-
1
-
-
84907896654
-
-
http://www.ebi.ac.uk/industry
-
-
-
-
2
-
-
77953655331
-
Potential aggregation prone regions in biotherapeutics: A survey of commercial monoclonal antibodies
-
X. Wang, T.K. Das, S.K. Singh, and S. Kumar Potential aggregation prone regions in biotherapeutics: a survey of commercial monoclonal antibodies MAbs 1 2009 254 267
-
(2009)
MAbs
, vol.1
, pp. 254-267
-
-
Wang, X.1
Das, T.K.2
Singh, S.K.3
Kumar, S.4
-
3
-
-
67749111952
-
Design of therapeutic proteins with enhanced stability
-
N. Chennamsetty, V. Voynov, V. Kayser, B. Helk, and B.L. Trout Design of therapeutic proteins with enhanced stability Proc. Natl. Acad. Sci. U. S. A. 106 2009 11937 11942
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 11937-11942
-
-
Chennamsetty, N.1
Voynov, V.2
Kayser, V.3
Helk, B.4
Trout, B.L.5
-
4
-
-
10744222698
-
Engineered human IgG antibodies with longer serum half-lives in primates
-
P.R. Hinton, M.G. Johlfs, J.M. Xiong, K. Hanestad, K.C. Ong, C. Bullock, S. Keller, M.T. Tang, J.Y. Tso, M. Vasquez, and N. Tsurushita Engineered human IgG antibodies with longer serum half-lives in primates J. Biol. Chem. 279 2004 6213 6216
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 6213-6216
-
-
Hinton, P.R.1
Johlfs, M.G.2
Xiong, J.M.3
Hanestad, K.4
Ong, K.C.5
Bullock, C.6
Keller, S.7
Tang, M.T.8
Tso, J.Y.9
Vasquez, M.10
Tsurushita, N.11
-
5
-
-
33845930317
-
Humanized IgG1 variants with differential binding properties to the neonatal Fc receptor: Relationship to pharmacokinetics in mice and primates
-
A. Datta-Mannan, D.R. Witcher, Y. Tang, J. Watkins, W. Jiang, and V.J. Wroblewski Humanized IgG1 variants with differential binding properties to the neonatal Fc receptor: relationship to pharmacokinetics in mice and primates Drug Metab. Dispos. 35 2007 86 94
-
(2007)
Drug Metab. Dispos.
, vol.35
, pp. 86-94
-
-
Datta-Mannan, A.1
Witcher, D.R.2
Tang, Y.3
Watkins, J.4
Jiang, W.5
Wroblewski, V.J.6
-
7
-
-
50549090182
-
PIGS: Automatic prediction of antibody structures
-
P. Marcatili, A. Rosi, and A. Tramontano PIGS: automatic prediction of antibody structures Bioinformatics 24 2008 1953 1954
-
(2008)
Bioinformatics
, vol.24
, pp. 1953-1954
-
-
Marcatili, P.1
Rosi, A.2
Tramontano, A.3
-
8
-
-
57349097173
-
Structural classification of CDR-H3 revisited: A lesson in antibody modeling
-
D. Kuroda, H. Shirai, M. Kobori, and H. Nakamura Structural classification of CDR-H3 revisited: a lesson in antibody modeling Proteins 73 2008 608 620
-
(2008)
Proteins
, vol.73
, pp. 608-620
-
-
Kuroda, D.1
Shirai, H.2
Kobori, M.3
Nakamura, H.4
-
9
-
-
84883856643
-
Developability studies before initiation of process development: Improving manufacturability of monoclonal antibodies
-
X. Yang, W. Xu, S. Dukleska, S. Benchaar, S. Mengisen, V. Antochshuk, J. Cheung, L. Mann, Z. Babadjanova, J. Rowand, R. Gunawan, A. McCampbell, M. Beaumont, D. Meininger, D. Richardson, and A. Ambrogelly Developability studies before initiation of process development: improving manufacturability of monoclonal antibodies MAbs 5 2013 787 794
-
(2013)
MAbs
, vol.5
, pp. 787-794
-
-
Yang, X.1
Xu, W.2
Dukleska, S.3
Benchaar, S.4
Mengisen, S.5
Antochshuk, V.6
Cheung, J.7
Mann, L.8
Babadjanova, Z.9
Rowand, J.10
Gunawan, R.11
McCampbell, A.12
Beaumont, M.13
Meininger, D.14
Richardson, D.15
Ambrogelly, A.16
-
10
-
-
84888022850
-
T-cell dependent immunogenicity of protein therapeutics: Preclinical assessment and mitigation
-
V. Jawa, L.P. Cousens, M. Awwad, E. Wakshull, H. Kropshofer, and A.S. De Groot T-cell dependent immunogenicity of protein therapeutics: preclinical assessment and mitigation Clin. Immunol. 149 2013 534 555
-
(2013)
Clin. Immunol.
, vol.149
, pp. 534-555
-
-
Jawa, V.1
Cousens, L.P.2
Awwad, M.3
Wakshull, E.4
Kropshofer, H.5
De Groot, A.S.6
-
11
-
-
84886544432
-
Evaluating the immunogenicity of protein drugs by applying in vitro MHC binding data and the immune epitope database and analysis resource
-
S. Paul, R.V. Kolla, J. Sidney, D. Weiskopf, W. Fleri, Y. Kim, B. Peters, and A. Sette Evaluating the immunogenicity of protein drugs by applying in vitro MHC binding data and the immune epitope database and analysis resource Clin. Dev. Immunol. 2013 2013 467852
-
(2013)
Clin. Dev. Immunol.
, vol.2013
, pp. 467852
-
-
Paul, S.1
Kolla, R.V.2
Sidney, J.3
Weiskopf, D.4
Fleri, W.5
Kim, Y.6
Peters, B.7
Sette, A.8
-
12
-
-
77956688921
-
Monoclonal antibodies isolated without screening by analyzing the variable-gene repertoire of plasma cells
-
S.T. Reddy, X. Ge, A.E. Miklos, R.A. Hughes, S.H. Kang, K.H. Hoi, C. Chrysostomou, S.P. Hunicke-Smith, B.L. Iverson, P.W. Tucker, A.D. Ellington, and G. Georgiou Monoclonal antibodies isolated without screening by analyzing the variable-gene repertoire of plasma cells Nat. Biotechnol. 28 2010 965 969
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 965-969
-
-
Reddy, S.T.1
Ge, X.2
Miklos, A.E.3
Hughes, R.A.4
Kang, S.H.5
Hoi, K.H.6
Chrysostomou, C.7
Hunicke-Smith, S.P.8
Iverson, B.L.9
Tucker, P.W.10
Ellington, A.D.11
Georgiou, G.12
-
13
-
-
80052942203
-
Focused evolution of HIV-1 neutralizing antibodies revealed by structures and deep sequencing
-
X. Wu, T. Zhou, J. Zhu, B. Zhang, I. Georgiev, C. Wang, X. Chen, N.S. Longo, M. Louder, K. McKee, S. O'Dell, S. Perfetto, S.D. Schmidt, W. Shi, L. Wu, Y. Yang, Z.Y. Yang, Z. Yang, Z. Zhang, M. Bonsignori, J.A. Crump, S.H. Kapiga, N.E. Sam, B.F. Haynes, M. Simek, D.R. Burton, W.C. Koff, N.A. Doria-Rose, M. Connors, J.C. Mullikin, G.J. Nabel, M. Roederer, L. Shapiro, P.D. Kwong, and J.R. Mascola Focused evolution of HIV-1 neutralizing antibodies revealed by structures and deep sequencing Science 333 2011 1593 1602
-
(2011)
Science
, vol.333
, pp. 1593-1602
-
-
Wu, X.1
Zhou, T.2
Zhu, J.3
Zhang, B.4
Georgiev, I.5
Wang, C.6
Chen, X.7
Longo, N.S.8
Louder, M.9
McKee, K.10
O'Dell, S.11
Perfetto, S.12
Schmidt, S.D.13
Shi, W.14
Wu, L.15
Yang, Y.16
Yang, Z.Y.17
Yang, Z.18
Zhang, Z.19
Bonsignori, M.20
Crump, J.A.21
Kapiga, S.H.22
Sam, N.E.23
Haynes, B.F.24
Simek, M.25
Burton, D.R.26
Koff, W.C.27
Doria-Rose, N.A.28
Connors, M.29
Mullikin, J.C.30
Nabel, G.J.31
Roederer, M.32
Shapiro, L.33
Kwong, P.D.34
Mascola, J.R.35
more..
