
51
-
-
62049083910
-
Transient ribosomal attenuation coordinates protein synthesis and co-translational folding
-
Zhang, G., Hubalewska, M., and Ignatova, Z. (2009) Transient ribosomal attenuation coordinates protein synthesis and co-translational folding. Nat. Struct. Mol. Biol. 16, 274-280.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 274-280
-
-
Zhang, G.1
Hubalewska, M.2
Ignatova, Z.3
-
52
-
-
77951722801
-
How the sequence of a gene can tune its translation
-
Fredrick, K., and Ibba, M. (2010) How the sequence of a gene can tune its translation. Cell 141, 227-229.
-
(2010)
Cell
, vol.141
, pp. 227-229
-
-
Fredrick, K.1
Ibba, M.2
-
53
-
-
77951715627
-
An evolutionarily conserved mechanism for controlling the efficiency of protein translation
-
Tuller, T., Carmi, A., Vestsigian, K., Navon, S., Dorfan, Y., Zaborske, J., Pan, T., Dahan, O., Furman, I., and Pilpel, Y. (2010) An evolutionarily conserved mechanism for controlling the efficiency of protein translation. Cell 141, 344-354.
-
(2010)
Cell
, vol.141
, pp. 344-354
-
-
Tuller, T.1
Carmi, A.2
Vestsigian, K.3
Navon, S.4
Dorfan, Y.5
Zaborske, J.6
Pan, T.7
Dahan, O.8
Furman, I.9
Pilpel, Y.10
-
54
-
-
77951734603
-
A role for codon order in translation dynamics
-
Cannarozzi, G., Schraudolph, N. N., Faty, M., von, R. P., Friberg, M. T., Roth, A. C., Gonnet, P., Gonnet, G., and Barral, Y. (2010) A role for codon order in translation dynamics. Cell 141, 355-367.
-
(2010)
Cell
, vol.141
, pp. 355-367
-
-
Cannarozzi, G.1
Schraudolph, N.N.2
Faty, M.3
Von, R.P.4
Friberg, M.T.5
Roth, A.C.6
Gonnet, P.7
Gonnet, G.8
Barral, Y.9
-
55
-
-
58249090246
-
The native 3D organization of bacterial polysomes
-
Brandt, F., Etchells, S. A., Ortiz, J. O., Elcock, A. H., Hartl, F. U., and Baumeister, W. (2009) The native 3D organization of bacterial polysomes. Cell 136, 261-271.
-
(2009)
Cell
, vol.136
, pp. 261-271
-
-
Brandt, F.1
Etchells, S.A.2
Ortiz, J.O.3
Elcock, A.H.4
Hartl, F.U.5
Baumeister, W.6
-
56
-
-
0141519339
-
Widespread selection for local RNA secondary structure in coding regions of bacterial genes
-
Katz, L., and Burge, C. B. (2003) Widespread selection for local RNA secondary structure in coding regions of bacterial genes. Genome Res. 13, 2042-2051.
-
(2003)
Genome Res.
, vol.13
, pp. 2042-2051
-
-
Katz, L.1
Burge, C.B.2
-
57
-
-
66849109240
-
The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins
-
Kramer, G., Boehringer, D., Ban, N., and Bukau, B. (2009) The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins. Nat. Struct. Mol. Biol. 16, 589-597.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 589-597
-
-
Kramer, G.1
Boehringer, D.2
Ban, N.3
Bukau, B.4
-
58
-
-
79957812064
-
Birth, life and death of nascent polypeptide chains
-
Jha, S., and Komar, A. A. (2011) Birth, life and death of nascent polypeptide chains. Biotechnol. J. 6, 623-640.
-
(2011)
Biotechnol. J.
, vol.6
, pp. 623-640
-
-
Jha, S.1
Komar, A.A.2
-
59
-
-
54249096045
-
Electrostatics in the ribosomal tunnel modulate chain elongation rates
-
Lu, J., and Deutsch, C. (2008) Electrostatics in the ribosomal tunnel modulate chain elongation rates. J. Mol. Biol. 384, 73-86.
-
(2008)
J. Mol. Biol.
, vol.384
, pp. 73-86
-
-
Lu, J.1
Deutsch, C.2
-
60
-
-
84863281523
-
Synonymous codon ordering: A subtle but prevalent strategy of bacteria to improve translational efficiency
-
Shao, Z. Q., Zhang, Y. M., Feng, X. Y., Wang, B., and Chen, J. Q. (2012) Synonymous codon ordering: a subtle but prevalent strategy of bacteria to improve translational efficiency. PLoS ONE 7, e33547.
