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Volumn 45, Issue 14, 2008, Pages 3832-3839

Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains

Author keywords

Antibody sequences; Automated numbering; Chothia numbering; Computer software; Kabat numbering

Indexed keywords

ANTIBODY;

EID: 48049124972     PISSN: 01615890     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molimm.2008.05.022     Document Type: Article
Times cited : (169)

References (26)
  • 1
    • 0031558798 scopus 로고    scopus 로고
    • Standard conformations for the canonical structures of immunoglobulins
    • Al-Lazikani B., Lesk A.M., and Chothia C. Standard conformations for the canonical structures of immunoglobulins. J. Mol. Biol. 273 (1997) 927-948
    • (1997) J. Mol. Biol. , vol.273 , pp. 927-948
    • Al-Lazikani, B.1    Lesk, A.M.2    Chothia, C.3
  • 2
    • 0036171255 scopus 로고    scopus 로고
    • SACS-self-maintaining database of antibody crystal structure information
    • Allcorn L.C., and Martin A.C.R. SACS-self-maintaining database of antibody crystal structure information. Bioinformatics 18 (2002) 175-181
    • (2002) Bioinformatics , vol.18 , pp. 175-181
    • Allcorn, L.C.1    Martin, A.C.R.2
  • 3
    • 0018654090 scopus 로고
    • Three-dimensional structure of immunoglobulins
    • Amzel L.M., and Poljak R.J. Three-dimensional structure of immunoglobulins. Annu. Rev. Biochem. 48 (1979) 961-997
    • (1979) Annu. Rev. Biochem. , vol.48 , pp. 961-997
    • Amzel, L.M.1    Poljak, R.J.2
  • 4
    • 0023161406 scopus 로고
    • Mutation drift and repertoire shift in the maturation of the immune response
    • Berek C., and Milstein C. Mutation drift and repertoire shift in the maturation of the immune response. Immunol. Rev. 96 (1987) 23-41
    • (1987) Immunol. Rev. , vol.96 , pp. 23-41
    • Berek, C.1    Milstein, C.2
  • 6
    • 0032500701 scopus 로고    scopus 로고
    • A comparison of the crystallographic structures of two catalytic antibodies with esterase activity
    • Buchbinder J.L., Stephenson R.C., Scanlan T.S., and Fletterick R.J. A comparison of the crystallographic structures of two catalytic antibodies with esterase activity. J. Mol. Biol. 282 (1998) 1033-1041
    • (1998) J. Mol. Biol. , vol.282 , pp. 1033-1041
    • Buchbinder, J.L.1    Stephenson, R.C.2    Scanlan, T.S.3    Fletterick, R.J.4
  • 7
    • 0023278330 scopus 로고
    • Canonical structures for the hypervariable regions of immunoglobulins
    • Chothia C., and Lesk A.M. Canonical structures for the hypervariable regions of immunoglobulins. J. Mol. Biol. 196 (1987) 901-917
    • (1987) J. Mol. Biol. , vol.196 , pp. 901-917
    • Chothia, C.1    Lesk, A.M.2
  • 9
    • 0029083989 scopus 로고
    • SUBIM: a program for analysing the Kabat database and determining the variability subgroup of a new immunoglobulin sequence
    • Deret S., Maissiat C., Aucouturier P., and Chomilier J. SUBIM: a program for analysing the Kabat database and determining the variability subgroup of a new immunoglobulin sequence. Comput. Appl. Biosci. 11 (1995) 435-439
    • (1995) Comput. Appl. Biosci. , vol.11 , pp. 435-439
    • Deret, S.1    Maissiat, C.2    Aucouturier, P.3    Chomilier, J.4
  • 11
    • 0024581847 scopus 로고
    • A B72.3 second-generation-monoclonal antibody (CC49) defines the mucin-carried carbohydrate epitope Gal beta(1-3) [NeuAc alpha(2-6)]GalNAc
    • Hanisch F.G., Uhlenbruck G., Egge H., and Peter-Katalinić J. A B72.3 second-generation-monoclonal antibody (CC49) defines the mucin-carried carbohydrate epitope Gal beta(1-3) [NeuAc alpha(2-6)]GalNAc. Biol. Chem. Hoppe Seyler 370 (1989) 21-26
    • (1989) Biol. Chem. Hoppe Seyler , vol.370 , pp. 21-26
    • Hanisch, F.G.1    Uhlenbruck, G.2    Egge, H.3    Peter-Katalinić, J.4
  • 12
    • 0035827172 scopus 로고    scopus 로고