-
15
-
-
84860145921
-
Structure-based design of supercharged, highly thermoresistant antibodies
-
A.E. Miklos, C. Kluwe, B.S. Der, S. Pai, A. Sircar, R.A. Hughes, M. Berrondo, J. Xu, V. Codrea, P.E. Buckley, A.M. Calm, H.S. Welsh, C.R. Warner, M.A. Zacharko, J.P. Carney, J.J. Gray, G. Georgiou, B. Kuhlman, and A.D. Ellington Structure-based design of supercharged, highly thermoresistant antibodies Chem. Biol. 19 2012 449 455
-
(2012)
Chem. Biol.
, vol.19
, pp. 449-455
-
-
Miklos, A.E.1
Kluwe, C.2
Der, B.S.3
Pai, S.4
Sircar, A.5
Hughes, R.A.6
Berrondo, M.7
Xu, J.8
Codrea, V.9
Buckley, P.E.10
Calm, A.M.11
Welsh, H.S.12
Warner, C.R.13
Zacharko, M.A.14
Carney, J.P.15
Gray, J.J.16
Georgiou, G.17
Kuhlman, B.18
Ellington, A.D.19
-
16
-
-
84894965507
-
Structure-based non-canonical amino acid design to covalently crosslink an antibody-antigen complex
-
J. Xu, D. Tack, R.A. Hughes, A.D. Ellington, and J.J. Gray Structure-based non-canonical amino acid design to covalently crosslink an antibody-antigen complex J. Struct. Biol. 185 2014 215 222
-
(2014)
J. Struct. Biol.
, vol.185
, pp. 215-222
-
-
Xu, J.1
Tack, D.2
Hughes, R.A.3
Ellington, A.D.4
Gray, J.J.5
-
17
-
-
84900334163
-
Affinity improvement of a therapeutic antibody by structure-based computational design: Generation of electrostatic interactions in the transition state stabilizes the antibody-antigen complex
-
M. Kiyoshi, J.M. Caaveiro, E. Miura, S. Nagatoishi, M. Nakakido, S. Soga, H. Shirai, S. Kawabata, and K. Tsumoto Affinity improvement of a therapeutic antibody by structure-based computational design: generation of electrostatic interactions in the transition state stabilizes the antibody-antigen complex PLoS One 9 2014 e87099
-
(2014)
PLoS One
, vol.9
, pp. 87099
-
-
Kiyoshi, M.1
Caaveiro, J.M.2
Miura, E.3
Nagatoishi, S.4
Nakakido, M.5
Soga, S.6
Shirai, H.7
Kawabata, S.8
Tsumoto, K.9
-
18
-
-
84907902518
-
-
http://www.chemcomp.com/index.htm
-
-
-
-
19
-
-
84907902497
-
-
http://accelrys.com/
-
-
-
-
20
-
-
84890506396
-
Improving the affinity of an antibody for its antigen via long-range electrostatic interactions
-
A. Fukunaga, and K. Tsumoto Improving the affinity of an antibody for its antigen via long-range electrostatic interactions Protein Eng. Des. Sel. 26 2013 773 780
-
(2013)
Protein Eng. Des. Sel.
, vol.26
, pp. 773-780
-
-
Fukunaga, A.1
Tsumoto, K.2
-
21
-
-
84876862822
-
Redesign of a cross-reactive antibody to dengue virus with broad-spectrum activity and increased in vivo potency
-
K. Tharakaraman, L.N. Robinson, A. Hatas, Y.L. Chen, L. Siyue, S. Raguram, V. Sasisekharan, G.N. Wogan, and R. Sasisekharan Redesign of a cross-reactive antibody to dengue virus with broad-spectrum activity and increased in vivo potency Proc. Natl. Acad. Sci. U. S. A. 110 2013 E1555 E1564
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 1555-E1564
-
-
Tharakaraman, K.1
Robinson, L.N.2
Hatas, A.3
Chen, Y.L.4
Siyue, L.5
Raguram, S.6
Sasisekharan, V.7
Wogan, G.N.8
Sasisekharan, R.9
-
22
-
-
0014828908
-
An analysis of the sequences of the variable regions of Bence Jones proteins and myeloma light chains and their implications for antibody complementarity
-
T.T. Wu, and E.A. Kabat An analysis of the sequences of the variable regions of Bence Jones proteins and myeloma light chains and their implications for antibody complementarity J. Exp. Med. 132 1970 211 250
-
(1970)
J. Exp. Med.
, vol.132
, pp. 211-250
-
-
Wu, T.T.1
Kabat, E.A.2
-
23
-
-
0023278330
-
Canonical structures for the hypervariable regions of immunoglobulins
-
C. Chothia, and A.M. Lesk Canonical structures for the hypervariable regions of immunoglobulins J. Mol. Biol. 196 1987 901 917
-
(1987)
J. Mol. Biol.
, vol.196
, pp. 901-917
-
-
Chothia, C.1
Lesk, A.M.2
-
24
-
-
0024844388
-
Conformations of immunoglobulin hypervariable regions
-
C. Chothia, A.M. Lesk, A. Tramontano, M. Levitt, S.J. Smith-Gill, G. Air, S. Sheriff, E.A. Padlan, D. Davies, and W.R. Tulip Conformations of immunoglobulin hypervariable regions Nature 342 1989 877 883
-
(1989)
Nature
, vol.342
, pp. 877-883
-
-
Chothia, C.1
Lesk, A.M.2
Tramontano, A.3
Levitt, M.4
Smith-Gill, S.J.5
Air, G.6
Sheriff, S.7
Padlan, E.A.8
Davies, D.9
Tulip, W.R.10
-
25
-
-
79251598995
-
A new clustering of antibody CDR loop conformations
-
B. North, A. Lehmann, and R.L. Dunbrack A new clustering of antibody CDR loop conformations J. Mol. Biol. 406 2011 228 256
-
(2011)
J. Mol. Biol.
, vol.406
, pp. 228-256
-
-
North, B.1
Lehmann, A.2
Dunbrack, R.L.3
-
26
-
-
0031558798
-
Standard conformations for the canonical structures of immunoglobulins
-
B. Al-Lazikani, A.M. Lesk, and C. Chothia Standard conformations for the canonical structures of immunoglobulins J. Mol. Biol. 273 1997 927 948
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 927-948
-
-
Al-Lazikani, B.1
Lesk, A.M.2
Chothia, C.3
-
27
-
-
79954591066
-
Structural repertoire of immunoglobulin lambda light chains
-
A. Chailyan, P. Marcatili, D. Cirillo, and A. Tramontano Structural repertoire of immunoglobulin lambda light chains Proteins 79 2011 1513 1524
-
(2011)
Proteins
, vol.79
, pp. 1513-1524
-
-
Chailyan, A.1
Marcatili, P.2
Cirillo, D.3
Tramontano, A.4
-
28
-
-
65249106714
-
Systematic classification of CDR-L3 in antibodies: Implications of the light chain subtypes and the VL-VH interface
-
D. Kuroda, H. Shirai, M. Kobori, and H. Nakamura Systematic classification of CDR-L3 in antibodies: implications of the light chain subtypes and the VL-VH interface Proteins 75 2009 139 146
-
(2009)
Proteins
, vol.75
, pp. 139-146
-
-
Kuroda, D.1
Shirai, H.2
Kobori, M.3
Nakamura, H.4
-
29
-
-
0030589039
-
Structural families in loops of homologous proteins: Automatic classification, modelling and application to antibodies
-
A.C. Martin, and J.M. Thornton Structural families in loops of homologous proteins: automatic classification, modelling and application to antibodies J. Mol. Biol. 263 1996 800 815
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 800-815
-
-
Martin, A.C.1
Thornton, J.M.2
-
30
-
-
79956358111
-
CDNA sequence and Fab crystal structure of HL4E10, a hamster IgG lambda light chain antibody stimulatory for gammadelta T cells
-
P. Verdino, D.A. Witherden, K. Podshivalova, S.E. Rieder, W.L. Havran, and I.A. Wilson cDNA sequence and Fab crystal structure of HL4E10, a hamster IgG lambda light chain antibody stimulatory for gammadelta T cells PLoS One 6 2011 e19828
-
(2011)
PLoS One
, vol.6
, pp. 19828
-
-
Verdino, P.1
Witherden, D.A.2
Podshivalova, K.3
Rieder, S.E.4
Havran, W.L.5
Wilson, I.A.6
-
31
-
-
79958056394
-
Analysis and modeling of the variable region of camelid single-domain antibodies
-
A. Sircar, K.A. Sanni, J. Shi, and J.J. Gray Analysis and modeling of the variable region of camelid single-domain antibodies J. Immunol. 186 2011 6357 6367
-
(2011)
