-
1
-
-
84975795680
-
An integrated map of genetic variation from 1, 092 human genomes
-
The 1000 Genomes Project Consortium.
-
The 1000 Genomes Project Consortium. 2012. An integrated map of genetic variation from 1, 092 human genomes. Nature 491: 56-65.
-
(2012)
Nature
, vol.491
, pp. 56-65
-
-
-
2
-
-
84857216671
-
The mutational profile of the yeast genome is shaped by replication
-
Agier N, Fischer G. 2012. The mutational profile of the yeast genome is shaped by replication. Mol Biol Evol 29: 905-913.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 905-913
-
-
Agier, N.1
Fischer, G.2
-
3
-
-
84882837534
-
Signatures of mutational processes in human cancer
-
Alexandrov LB, Nik-Zainal S, Wedge DC, Aparicio SAJR, Behjati S, Biankin AV, Bignell GR, Bolli N, Borg A , Børresen-Dale AL, et al. 2013. Signatures of mutational processes in human cancer. Nature 500: 415-421.
-
(2013)
Nature
, vol.500
, pp. 415-421
-
-
Alexandrov, L.B.1
Nik-Zainal, S.2
Wedge, D.C.3
Sajr, A.4
Behjati, S.5
Biankin, A.V.6
Bignell, G.R.7
Bolli, N.8
Borg, A.9
Børresen-Dale, A.L.10
-
4
-
-
0033151820
-
Substrate specificity of ultraviolet DNA endonuclease (UVDE/Uve1p) from Schizosaccharomyces pombe
-
Avery AM, Kaur B, Taylor JS, Mello JA, Essigmann JM, Doetsch PW. 1999. Substrate specificity of ultraviolet DNA endonuclease (UVDE/Uve1p) from Schizosaccharomyces pombe. Nucleic Acids Res 27: 2256-2264.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 2256-2264
-
-
Avery, A.M.1
Kaur, B.2
Taylor, J.S.3
Mello, J.A.4
Essigmann, J.M.5
Doetsch, P.W.6
-
5
-
-
78651339534
-
NCBI GEO: Archive for functional genomics data sets-10 years on
-
Barrett T, Troup DB, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, et al. 2010. NCBI GEO: archive for functional genomics data sets-10 years on. Nucleic Acids Res 39: D1005-D1010
-
(2010)
Nucleic Acids Res
, vol.39
, pp. D1005-D1010
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Evangelista, C.5
Kim, I.F.6
Tomashevsky, M.7
Marshall, K.A.8
Phillippy, K.H.9
Sherman, P.M.10
-
6
-
-
84868521629
-
Measuring the formation and repair of UV damage at the DNA sequence level by ligation-mediated PCR
-
Besaratinia A, Pfeifer GP. 2012. Measuring the formation and repair of UV damage at the DNA sequence level by ligation-mediated PCR. Methods Mol Biol 920: 189-202.
-
(2012)
Methods Mol Biol
, vol.920
, pp. 189-202
-
-
Besaratinia, A.1
Pfeifer, G.P.2
-
7
-
-
0030979178
-
Folate deficiency causes uracil misincorporation into human DNA and chromosome breakage: Implications for cancer and neuronal damage
-
Blount BC, Mack MM, Wehr CM, MacGregor JT, Hiatt RA, Wang G, Wickramasinghe SN, Everson RB, Ames BN. 1997. Folate deficiency causes uracil misincorporation into human DNA and chromosome breakage: implications for cancer and neuronal damage. Proc Natl Acad Sci 94: 3290-3295.
-
(1997)
Proc Natl Acad Sci
, vol.94
, pp. 3290-3295
-
-
Blount, B.C.1
Mack, M.M.2
Wehr, C.M.3
Macgregor, J.T.4
Hiatt, R.A.5
Wang, G.6
Wickramasinghe, S.N.7
Everson, R.B.8
Ames, B.N.9
-
8
-
-
0020526968
-
Formation of an adeninethymine photoadduct in the deoxydinucleoside monophosphate d(TpA) and in DNA
-
Bose SN, Davies RJ, Sethi SK, McCloskey JA. 1983. Formation of an adeninethymine photoadduct in the deoxydinucleoside monophosphate d(TpA) and in DNA. Science 220: 723-725.
-
(1983)
Science
, vol.220
, pp. 723-725
-
-
Bose, S.N.1
Davies, R.J.2
Sethi, S.K.3
McCloskey, J.A.4
-
9
-
-
38049050698
-
Direct detection and mapping of sites of base modification in DNA fragments by tandem mass spectrometry
-
Chowdhury G, Guengerich FP. 2008. Direct detection and mapping of sites of base modification in DNA fragments by tandem mass spectrometry. Agnew Chem Int Ed Engl 47: 381-384.