    • Yet another numbering scheme for immunoglobulin variable domains: an automatic modeling and analysis tool
    • Honegger A., and Plückthun A. Yet another numbering scheme for immunoglobulin variable domains: an automatic modeling and analysis tool. J. Mol. Biol. 309 (2001) 657-670
    • (2001) J. Mol. Biol. , vol.309 , pp. 657-670
    • Honegger, A.1    Plückthun, A.2
  • 13
    • 0035171080 scopus 로고    scopus 로고
    • Kabat Database and its applications: Future directions
    • Johnson G., and Wu T.T. Kabat Database and its applications: Future directions. Nucl. Acid Res. 29 (2001) 205-206
    • (2001) Nucl. Acid Res. , vol.29 , pp. 205-206
    • Johnson, G.1    Wu, T.T.2
  • 15
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
    • Kraulis P.J. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures. J. Appl. Cryst. 24 (1991) 946-950
    • (1991) J. Appl. Cryst. , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 17
    • 0027199726 scopus 로고
    • Human rheumatoid B-1a (CD5+ B) cells make somatically hypermutated high affinity IgM rheumatoid factors
    • Mantovani L., Wilder R.L., and Casali P. Human rheumatoid B-1a (CD5+ B) cells make somatically hypermutated high affinity IgM rheumatoid factors. J. Immunol. 151 (1993) 473-488
    • (1993) J. Immunol. , vol.151 , pp. 473-488
    • Mantovani, L.1    Wilder, R.L.2    Casali, P.3
  • 18
    • 0029993902 scopus 로고    scopus 로고
    • Accessing the Kabat antibody sequence database by computer.
    • Martin A.C. Accessing the Kabat antibody sequence database by computer. Proteins: Struct., Funct., Genet. 25 (1996) 130-133
    • (1996) Proteins: Struct., Funct., Genet. , vol.25 , pp. 130-133
    • Martin, A.C.1
  • 19
    • 0000009443 scopus 로고
    • Rapid comparison of protein structures
    • McLachlan A.D. Rapid comparison of protein structures. Acta Crystallogr. A 38 (1982) 871-873
    • (1982) Acta Crystallogr. A , vol.38 , pp. 871-873
    • McLachlan, A.D.1
  • 20
    • 0031252288 scopus 로고    scopus 로고
    • Abbreviated junctional sequences impoverish antibody diversity in urodele amphibians
    • Patel H.M., and Hsu E. Abbreviated junctional sequences impoverish antibody diversity in urodele amphibians. J. Immunol. 159 (1997) 3391-3399
    • (1997) J. Immunol. , vol.159 , pp. 3391-3399
    • Patel, H.M.1    Hsu, E.2
  • 21
    • 34247876138 scopus 로고    scopus 로고
    • Development trends for monoclonal antibody cancer therapeutics
    • Reichert J.M., and Valge-Archer V.E. Development trends for monoclonal antibody cancer therapeutics. Nat. Rev. Drug Discov. 6 (2007) 349-356
    • (2007) Nat. Rev. Drug Discov. , vol.6 , pp. 349-356
    • Reichert, J.M.1    Valge-Archer, V.E.2
  • 24
    • 13044317259 scopus 로고    scopus 로고
    • Structure of a monoclonal 2E8 Fab antibody fragment specific for the low-density lipoprotein-receptor binding region of apolipoprotein E refined at 1.9 A
    • Trakhanov S., Parkin S., Raffaï R., Milne R., Newhouse Y.M., Weisgraber K.H., and Rupp B. Structure of a monoclonal 2E8 Fab antibody fragment specific for the low-density lipoprotein-receptor binding region of apolipoprotein E refined at 1.9 A. Acta Crystallogr. D 55 (1999) 122-128
    • (1999) Acta Crystallogr. D , vol.55 , pp. 122-128
    • Trakhanov, S.1    Parkin, S.2    Raffaï, R.3    Milne, R.4    Newhouse, Y.M.5    Weisgraber, K.H.6    Rupp, B.7
  • 25
    • 0014828908 scopus 로고
    • An analysis of the sequences of the variable regions of Bence Jones proteins and myeloma light chains and their implications for antibody complementarity
    • Wu T.T., and Kabat E.A. An analysis of the sequences of the variable regions of Bence Jones proteins and myeloma light chains and their implications for antibody complementarity. J. Exp. Med. 132 (1970) 211-250
    • (1970) J. Exp. Med. , vol.132 , pp. 211-250
    • Wu, T.T.1    Kabat, E.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.