J. Immunol.
, vol.186
, pp. 6357-6367
-
-
Sircar, A.1
Sanni, K.A.2
Shi, J.3
Gray, J.J.4
-
32
-
-
0031596845
-
A single VH family and long CDR3s are the targets for hypermutation in bovine immunoglobulin heavy chains
-
O. Lopez, C. Perez, and D. Wylie A single VH family and long CDR3s are the targets for hypermutation in bovine immunoglobulin heavy chains Immunol. Rev. 162 1998 55 66
-
(1998)
Immunol. Rev.
, vol.162
, pp. 55-66
-
-
Lopez, O.1
Perez, C.2
Wylie, D.3
-
33
-
-
84878821153
-
Reshaping antibody diversity
-
F. Wang, D.C. Ekiert, I. Ahmad, W. Yu, Y. Zhang, O. Bazirgan, A. Torkamani, T. Raudsepp, W. Mwangi, M.F. Criscitiello, I.A. Wilson, P.G. Schultz, and V.V. Smider Reshaping antibody diversity Cell 153 2013 1379 1393
-
(2013)
Cell
, vol.153
, pp. 1379-1393
-
-
Wang, F.1
Ekiert, D.C.2
Ahmad, I.3
Yu, W.4
Zhang, Y.5
Bazirgan, O.6
Torkamani, A.7
Raudsepp, T.8
Mwangi, W.9
Criscitiello, M.F.10
Wilson, I.A.11
Schultz, P.G.12
Smider, V.V.13
-
34
-
-
0034458999
-
WAM: An improved algorithm for modelling antibodies on the WEB
-
N.R. Whitelegg, and A.R. Rees WAM: an improved algorithm for modelling antibodies on the WEB Protein Eng. 13 2000 819 824
-
(2000)
Protein Eng.
, vol.13
, pp. 819-824
-
-
Whitelegg, N.R.1
Rees, A.R.2
-
35
-
-
0025334945
-
Molecular modelling study of antigen binding to oxazolone-specific antibodies: The Ox1 idiotypic IgG and its mature variant with increased affinity to 2-phenyloxazolone
-
L. Holm, L. Laaksonen, M. Kaartinen, T.T. Teeri, and J.K. Knowles Molecular modelling study of antigen binding to oxazolone-specific antibodies: the Ox1 idiotypic IgG and its mature variant with increased affinity to 2-phenyloxazolone Protein Eng. 3 1990 403 409
-
(1990)
Protein Eng.
, vol.3
, pp. 403-409
-
-
Holm, L.1
Laaksonen, L.2
Kaartinen, M.3
Teeri, T.T.4
Knowles, J.K.5
-
37
-
-
67849111558
-
RosettaAntibody: Antibody variable region homology modeling server
-
A. Sircar, E.T. Kim, and J.J. Gray RosettaAntibody: antibody variable region homology modeling server Nucleic Acids Res. 37 2009 W474 W479
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 474-W479
-
-
Sircar, A.1
Kim, E.T.2
Gray, J.J.3
-
38
-
-
84904468725
-
Blind prediction performance of RosettaAntibody 3.0: Grafting, relaxation, kinematic loop modeling, and full CDR optimization
-
B.D. Weitzner, D. Kuroda, N. Marze, J. Xu, and J.J. Gray Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization Proteins 82 2014 1611 1623
-
(2014)
Proteins
, vol.82
, pp. 1611-1623
-
-
Weitzner, B.D.1
Kuroda, D.2
Marze, N.3
Xu, J.4
Gray, J.J.5
-
39
-
-
77950673061
-
Practically useful: What the Rosetta protein modeling suite can do for you
-
K.W. Kaufmann, G.H. Lemmon, S.L. Deluca, J.H. Sheehan, and J. Meiler Practically useful: what the Rosetta protein modeling suite can do for you Biochemistry 49 2010 2987 2998
-
(2010)
Biochemistry
, vol.49
, pp. 2987-2998
-
-
Kaufmann, K.W.1
Lemmon, G.H.2
Deluca, S.L.3
Sheehan, J.H.4
Meiler, J.5
-
40
-
-
78650905964
-
ROSETTA3: An object-oriented software suite for the simulation and design of macromolecules
-
A. Leaver-Fay, M. Tyka, S.M. Lewis, O.F. Lange, J. Thompson, R. Jacak, K. Kaufman, P.D. Renfrew, C.A. Smith, W. Sheffler, I.W. Davis, S. Cooper, A. Treuille, D.J. Mandell, F. Richter, Y.E. Ban, S.J. Fleishman, J.E. Corn, D.E. Kim, S. Lyskov, M. Berrondo, S. Mentzer, Z. Popovic, J.J. Havranek, J. Karanicolas, R. Das, J. Meiler, T. Kortemme, J.J. Gray, B. Kuhlman, D. Baker, and P. Bradley ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules Methods Enzymol. 487 2011 545 574
-
(2011)
Methods Enzymol.
, vol.487
, pp. 545-574
-
-
Leaver-Fay, A.1
Tyka, M.2
Lewis, S.M.3
Lange, O.F.4
Thompson, J.5
Jacak, R.6
Kaufman, K.7
Renfrew, P.D.8
Smith, C.A.9
Sheffler, W.10
Davis, I.W.11
Cooper, S.12
Treuille, A.13
Mandell, D.J.14
Richter, F.15
Ban, Y.E.16
Fleishman, S.J.17
Corn, J.E.18
Kim, D.E.19
Lyskov, S.20
Berrondo, M.21
Mentzer, S.22
Popovic, Z.23
Havranek, J.J.24
Karanicolas, J.25
Das, R.26
Meiler, J.27
Kortemme, T.28
Gray, J.J.29
Kuhlman, B.30
Baker, D.31
Bradley, P.32
more..
-
41
-
-
0037406075
-
Cyclic coordinate descent: A robotics algorithm for protein loop closure
-
A.A. Canutescu, and R.L. Dunbrack Jr. Cyclic coordinate descent: a robotics algorithm for protein loop closure Protein Sci. 12 2003 963 972
-
(2003)
Protein Sci.
, vol.12
, pp. 963-972
-
-
Canutescu, A.A.1
Dunbrack, R.L.2
-
42
-
-
68349104348
-
Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling
-
D.J. Mandell, E.A. Coutsias, and T. Kortemme Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling Nat. Methods 6 2009 551 552
-
(2009)
Nat. Methods
, vol.6
, pp. 551-552
-
-
Mandell, D.J.1
Coutsias, E.A.2
Kortemme, T.3
-
43
-
-
80755125384
-
Predicting antibody complementarity determining region structures without classification
-
Y. Choi, and C.M. Deane Predicting antibody complementarity determining region structures without classification Mol. Biosyst. 7 2011 3327 3334
-
(2011)
Mol. Biosyst.