-
(2008)
Agnew Chem Int Ed Engl
, vol.47
, pp. 381-384
-
-
Chowdhury, G.1
Guengerich, F.P.2
-
11
-
-
64449088698
-
Continuous base identification for single-molecule nanopore DNA sequencing
-
Clarke J, Wu HC, Jayasinghe L, Patel A, Reid S, Bayley H. 2009. Continuous base identification for single-molecule nanopore DNA sequencing. Nat Nanotechnol 4: 265-270.
-
(2009)
Nat Nanotechnol
, vol.4
, pp. 265-270
-
-
Clarke, J.1
Wu, H.C.2
Jayasinghe, L.3
Patel, A.4
Reid, S.5
Bayley, H.6
-
12
-
-
84856583250
-
Abasic sites linked to dUTP incorporation in DNA are a major cause of spontaneous mutations in absence of base excision repair and Rad17-Mec3-Ddc1 (9-1-1) DNA damage checkpoint clamp in Saccharomyces cerevisiae
-
Collura A, Kemp PAVD, Boiteux S. 2012. Abasic sites linked to dUTP incorporation in DNA are a major cause of spontaneous mutations in absence of base excision repair and Rad17-Mec3-Ddc1 (9-1-1) DNA damage checkpoint clamp in Saccharomyces cerevisiae. DNA Repair (Amst) 11: 294-303.
-
(2012)
DNA Repair (Amst)
, vol.11
, pp. 294-303
-
-
Collura, A.1
Kemp, P.A.V.D.2
Boiteux, S.3
-
13
-
-
33749245331
-
Abrogation of the CLK-2 checkpoint leads to tolerance to base-excision repair intermediates
-
Dengg M, Garcia-Muse T, Gill SG, Ashcroft N, Boulton SJ, Nilsen H. 2006. Abrogation of the CLK-2 checkpoint leads to tolerance to base-excision repair intermediates. EMBO Rep 7: 1046-1051.
-
(2006)
EMBO Rep
, vol.7
, pp. 1046-1051
-
-
Dengg, M.1
Garcia-Muse, T.2
Gill, S.G.3
Ashcroft, N.4
Boulton, S.J.5
Nilsen, H.6
-
14
-
-
0035957120
-
Individual determination of the yield of the main UV-induced dimeric pyrimidine photoproducts in DNA suggests a high mutagenicity of CC photolesions
-
Douki T, Cadet J. 2001. Individual determination of the yield of the main UV-induced dimeric pyrimidine photoproducts in DNA suggests a high mutagenicity of CC photolesions. Biochemistry 40: 2495-2501.
-
(2001)
Biochemistry
, vol.40
, pp. 2495-2501
-
-
Douki, T.1
Cadet, J.2
-
15
-
-
77950962157
-
Conserved nucleosome positioning defines replication origins
-
Eaton ML, Galani K, Kang S, Bell SP, MacAlpine DM. 2010. Conserved nucleosome positioning defines replication origins. Genes Dev 24: 748-753.
-
(2010)
Genes Dev
, vol.24
, pp. 748-753
-
-
Eaton, M.L.1
Galani, K.2
Kang, S.3
Bell, S.P.4
Macalpine, D.M.5
-
16
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
The ENCODE Project Consortium
-
The ENCODE Project Consortium. 2012. An integrated encyclopedia of DNA elements in the human genome. Nature 489: 57-74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
-
17
-
-
33645152790
-
Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication
-
Feng W, Collingwood D, Boeck ME, Fox LA, Alvino GM, Fangman WL, Raghuraman MK, Brewer BJ. 2006. Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication. Nat Cell Biol 8: 148-155.
-
(2006)
Nat Cell Biol
, vol.8
, pp. 148-155
-
-
Feng, W.1
Collingwood, D.2
Boeck, M.E.3
Fox, L.A.4
Alvino, G.M.5
Fangman, W.L.6
Raghuraman, M.K.7
Brewer, B.J.8
-
18
-
-
0035495386
-
How nucleotide excision repair protects against cancer
-
Friedberg EC. 2001. How nucleotide excision repair protects against cancer. Nat Rev Cancer 1: 22-33.
-
(2001)
Nat Rev Cancer
, vol.1
, pp. 22-33
-
-
Friedberg, E.C.1
-
19
-
-
0027426749
-
DUTP pyrophosphatase is an essential enzyme in Saccharomyces cerevisiae
-
Gadsden MH, McIntosh EM, Game JC, Wilson PJ, Haynes RH. 1993. dUTP pyrophosphatase is an essential enzyme in Saccharomyces cerevisiae. EMBO J 12: 4425-4431.