-
(2012)
PLoS ONE
, vol.7
, pp. e33547
-
-
Shao, Z.Q.1
Zhang, Y.M.2
Feng, X.Y.3
Wang, B.4
Chen, J.Q.5
-
61
-
-
73349100056
-
Selection for minimization of translational frameshifting errors as a factor in the evolution of codon usage
-
Huang, Y., Koonin, E. V., Lipman, D. J., and Przytycka, T. M. (2009) Selection for minimization of translational frameshifting errors as a factor in the evolution of codon usage. Nucleic Acids Res. 37, 6799-6810.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 6799-6810
-
-
Huang, Y.1
Koonin, E.V.2
Lipman, D.J.3
Przytycka, T.M.4
-
62
-
-
84855291528
-
mRNA pseudoknot structures can act as ribosomal roadblocks
-
Tholstrup, J., Oddershede, L. B., and Sorensen, M. A. (2012) mRNA pseudoknot structures can act as ribosomal roadblocks. Nucleic Acids Res. 40, 303-313.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 303-313
-
-
Tholstrup, J.1
Oddershede, L.B.2
Sorensen, M.A.3
-
63
-
-
77958478351
-
Unique cost dynamics elucidate the role of frameshifting errors in promoting translational robustness
-
Warnecke, T., Huang, Y., Przytycka, T. M., and Hurst, L. D. (2010) Unique cost dynamics elucidate the role of frameshifting errors in promoting translational robustness. Genome Biol. Evol. 2, 636-645.
-
(2010)
Genome Biol. Evol.
, vol.2
, pp. 636-645
-
-
Warnecke, T.1
Huang, Y.2
Przytycka, T.M.3
Hurst, L.D.4
-
64
-
-
84859776222
-
The future of metabolic engineering and synthetic biology: Towards a systematic practice
-
Yadav, V. G., De, M. M., Lim, C. G., Ajikumar, P. K., and Stephanopoulos, G. (2012) The future of metabolic engineering and synthetic biology: towards a systematic practice. Metab. Eng. 14, 233-241.
-
(2012)
Metab. Eng.
, vol.14
, pp. 233-241
-
-
Yadav, V.G.1
De, M.M.2
Lim, C.G.3
Ajikumar, P.K.4
Stephanopoulos, G.5
-
65
-
-
84864258618
-
A whole-cell computational model predicts phenotype from genotype
-
Karr, J. R., Sanghvi, J. C., Macklin, D. N., Gutschow, M. V., Jacobs, J. M., Bolival, B., Jr., Assad-Garcia, N., Glass, J. I., and Covert, M. W. (2012) A whole-cell computational model predicts phenotype from genotype. Cell 150, 389-401.
-
(2012)
Cell
, vol.150
, pp. 389-401
-
-
Karr, J.R.1
Sanghvi, J.C.2
Macklin, D.N.3
Gutschow, M.V.4
Jacobs, J.M.5
Bolival, B.6
Assad-Garcia, N.7
Glass, J.I.8
Covert, M.W.9
-
66
-
-
84856942796
-
-
Drummond, A. J., Ashton, B., Buxton, S., Cheung, M., Heled, J., Kearse, M., Moir, R., Stones-Havas, S., Thierer, T., and Wilson, A. (2011) Geneious v5, 6.
-
(2011)
Geneious V5
, pp. 6
-
-
Drummond, A.J.1
Ashton, B.2
Buxton, S.3
Cheung, M.4
Heled, J.5
Kearse, M.6
Moir, R.7
Stones-Havas, S.8
Thierer, T.9
Wilson, A.10
-
67
-
-
64249084052
-
Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data
-
Bachmann, B. O., and Ravel, J. (2009) Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data. Methods Enymol. 458, 181-217.
-
(2009)
Methods Enymol.