, vol.7
, pp. 3327-3334
-
-
Choi, Y.1
Deane, C.M.2
-
45
-
-
0032536197
-
Conformations of the third hypervariable region in the VH domain of immunoglobulins
-
V. Morea, A. Tramontano, M. Rustici, C. Chothia, and A.M. Lesk Conformations of the third hypervariable region in the VH domain of immunoglobulins J. Mol. Biol. 275 1998 269 294
-
(1998)
J. Mol. Biol.
, vol.275
, pp. 269-294
-
-
Morea, V.1
Tramontano, A.2
Rustici, M.3
Chothia, C.4
Lesk, A.M.5
-
46
-
-
0030577371
-
Structural classification of CDR-H3 in antibodies
-
H. Shirai, A. Kidera, and H. Nakamura Structural classification of CDR-H3 in antibodies FEBS Lett. 399 1996 1 8
-
(1996)
FEBS Lett.
, vol.399
, pp. 1-8
-
-
Shirai, H.1
Kidera, A.2
Nakamura, H.3
-
47
-
-
0033058759
-
H3-rules: Identification of CDR-H3 structures in antibodies
-
H. Shirai, A. Kidera, and H. Nakamura H3-rules: identification of CDR-H3 structures in antibodies FEBS Lett. 455 1999 188 197
-
(1999)
FEBS Lett.
, vol.455
, pp. 188-197
-
-
Shirai, H.1
Kidera, A.2
Nakamura, H.3
-
48
-
-
0344642583
-
Enhanced conformational diversity search of CDR-H3 in antibodies: Role of the first CDR-H3 residue
-
S.T. Kim, H. Shirai, N. Nakajima, J. Higo, and H. Nakamura Enhanced conformational diversity search of CDR-H3 in antibodies: role of the first CDR-H3 residue Proteins 37 1999 683 696
-
(1999)
Proteins
, vol.37
, pp. 683-696
-
-
Kim, S.T.1
Shirai, H.2
Nakajima, N.3
Higo, J.4
Nakamura, H.5
-
49
-
-
84868584302
-
A systematic comparison of free and bound antibodies reveals binding-related conformational changes
-
I. Sela-Culang, S. Alon, and Y. Ofran A systematic comparison of free and bound antibodies reveals binding-related conformational changes J. Immunol. 189 2012 4890 4899
-
(2012)
J. Immunol.
, vol.189
, pp. 4890-4899
-
-
Sela-Culang, I.1
Alon, S.2
Ofran, Y.3
-
50
-
-
33748988479
-
Long loop prediction using the protein local optimization program
-
K. Zhu, D.L. Pincus, S. Zhao, and R.A. Friesner Long loop prediction using the protein local optimization program Proteins 65 2006 438 452
-
(2006)
Proteins
, vol.65
, pp. 438-452
-
-
Zhu, K.1
Pincus, D.L.2
Zhao, S.3
Friesner, R.A.4
-
51
-
-
84907896633
-
High-resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations
-
H. Shirai High-resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations The Annual Meeting of the Antibody Society, Huntington Beach, CA December 8-12, 2013
-
(2013)
The Annual Meeting of the Antibody Society, Huntington Beach, CA
-
-
Shirai, H.1
-
52
-
-
77956016509
-
Analysis and prediction of VH/VL packing in antibodies
-
K.R. Abhinandan, and A.C. Martin Analysis and prediction of VH/VL packing in antibodies Protein Eng. Des. Sel. 23 2010 689 697
-
(2010)
Protein Eng. Des. Sel.
, vol.23
, pp. 689-697
-
-
Abhinandan, K.R.1
Martin, A.C.2
-
53
-
-
79961022281
-
The association of heavy and light chain variable domains in antibodies: Implications for antigen specificity
-
A. Chailyan, P. Marcatili, and A. Tramontano The association of heavy and light chain variable domains in antibodies: implications for antigen specificity FEBS J. 278 2011 2858 2866
-
(2011)
FEBS J.
, vol.278
, pp. 2858-2866
-
-
Chailyan, A.1
Marcatili, P.2
Tramontano, A.3
-
55
-
-
84891789990
-
The 2014 Nucleic Acids Research Database Issue and an updated NAR online Molecular Biology Database Collection
-
X.M. Fernandez-Suarez, D.J. Rigden, and M.Y. Galperin The 2014 Nucleic Acids Research Database Issue and an updated NAR online Molecular Biology Database Collection Nucleic Acids Res. 42 2014 D1 D6
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 1-D6
-
-
Fernandez-Suarez, X.M.1
Rigden, D.J.2
Galperin, M.Y.3
-
56
-
-
75549084463
-
The immune epitope database 2.0
-
R. Vita, L. Zarebski, J.A. Greenbaum, H. Emami, I. Hoof, N. Salimi, R. Damle, A. Sette, and B. Peters The immune epitope database 2.0 Nucleic Acids Res. 38 2010 D854 D862
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 854-D862
-
-
Vita, R.1
Zarebski, L.2
Greenbaum, J.A.3
Emami, H.4
Hoof, I.5
Salimi, N.6
Damle, R.7
Sette, A.8
Peters, B.9
-
57
-
-
84859572771
-
A database of immunoglobulins with integrated tools: DIGIT
-
A. Chailyan, A. Tramontano, and P. Marcatili A database of immunoglobulins with integrated tools: DIGIT Nucleic Acids Res. 40 2012 D1230 D1234
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 1230-D1234
-
-
Chailyan, A.1
Tramontano, A.2
Marcatili, P.3
-
58
-
-
84878082007
-
Igs expressed by chronic lymphocytic leukemia B cells show limited binding-site structure variability
-
P. Marcatili, F. Ghiotto, C. Tenca, A. Chailyan, A.N. Mazzarello, X.J. Yan, M. Colombo, E. Albesiano, D. Bagnara, G. Cutrona, F. Morabito, S. Bruno, M. Ferrarini, N. Chiorazzi, A. Tramontano, and F. Fais Igs expressed by chronic lymphocytic leukemia B cells show limited binding-site structure variability J. Immunol. 190 2013 5771 5778
-
(2013)
J. Immunol.
, vol.190
, pp. 5771-5778
-
-
Marcatili, P.1
Ghiotto, F.2
Tenca, C.3
Chailyan, A.4
Mazzarello, A.N.5
Yan, X.J.6
Colombo, M.7
Albesiano, E.8
Bagnara, D.9
Cutrona, G.10
Morabito, F.11
Bruno, S.12
Ferrarini, M.13
Chiorazzi, N.14
Tramontano, A.15
Fais, F.16
-
59
-
-
82855172234
-
Mutation pattern of paired immunoglobulin heavy and light variable domains in chronic lymphocytic leukemia B cells
-
F. Ghiotto, P. Marcatili, C. Tenca, M.G. Calevo, X.J. Yan, E. Albesiano, D. Bagnara, M. Colombo, G. Cutrona, C.C. Chu, F. Morabito, S. Bruno, M. Ferrarini, A. Tramontano, F. Fais, and N. Chiorazzi Mutation pattern of paired immunoglobulin heavy and light variable domains in chronic lymphocytic leukemia B cells Mol. Med. 17 2011 1188 1195
-
(2011)
Mol. Med.
, vol.17
, pp. 1188-1195
-
-
Ghiotto, F.1
Marcatili, P.2
Tenca, C.3
Calevo, M.G.4
Yan, X.J.5
Albesiano, E.6
Bagnara, D.7
Colombo, M.8
Cutrona, G.9
Chu, C.C.10
Morabito, F.11
Bruno, S.12
Ferrarini, M.13
Tramontano, A.14
Fais, F.15
Chiorazzi, N.16
-
60
-
-
77957776534
-
Stereotyped patterns of B-cell receptor in splenic marginal zone lymphoma
-
S. Zibellini, D. Capello, F. Forconi, P. Marcatili, D. Rossi, S. Rattotti, S. Franceschetti, E. Sozzi, E. Cencini, R. Marasca, L. Baldini, A. Tucci, F. Bertoni, F. Passamonti, E. Orlandi, M. Varettoni, M. Merli, S. Rizzi, V. Gattei, A. Tramontano, M. Paulli, G. Gaidano, and L. Arcaini Stereotyped patterns of B-cell receptor in splenic marginal zone lymphoma Haematologica 95 2010 1792 1796
-
(2010)
Haematologica
, vol.95
, pp. 1792-1796
-
-
Zibellini, S.1
Capello, D.2
Forconi, F.3
Marcatili, P.4
Rossi, D.5
Rattotti, S.6
Franceschetti, S.7
Sozzi, E.8
Cencini, E.9
Marasca, R.10
Baldini, L.11
Tucci, A.12
Bertoni, F.13
Passamonti, F.14
Orlandi, E.15
Varettoni, M.16
Merli, M.17
Rizzi, S.18
Gattei, V.19
Tramontano, A.20
Paulli, M.21
Gaidano, G.22
Arcaini, L.23
more..
-
61
-
-
84862192766
-
ChEMBL: A large-scale bioactivity database for drug discovery
-
A. Gaulton, L.J. Bellis, A.P. Bento, J. Chambers, M. Davies, A. Hersey, Y. Light, S. Mcglinchey, D. Michalovich, B. Al-Lazikani, and J.P. Overington ChEMBL: a large-scale bioactivity database for drug discovery Nucleic Acids Res. 40 2012 D1100 D1107
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 1100-D1107
-
-
Gaulton, A.1
Bellis, L.J.2
Bento, A.P.3
Chambers, J.4
Davies, M.5
Hersey, A.6
Light, Y.7
McGlinchey, S.8
Michalovich, D.9
Al-Lazikani, B.10
Overington, J.P.11
-
62
-
-
84891762026
-
The ChEMBL bioactivity database: An update
-
A.P. Bento, A. Gaulton, A. Hersey, L.J. Bellis, J. Chambers, M. Davies, F.A. Kruger, Y. Light, L. Mak, S. McGlinchey, M. Nowotka, G. Papadatos, R. Santos, and J.P. Overington The ChEMBL bioactivity database: an update Nucleic Acids Res. 42 2014 D1083 D1090
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 1083-D1090
-
-
Bento, A.P.1
Gaulton, A.2
Hersey, A.3
Bellis, L.J.4
Chambers, J.5
Davies, M.6
Kruger, F.A.7
Light, Y.8
Mak, L.9
McGlinchey, S.10
Nowotka, M.11
Papadatos, G.12
Santos, R.13
Overington, J.P.14
-
63
-
-
80053361809
-
Collation and data-mining of literature bioactivity data for drug discovery
-
L.J. Bellis, R. Akhtar, B. Al-Lazikani, F. Atkinson, A.P. Bento, J. Chambers, M. Davies, A. Gaulton, A. Hersey, K. Ikeda, F.A. Krüger, Y. Light, S. McGlinchey, R. Santos, B. Stauch, and J.P. Overington Collation and data-mining of literature bioactivity data for drug discovery Biochem. Soc. Trans. 39 2011 1365 1370
-
(2011)
Biochem. Soc. Trans.
, vol.39
, pp. 1365-1370
-
-
Bellis, L.J.1
Akhtar, R.2
Al-Lazikani, B.3
Atkinson, F.4
Bento, A.P.5
Chambers, J.6
Davies, M.7
Gaulton, A.8
Hersey, A.9
Ikeda, K.10
Krüger, F.A.11
Light, Y.12
McGlinchey, S.13
Santos, R.14
Stauch, B.15
Overington, J.P.16
-
65
-
-
78651287426
-
DrugBank 3.0: A comprehensive resource for 'omics' research on drugs
-
C. Knox, V. Law, T. Jewison, P. Liu, S. Ly, A. Frolkis, A. Pon, K. Banco, C. Mak, V. Neveu, Y. Djoumbou, R. Eisner, A.C. Guo, and D.S. Wishart DrugBank 3.0: a comprehensive resource for 'omics' research on drugs Nucleic Acids Res. 39 2011 D1035 D1041
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 1035-D1041
-
-
Knox, C.1
Law, V.2
Jewison, T.3
Liu, P.4
Ly, S.5
Frolkis, A.6
Pon, A.7
Banco, K.8
Mak, C.9
Neveu, V.10
Djoumbou, Y.11
Eisner, R.12
Guo, A.C.13
Wishart, D.S.14
-
68
-
-
58549092240
-
The neuroscience information framework: A data and knowledge environment for neuroscience
-
D. Gardner, H. Akil, G.A. Ascoli, D.M. Bowden, W. Bug, D.E. Donohue, D.H. Goldberg, B. Grafstein, J.S. Grethe, A. Gupta, M. Halavi, D.N. Kennedy, L. Marenco, M.E. Martone, P.L. Miller, H.M. Muller, A. Robert, G.M. Shepherd, P.W. Sternberg, D.C. Van Essen, and R.W. Williams The neuroscience information framework: a data and knowledge environment for neuroscience Neuroinformatics 6 2008 149 160
-
(2008)
Neuroinformatics
, vol.6
, pp. 149-160
-
-
Gardner, D.1
Akil, H.2
Ascoli, G.A.3
Bowden, D.M.4
Bug, W.5
Donohue, D.E.6
Goldberg, D.H.7
Grafstein, B.8
Grethe, J.S.9
Gupta, A.10
Halavi, M.11
Kennedy, D.N.12
Marenco, L.13
Martone, M.E.14
Miller, P.L.15
Muller, H.M.16
Robert, A.17
Shepherd, G.M.18
Sternberg, P.W.19
Van Essen, D.C.20
Williams, R.W.21
more..
-
69
-
-
84907885048
-
-
http://antibodyregistry.org
-
-
-
-
70
-
-
33744530734
-
AbMiner: A bioinformatic resource on available monoclonal antibodies and corresponding gene identifiers for genomic, proteomic, and immunologic studies
-
S.M. Major, S. Nishizuka, D. Morita, R. Rowland, M. Sunshine, U. Shankavaram, F. Washburn, D. Asin, H. Kouros-Mehr, D. Kane, and J.N. Weinstein AbMiner: a bioinformatic resource on available monoclonal antibodies and corresponding gene identifiers for genomic, proteomic, and immunologic studies BMC Bioinformatics 7 2006 192
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 192
-
-
Major, S.M.1
Nishizuka, S.2
Morita, D.3
Rowland, R.4
Sunshine, M.5
Shankavaram, U.6
Washburn, F.7
Asin, D.8
Kouros-Mehr, H.9
Kane, D.10
Weinstein, J.N.11
-
71
-
-
84907890867
-
-
http://www.antibodypedia.com
-
-
-
-
72
-
-
84907890866
-
-
https://www.phe-culturecollections.org.uk/products/celllines/hybridoma/search.jsp
-
-
-
-
73
-
-
84907896632
-
-
http://www.gallartinternet.com/mai/index.htm
-
-
-
-
74
-
-
84907885047
-
-
http://www.imgt.org
-
-
-
-
75
-
-
58149316094
-
IMGT, the international ImMunoGeneTics information system
-
M.-P. Lefranc, V. Giudicelli, C. Ginestoux, J. Jabado-Michaloud, G. Folch, F. Bellahcene, Y. Wu, E. Gemrot, X. Brochet, J. Lane, L. Regnier, F. Ehrenmann, G. Lefranc, and P. Duroux IMGT, the international ImMunoGeneTics information system Nucleic Acids Res. 37 2009 D1006 D1012
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1006-D1012
-
-
Lefranc, M.-P.1
Giudicelli, V.2
Ginestoux, C.3
Jabado-Michaloud, J.4
Folch, G.5
Bellahcene, F.6
Wu, Y.7
Gemrot, E.8
Brochet, X.9
Lane, J.10
Regnier, L.11
Ehrenmann, F.12
Lefranc, G.13
Duroux, P.14
-
76
-
-
84895541683
-
Immunoglobulin (IG) and T cell receptor genes (TR): IMGT® and the birth and rise of immunoinformatics
-
M.-P. Lefranc Immunoglobulin (IG) and T cell receptor genes (TR): IMGT® and the birth and rise of immunoinformatics Front. Immunol. 5 2014 22
-
(2014)
Front. Immunol.