, vol.458
, pp. 181-217
-
-
Bachmann, B.O.1
Ravel, J.2
-
68
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J. H., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.H.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
69
-
-
35948983363
-
Complete genome sequence of the myxobacterium Sorangium cellulosum
-
Schneiker, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M. O., Bartels, D., Bekel, T., Beyer, S., Bode, E., Bode, H. B., Bolten, C. J., Choudhuri, J. V., Doss, S., Elnakady, Y. A., Frank, B., Gaigalat, L., Goesmann, A., Groeger, C., Gross, F., Jelsbak, L., Jelsbak, L., Kalinowski, J., Kegler, C., Knauber, T., Konietzny, S., Kopp, M., Krause, L., Krug, D., Linke, B., Mahmud, T., Martinez-Arias, R., McHardy, A. C., Merai, M., Meyer, F., Mormann, S., Munoz-Dorado, J., Perez, J., Pradella, S., Rachid, S., Raddatz, G., Rosenau, F., Rückert, C., Sasse, F., Scharfe, M., Schuster, S. C., Suen, G., Treuner-Lange, A., Velicer, G. J., Vorhölter, F. J., Weissman, K. J., Welch, R. D., Wenzel, S. C., Whitworth, D. E., Wilhelm, S., Wittmann, C., Blöcker, H., Pühler, A., and Müller, R. (2007) Complete genome sequence of the myxobacterium Sorangium cellulosum. Nat. Biotechnol. 25, 1281-1289.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 1281-1289
-
-
Schneiker, S.1
Perlova, O.2
Kaiser, O.3
Gerth, K.4
Alici, A.5
Altmeyer, M.O.6
Bartels, D.7
Bekel, T.8
Beyer, S.9
Bode, E.10
Bode, H.B.11
Bolten, C.J.12
Choudhuri, J.V.13
Doss, S.14
Elnakady, Y.A.15
Frank, B.16
Gaigalat, L.17
Goesmann, A.18
Groeger, C.19
Gross, F.20
Jelsbak, L.21
Jelsbak, L.22
Kalinowski, J.23
Kegler, C.24
Knauber, T.25
Konietzny, S.26
Kopp, M.27
Krause, L.28
Krug, D.29
Linke, B.30
Mahmud, T.31
Martinez-Arias, R.32
McHardy, A.C.33
Merai, M.34
Meyer, F.35
Mormann, S.36
Munoz-Dorado, J.37
Perez, J.38
Pradella, S.39
Rachid, S.40
Raddatz, G.41
Rosenau, F.42
Rückert, C.43
Sasse, F.44
Scharfe, M.45
Schuster, S.C.46
Suen, G.47
Treuner-Lange, A.48
Velicer, G.J.49
Vorhölter, F.J.50
Weissman, K.J.51
Welch, R.D.52
Wenzel, S.C.53
Whitworth, D.E.54
Wilhelm, S.55
Wittmann, C.56
Blöcker, H.57
Pühler, A.58
Müller, R.59
more..
-
70
-
-
15744396410
-
Structure and biosynthesis of myxochromides S1-3 in Stigmatella aurantiaca: Evidence for an iterative bacterial type I polyketide synthase and for module skipping in nonribosomal peptide biosynthesis
-
Wenzel, S. C., Kunze, B., Höfle, G., Silakowski, B., Scharfe, M., Blöcker, H., and Müller, R. (2005) Structure and biosynthesis of myxochromides S1-3 in Stigmatella aurantiaca: Evidence for an iterative bacterial type I polyketide synthase and for module skipping in nonribosomal peptide biosynthesis. ChemBioChem 6, 375-385.
-
(2005)
ChemBioChem
, vol.6
, pp. 375-385
-
-
Wenzel, S.C.1
Kunze, B.2
Höfle, G.3
Silakowski, B.4
Scharfe, M.5
Blöcker, H.6
Müller, R.7
-
71
-
-
0034201441
-
EMBOSS: The European molecular biology open software suite
-
Rice, P., Longden, I., and Bleasby, A. (2000) EMBOSS: The European molecular biology open software suite. Trends Genet. 16, 276-277.
-
(2000)
Trends Genet.
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
73
-
-
0022779710
-
A global analysis of developmentally regulated genes in Myxococcus xanthus
-
Kroos, L., Kuspa, A., and Kaiser, D. (1986) A global analysis of developmentally regulated genes in Myxococcus xanthus. Dev. Biol. 117, 252-266.
-
(1986)
Dev. Biol.
, vol.117
, pp. 252-266
-
-
Kroos, L.1
Kuspa, A.2
Kaiser, D.3
-
75
-
-
0003140039
-
Predictive models for the breeder genetic algorithm I. Continuous parameter optimization
-
Mühlenbein, H., and Schlierkamp-Voosen, D. (1993) Predictive models for the breeder genetic algorithm I. Continuous parameter optimization. Evol. Comput. 1, 25-49.
-
(1993)
Evol. Comput.
, vol.1
, pp. 25-49
-
-
Mühlenbein, H.1
Schlierkamp-Voosen, D.2
-
76
-
-
0032021105
-
Genotypic and phenotypic assortative mating in genetic algorithm
-
De, S., Pal, S. K., and Gosh, A. (1998) Genotypic and phenotypic assortative mating in genetic algorithm. Inf. Sci. 105, 209-226.
-
(1998)
Inf. Sci.
, vol.105
, pp. 209-226
-
-
De, S.1
Pal, S.K.2
Gosh, A.3
-
77
-
-
0002674294
-
Improving the performance of genetic algorithms in classifier systems
-
Lawrence Erlbaum Associates, Mahwah, NJ
-
Booker, L. (1985) Improving the performance of genetic algorithms in classifier systems, in Proceedings of the First International Conference on Genetic Algorithms, pp 80-92, Lawrence Erlbaum Associates, Mahwah, NJ.
-
(1985)
Proceedings of the First International Conference on Genetic Algorithms
, pp. 80-92
-
-
Booker, L.1
|