, vol.5
, pp. 22
-
-
Lefranc, M.-P.1
-
77
-
-
84867825709
-
IMGT-ONTOLOGY
-
O.W.W. Dubitzky, K.-H. Cho, H. Yokota, Springer Science + Business Media, LLC012 New York
-
V. Giudicelli, and M.-P. Lefranc IMGT-ONTOLOGY O.W.W. Dubitzky, K.-H. Cho, H. Yokota, Encyclopedia of Systems Biology 2013 Springer Science + Business Media, LLC012 New York 964 972
-
(2013)
Encyclopedia of Systems Biology
, pp. 964-972
-
-
Giudicelli, V.1
Lefranc, M.-P.2
-
78
-
-
84946062567
-
Antibody informatics: IMGT®, the international ImMunoGeneTics information system®
-
(AID-0001)
-
M.-P. Lefranc Antibody informatics: IMGT®, the international ImMunoGeneTics information system® Microbiol. Spectr. 2 2 2014 (AID-0001)
-
(2014)
Microbiol. Spectr.
, vol.2
, Issue.2
-
-
Lefranc, M.-P.1
-
79
-
-
0004032583
-
-
4th ed. U. S. Govt. Bethesda, MD Printing Off. No. 165-492
-
E.A. Kabat, T.T. Wu, M. Reid-Miller, H. Perry, and K. Gottesman Sequences of Proteins of Immunological Interest 4th ed. 1987 U. S. Govt. Bethesda, MD Printing Off. No. 165-492
-
(1987)
Sequences of Proteins of Immunological Interest
-
-
Kabat, E.A.1
Wu, T.T.2
Reid-Miller, M.3
Perry, H.4
Gottesman, K.5
-
80
-
-
0004032583
-
-
5th ed. NIH Publication Bethesda, MD No. 91-3242
-
E.A. Kabat, T.T. Wu, H. Perry, K. Gottesman, and C. Foeller Sequences of Proteins of Immunological Interest 5th ed. 1991 NIH Publication Bethesda, MD No. 91-3242
-
(1991)
Sequences of Proteins of Immunological Interest
-
-
Kabat, E.A.1
Wu, T.T.2
Perry, H.3
Gottesman, K.4
Foeller, C.5
-
81
-
-
48049124972
-
Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains
-
K.R. Abhinandan, and A.C. Martin Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains Mol. Immunol. 45 2008 3832 3839
-
(2008)
Mol. Immunol.
, vol.45
, pp. 3832-3839
-
-
Abhinandan, K.R.1
Martin, A.C.2
-
82
-
-
0035827172
-
Yet another numbering scheme for immunoglobulin variable domains: An automatic modeling and analysis tool
-
A. Honegger, and A. Plückthun Yet another numbering scheme for immunoglobulin variable domains: an automatic modeling and analysis tool J. Mol. Biol. 309 2001 657 670
-
(2001)
J. Mol. Biol.
, vol.309
, pp. 657-670
-
-
Honegger, A.1
Plückthun, A.2
-
83
-
-
0343307090
-
Unique database numbering system for immunogenetic analysis
-
M.-P. Lefranc Unique database numbering system for immunogenetic analysis Immunol. Today 18 1997 509
-
(1997)
Immunol. Today
, vol.18
, pp. 509
-
-
Lefranc, M.-P.1
-
84
-
-
84907885046
-
-
http://www.imgt.org/IMGTrepertoire/2D-3Dstruct/2D-representations/mouse/IG/E5.2Fv/ighVD-J-E5-2Fv.html
-
-
-
-
85
-
-
0032824862
-
The IMGT unique numbering for Immunoglobulins, T cell receptors and Ig-like domains
-
M.-P. Lefranc The IMGT unique numbering for Immunoglobulins, T cell receptors and Ig-like domains The Immunologist 7 1999 132 136
-
(1999)
The Immunologist
, vol.7
, pp. 132-136
-
-
Lefranc, M.-P.1
-
86
-
-
0037212339
-
IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains
-
M.-P. Lefranc, C. Pommie, M. Ruiz, V. Giudicelli, E. Foulquier, L. Truong, V. Thouvenin-Contet, and G. Lefranc IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains Dev. Comp. Immunol. 27 2003 55 77
-
(2003)
Dev. Comp. Immunol.
, vol.27
, pp. 55-77
-
-
Lefranc, M.-P.1
Pommie, C.2
Ruiz, M.3
Giudicelli, V.4
Foulquier, E.5
Truong, L.6
Thouvenin-Contet, V.7
Lefranc, G.8
-
87
-
-
0023053742
-
Phosphocholine binding immunoglobulin Fab McPC603. An X-ray diffraction study at 2.7 Å
-
Y. Satow, G.H. Cohen, E.A. Padlan, and D.R. Davies Phosphocholine binding immunoglobulin Fab McPC603. An X-ray diffraction study at 2.7 Å J. Mol. Biol. 190 1986 593 604
-
(1986)
J. Mol. Biol.
, vol.190
, pp. 593-604
-
-
Satow, Y.1
Cohen, G.H.2
Padlan, E.A.3
Davies, D.R.4
-
88
-
-
84907896631
-
-
http://www.imgt.org/IMGTScientificChart/Numbering/IMGTcorrespondence.html
-
-
-
-
89
-
-
78651406195
-
Antibody nomenclature: From IMGT-ONTOLOGY to INN definition
-
M.-P. Lefranc Antibody nomenclature: from IMGT-ONTOLOGY to INN definition MAbs 3 2011 1 2
-
(2011)
MAbs
, vol.3
, pp. 1-2
-
-
Lefranc, M.-P.1
-
90
-
-
9644255622
-
IMGT unique numbering for immunoglobulin and T cell receptor constant domains and Ig superfamily C-like domains
-
M.-P. Lefranc, C. Pommie, Q. Kaas, E. Duprat, N. Bosc, D. Guiraudou, C. Jean, M. Ruiz, I. Da Piedade, M. Rouard, E. Foulquier, V. Thouvenin, and G. Lefranc IMGT unique numbering for immunoglobulin and T cell receptor constant domains and Ig superfamily C-like domains Dev. Comp. Immunol. 29 2005 185 203
-
(2005)
Dev. Comp. Immunol.
, vol.29
, pp. 185-203
-
-
Lefranc, M.-P.1
Pommie, C.2
Kaas, Q.3
Duprat, E.4
Bosc, N.5
Guiraudou, D.6
Jean, C.7
Ruiz, M.8
Da Piedade, I.9
Rouard, M.10
Foulquier, E.11
Thouvenin, V.12
Lefranc, G.13
-
91
-
-
79958033481
-
IMGT unique numbering for the variable (V), constant (C), and groove (G) domains of IG, TR, MH, IgSF, and MhSF
-
M.-P. Lefranc IMGT unique numbering for the variable (V), constant (C), and groove (G) domains of IG, TR, MH, IgSF, and MhSF Cold Spring Harb. Protoc. 2011 2011 633 642
-
(2011)
Cold Spring Harb. Protoc.
, vol.2011
, pp. 633-642
-
-
Lefranc, M.-P.1
-
94
-
-
0033493024
-
Ontology for immunogenetics: The IMGT-ONTOLOGY
-
V. Giudicelli, and M.-P. Lefranc Ontology for immunogenetics: the IMGT-ONTOLOGY Bioinformatics 15 1999 1047 1054
-
(1999)
Bioinformatics
, vol.15
, pp. 1047-1054
-
-
Giudicelli, V.1
Lefranc, M.-P.2
-
96
-
-
79958055455
-
From IMGT-ONTOLOGY IDENTIFICATION axiom to IMGT standardized keywords: For immunoglobulins (IG), T cell receptors (TR), and conventional genes
-
M.-P. Lefranc From IMGT-ONTOLOGY IDENTIFICATION axiom to IMGT standardized keywords: for immunoglobulins (IG), T cell receptors (TR), and conventional genes Cold Spring Harb. Protoc. 2011 2011 604 613
-
(2011)
Cold Spring Harb. Protoc.
, vol.2011
, pp. 604-613
-
-
Lefranc, M.-P.1
-
97
-
-
79958028552
-
From IMGT-ONTOLOGY DESCRIPTION axiom to IMGT standardized labels: For immunoglobulin (IG) and T cell receptor (TR) sequences and structures
-
M.-P. Lefranc From IMGT-ONTOLOGY DESCRIPTION axiom to IMGT standardized labels: for immunoglobulin (IG) and T cell receptor (TR) sequences and structures Cold Spring Harb. Protoc. 2011 2011 614 626
-
(2011)
Cold Spring Harb. Protoc.
, vol.2011
, pp. 614-626
-
-
Lefranc, M.-P.1
-
98
-
-
79958075726
-
From IMGT-ONTOLOGY CLASSIFICATION axiom to IMGT standardized gene and allele nomenclature: For immunoglobulins (IG) and T cell receptors (TR)
-
M.-P. Lefranc From IMGT-ONTOLOGY CLASSIFICATION axiom to IMGT standardized gene and allele nomenclature: for immunoglobulins (IG) and T cell receptors (TR) Cold Spring Harb. Protoc. 2011 2011 627 632
-
(2011)
Cold Spring Harb. Protoc.
, vol.2011
, pp. 627-632
-
-
Lefranc, M.-P.1
-
99
-
-
79958044933
-
IMGT Collier de Perles for the variable (V), constant (C), and groove (G) domains of IG, TR, MH, IgSF, and MhSF
-
M.-P. Lefranc IMGT Collier de Perles for the variable (V), constant (C), and groove (G) domains of IG, TR, MH, IgSF, and MhSF Cold Spring Harb. Protoc. 2011 2011 643 651
-
(2011)
Cold Spring Harb. Protoc.
, vol.2011
, pp. 643-651
-
-
Lefranc, M.-P.1
-
100
-
-
0036200078
-
IMGT gene identification and Colliers de Perles of human immunoglobulins with known 3D structures
-
M. Ruiz, and M.-P. Lefranc IMGT gene identification and Colliers de Perles of human immunoglobulins with known 3D structures Immunogenetics 53 2002 857 883
-
(2002)
Immunogenetics
, vol.53
, pp. 857-883
-
-
Ruiz, M.1
Lefranc, M.-P.2
-
101
-
-
84867834056
-
IMGT/HighV-QUEST: The IMGT® web portal for immunoglobulin (IG) or antibody and T cell receptor (TR) analysis from NGS high throughput and deep sequencing
-
E. Alamyar, V. Giudicelli, L. Shuo, P. Duroux, and M.-P. Lefranc IMGT/HighV-QUEST: the IMGT® web portal for immunoglobulin (IG) or antibody and T cell receptor (TR) analysis from NGS high throughput and deep sequencing Immunome Res. 8 1 2012 26
-
(2012)
Immunome Res.
, vol.8
, Issue.1
, pp. 26
-
-
Alamyar, E.1
Giudicelli, V.2
Shuo, L.3
Duroux, P.4
Lefranc, M.-P.5
-
102
-
-
84884165599
-
IMGT/HighV QUEST paradigm for T cell receptor IMGT clonotype diversity and next generation repertoire immunoprofiling
-
S. Li, M.-P. Lefranc, J.J. Miles, E. Alamyar, V. Giudicelli, P. Duroux, J.D. Freeman, V.D. Corbin, J.P. Scheerlinck, M.A. Frohman, P.U. Cameron, M. Plebanski, B. Loveland, S.R. Burrows, A.T. Papenfuss, and E.J. Gowans IMGT/HighV QUEST paradigm for T cell receptor IMGT clonotype diversity and next generation repertoire immunoprofiling Nat. Commun. 4 2013 2333
-
(2013)
Nat. Commun.
, vol.4
, pp. 2333
-
-
Li, S.1
Lefranc, M.-P.2
Miles, J.J.3
Alamyar, E.4
Giudicelli, V.5
Duroux, P.6
Freeman, J.D.7
Corbin, V.D.8
Scheerlinck, J.P.9
Frohman, M.A.10
Cameron, P.U.11
Plebanski, M.12
Loveland, B.13
Burrows, S.R.14
Papenfuss, A.T.15
Gowans, E.J.16
-
103
-
-
3242876679
-
IMGT/V-QUEST, an integrated software program for immunoglobulin and T cell receptor V-J and V-D-J rearrangement analysis
-
V. Giudicelli, D. Chaume, and M.-P. Lefranc IMGT/V-QUEST, an integrated software program for immunoglobulin and T cell receptor V-J and V-D-J rearrangement analysis Nucleic Acids Res. 32 2004 W435 W440
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 435-W440
-
-
Giudicelli, V.1
Chaume, D.2
Lefranc, M.-P.3
-
104
-
-
84867350002
-
IMGT((R)) tools for the nucleotide analysis of immunoglobulin (IG) and T cell receptor (TR) V-(D)-J repertoires, polymorphisms, and IG mutations: IMGT/V-QUEST and IMGT/HighV-QUEST for NGS
-
E. Alamyar, P. Duroux, M.-P. Lefranc, and V. Giudicelli IMGT((R)) tools for the nucleotide analysis of immunoglobulin (IG) and T cell receptor (TR) V-(D)-J repertoires, polymorphisms, and IG mutations: IMGT/V-QUEST and IMGT/HighV-QUEST for NGS Methods Mol. Biol. 882 2012 569 604
-
(2012)
Methods Mol. Biol.
, vol.882
, pp. 569-604
-
-
Alamyar, E.1
Duroux, P.2
Lefranc, M.-P.3
Giudicelli, V.4
-
105
-
-
9644277298
-
IMGT/JunctionAnalysis: The first tool for the analysis of the immunoglobulin and T cell receptor complex V-J and V-D-J junctions
-
M. Yousfi Monod, V. Giudicelli, D. Chaume, and M.-P. Lefranc IMGT/JunctionAnalysis: the first tool for the analysis of the immunoglobulin and T cell receptor complex V-J and V-D-J junctions Bioinformatics 20 Suppl. 1 2004 i379 i385
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
, pp. 379-i385
-
-
Yousfi Monod, M.1
Giudicelli, V.2
Chaume, D.3
Lefranc, M.-P.4
-
106
-
-
79958026088
-
IMGT/JunctionAnalysis: IMGT standardized analysis of the V-J and V-D-J junctions of the rearranged immunoglobulins (IG) and T cell receptors (TR)
-
V. Giudicelli, and M.-P. Lefranc IMGT/JunctionAnalysis: IMGT standardized analysis of the V-J and V-D-J junctions of the rearranged immunoglobulins (IG) and T cell receptors (TR) Cold Spring Harb. Protoc. 2011 2011 716 725
-
(2011)
Cold Spring Harb. Protoc.
, vol.2011
, pp. 716-725
-
-
Giudicelli, V.1
Lefranc, M.-P.2
-
107
-
-
79958045790
-
IMGT/Collier de Perles: IMGT standardized representation of domains (IG, TR, and IgSF variable and constant domains, MH and MhSF groove domains)
-
F. Ehrenmann, V. Giudicelli, P. Duroux, and M.-P. Lefranc IMGT/Collier de Perles: IMGT standardized representation of domains (IG, TR, and IgSF variable and constant domains, MH and MhSF groove domains) Cold Spring Harb. Protoc. 2011 2011 726 736
-
(2011)
Cold Spring Harb. Protoc.
, vol.2011
, pp. 726-736
-
-
Ehrenmann, F.1
Giudicelli, V.2
Duroux, P.3
Lefranc, M.-P.4
-
108
-
-
79958042285
-
IMGT/DomainGapAlign: IMGT standardized analysis of amino acid sequences of variable, constant, and groove domains (IG, TR, MH, IgSF, MhSF)
-
F. Ehrenmann, and M.-P. Lefranc IMGT/DomainGapAlign: IMGT standardized analysis of amino acid sequences of variable, constant, and groove domains (IG, TR, MH, IgSF, MhSF) Cold Spring Harb. Protoc. 2011 2011 737 749
-
(2011)
Cold Spring Harb. Protoc.
, vol.2011
, pp. 737-749
-
-
Ehrenmann, F.1
Lefranc, M.-P.2
-
109
-
-
84867370412
-
IMGT/DomainGapAlign: The IMGT® tool for the analysis of IG, TR, MH, IgSF, and MhSF domain amino acid polymorphism
-
F. Ehrenmann, and M.-P. Lefranc IMGT/DomainGapAlign: the IMGT® tool for the analysis of IG, TR, MH, IgSF, and MhSF domain amino acid polymorphism Methods Mol. Biol. 882 2012 605 633
-
(2012)
Methods Mol. Biol.
, vol.882
, pp. 605-633
-
-
Ehrenmann, F.1
Lefranc, M.-P.2
-
110
-
-
75549091258
-
IMGT/3Dstructure-DB and IMGT/DomainGapAlign: A database and a tool for immunoglobulins or antibodies, T cell receptors, MHC, IgSF and MhcSF
-
F. Ehrenmann, Q. Kaas, and M.-P. Lefranc IMGT/3Dstructure-DB and IMGT/DomainGapAlign: a database and a tool for immunoglobulins or antibodies, T cell receptors, MHC, IgSF and MhcSF Nucleic Acids Res. 38 2010 D301 D307
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 301-D307
-
-
Ehrenmann, F.1
Kaas, Q.2
Lefranc, M.-P.3
-
111
-
-
79958045184
-
IMGT/3Dstructure-DB: Querying the IMGT database for 3D structures in immunology and immunoinformatics (IG or antibodies, TR, MH, RPI, and FPIA)
-
F. Ehrenmann, and M.-P. Lefranc IMGT/3Dstructure-DB: querying the IMGT database for 3D structures in immunology and immunoinformatics (IG or antibodies, TR, MH, RPI, and FPIA) Cold Spring Harb. Protoc. 2011 2011 750 761
-
(2011)
Cold Spring Harb. Protoc.
, vol.2011
, pp. 750-761
-
-
Ehrenmann, F.1
Lefranc, M.-P.2
-
112
-
-
1242276733
-
IMGT standardized criteria for statistical analysis of immunoglobulin V-REGION amino acid properties
-
C. Pommie, S. Levadoux, R. Sabatier, G. Lefranc, and M.-P. Lefranc IMGT standardized criteria for statistical analysis of immunoglobulin V-REGION amino acid properties J. Mol. Recognit. 17 2004 17 32
-
(2004)
J. Mol. Recognit.
, vol.17
, pp. 17-32
-
-
Pommie, C.1
Levadoux, S.2
Sabatier, R.3
Lefranc, G.4
Lefranc, M.-P.5
-
113
-
-
33644874839
-
IMGT/LIGM-DB, the IMGT comprehensive database of immunoglobulin and T cell receptor nucleotide sequences
-
V. Giudicelli, P. Duroux, C. Ginestoux, G. Folch, J. Jabado-Michaloud, D. Chaume, and M.-P. Lefranc IMGT/LIGM-DB, the IMGT comprehensive database of immunoglobulin and T cell receptor nucleotide sequences Nucleic Acids Res. 34 2006 D781 D784
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 781-D784
-
-
Giudicelli, V.1
Duroux, P.2
Ginestoux, C.3
Folch, G.4
Jabado-Michaloud, J.5
Chaume, D.6
Lefranc, M.-P.7
-
114
-
-
13444273444
-
IMGT/GENE-DB: A comprehensive database for human and mouse immunoglobulin and T cell receptor genes
-
V. Giudicelli, D. Chaume, and M.-P. Lefranc IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes Nucleic Acids Res. 33 2005 D256 D261
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 256-D261
-
-
Giudicelli, V.1
Chaume, D.2
Lefranc, M.-P.3
-
115
-
-
84954215937
-
IMGT/mAb-DB: The IMGT® database for therapeutic monoclonal antibodies
-
C. Poiron, Y. Wu, C. Ginestoux, F. Ehrenmann, P. Duroux, and M.-P. Lefranc IMGT/mAb-DB: the IMGT® database for therapeutic monoclonal antibodies 11èmes Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM], Montpellier, 7-9 September 2010 2010
-
(2010)
11èmes Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM], Montpellier, 7-9 September 2010
-
-
Poiron, C.1
Wu, Y.2
Ginestoux, C.3
Ehrenmann, F.4
Duroux, P.5
Lefranc, M.-P.6
-
116
-
-
84866696938
-
Human Gm, Km, and Am allotypes and their molecular characterization: A remarkable demonstration of polymorphism
-
M.-P. Lefranc, and G. Lefranc Human Gm, Km, and Am allotypes and their molecular characterization: a remarkable demonstration of polymorphism Methods Mol. Biol. 882 2012 635 680
-
(2012)
Methods Mol. Biol.
, vol.882
, pp. 635-680
-
-
Lefranc, M.-P.1
Lefranc, G.2
-
117
-
-
84866710679
-
Mass spectrometry detection of G3m and IGHG3 alleles and follow-up of differential mother and neonate IgG3
-
C. Dechavanne, F. Guillonneau, G. Chiappetta, L. Sago, P. Levy, V. Salnot, E. Guitard, F. Ehrenmann, C. Broussard, P. Chafey, A. Le Port, J. Vinh, P. Mayeux, J.M. Dugoujon, M.-P. Lefranc, and F. Migot-Nabias Mass spectrometry detection of G3m and IGHG3 alleles and follow-up of differential mother and neonate IgG3 PLoS One 7 2012 e46097
-
(2012)
PLoS One
, vol.7
, pp. 46097
-
-
Dechavanne, C.1
Guillonneau, F.2
Chiappetta, G.3
Sago, L.4
Levy, P.5
Salnot, V.6
Guitard, E.7
Ehrenmann, F.8
Broussard, C.9
Chafey, P.10
Le Port, A.11
Vinh, J.12
Mayeux, P.13
Dugoujon, J.M.14
Lefranc, M.-P.15
Migot-Nabias, F.16
-
118
-
-
79958062905
-
Antibody databases and tools: The IMGT® experience
-
Zhiqiang An, John Wiley & Sons, Inc. (chap. 4)
-
M.-P. Lefranc Antibody databases and tools: the IMGT® experience Zhiqiang An, Therapeutic Monoclonal Antibodies: From Bench to Clinic 2009 John Wiley & Sons, Inc. 91 114 (chap. 4)
-
(2009)
Therapeutic Monoclonal Antibodies: From Bench to Clinic
, pp. 91-114
-
-
Lefranc, M.-P.1
-
119
-
-
79958045911
-
Standardized sequence and structure analysis of antibody using IMGT®
-
R. Kontermann, S. Dübel, Springer-Verlab Berlin Heidelberg (chap. 2)
-
F. Ehrenmann, P. Duroux, V. Giudicelli, and M.-P. Lefranc Standardized sequence and structure analysis of antibody using IMGT® R. Kontermann, S. Dübel, Antibody Engineering vol. 2 2010 Springer-Verlab Berlin Heidelberg 11 31 (chap. 2)
-
(2010)
Antibody Engineering
, vol.2
, pp. 11-31
-
-
Ehrenmann, F.1
Duroux, P.2
Giudicelli, V.3
Lefranc, M.-P.4
-
120
-
-
84934443957
-
Use of IMGT® databases and tools for antibody engineering and humanization
-
P. Chames, Methods Mol Biol Humana Press, Springer New York, USA (chap 1)
-
M.-P. Lefranc, F. Ehrenmann, C. Ginestoux, P. Duroux, and V. Giudicelli Use of IMGT® databases and tools for antibody engineering and humanization P. Chames, Antibody Engineering Methods Mol Biol 907 2012 Humana Press, Springer New York, USA 3 37 (chap 1)
-
(2012)
Antibody Engineering
, vol.907
, pp. 3-37
-
-
Lefranc, M.-P.1
Ehrenmann, F.2
Ginestoux, C.3
Duroux, P.4
Giudicelli, V.5
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