-
(1993)
EMBO J
, vol.12
, pp. 4425-4431
-
-
Gadsden, M.H.1
McIntosh, E.M.2
Game, J.C.3
Wilson, P.J.4
Haynes, R.H.5
-
20
-
-
0022642948
-
Detection of UV purine photoproducts in a defined sequence of human DNA
-
Gallagher PE, Duker NJ. 1986. Detection of UV purine photoproducts in a defined sequence of human DNA. Mol Cell Biol 6: 707-709.
-
(1986)
Mol Cell Biol
, vol.6
, pp. 707-709
-
-
Gallagher, P.E.1
Duker, N.J.2
-
21
-
-
33645924354
-
DUTPase activity is critical to maintain genetic stability in Saccharomyces cerevisiae
-
Guillet M, van der Kemp PA, Boiteux S. 2006. dUTPase activity is critical to maintain genetic stability in Saccharomyces cerevisiae. Nucleic Acids Res 34: 2056-2066.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 2056-2066
-
-
Guillet, M.1
Van Der Kemp, P.A.2
Boiteux, S.3
-
22
-
-
56749157389
-
Transcription-coupled DNA repair: Two decades of progress and surprises
-
Hanawalt PC, Spivak G. 2008. Transcription-coupled DNA repair: two decades of progress and surprises. Nat Rev Mol Cell Biol 9: 958-970.
-
(2008)
Nat Rev Mol Cell Biol
, vol.9
, pp. 958-970
-
-
Hanawalt, P.C.1
Spivak, G.2
-
23
-
-
63849308888
-
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting
-
Hesselberth JR, Chen X, Zhang Z, Sabo PJ, Sandstrom R, Reynolds AP, Thurman RE, Neph S, KuehnMS, Noble WS, et al. 2009. Global mapping of protein-DNA interactions in vivo by digital genomic footprinting. Nat Methods 6: 283-289.
-
(2009)
Nat Methods
, vol.6
, pp. 283-289
-
-
Hesselberth, J.R.1
Chen, X.2
Zhang, Z.3
Sabo, P.J.4
Sandstrom, R.5
Reynolds, A.P.6
Thurman, R.E.7
Neph, S.8
Kuehnms Noble, W.S.9
-
24
-
-
84877108149
-
Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation
-
Hiatt JB, Pritchard CC, Salipante SJ, O'Roak BJ, Shendure J. 2013. Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation. Genome Res 23: 843-854.
-
(2013)
Genome Res
, vol.23
, pp. 843-854
-
-
Hiatt, J.B.1
Pritchard, C.C.2
Salipante, S.J.3
O'roak, B.J.4
Shendure, J.5
-
25
-
-
84862785201
-
Unsupervised pattern discovery in human chromatin structure through genomic segmentation
-
Hoffman MM, Buske OJ, Wang J, Weng Z, Bilmes JA, Noble WS. 2012. Unsupervised pattern discovery in human chromatin structure through genomic segmentation. Nat Methods 9: 473-476.
-
(2012)
Nat Methods
, vol.9
, pp. 473-476
-
-
Hoffman, M.M.1
Buske, O.J.2
Wang, J.3
Weng, Z.4
Bilmes, J.A.5
Noble, W.S.6
-
27
-
-
33847621554
-
Uracil in DNA-general mutagen, but normal intermediate in acquired immunity
-
Kavli B, Otterlei M, Slupphaug G, Krokan HE. 2007. Uracil in DNA-general mutagen, but normal intermediate in acquired immunity. DNA Repair (Amst) 6: 505-516.
-
(2007)
DNA Repair (Amst)
, vol.6
, pp. 505-516
-
-
Kavli, B.1
Otterlei, M.2
Slupphaug, G.3
Krokan, H.E.4
-
28
-
-
67649559461
-
DUTP incorporation into genomic DNA is linked to transcription in yeast
-
Kim N, Jinks-Robertson S. 2009. dUTP incorporation into genomic DNA is linked to transcription in yeast. Nature 459: 1150-1153.
-
(2009)
Nature
, vol.459
, pp. 1150-1153
-
-
Kim, N.1
Jinks-Robertson, S.2
-
29
-
-
69249236962
-
The B cell mutator AID promotes B lymphoid blast crisis and drug resistance in chronic myeloid leukemia
-
Klemm L, Duy C, Iacobucci I, Kuchen S, von Levetzow G, Feldhahn N, Henke N, Li Z, Hoffmann TK, Kim YM, et al. 2009. The B cell mutator AID promotes B lymphoid blast crisis and drug resistance in chronic myeloid leukemia. Cancer Cell 16: 232-245.
-
(2009)
Cancer Cell
, vol.16
, pp. 232-245
-
-
Klemm, L.1
Duy, C.2
Iacobucci, I.3
Kuchen, S.4
Von Levetzow, G.5
Feldhahn, N.6
Henke, N.7
Li, Z.8
Hoffmann, T.K.9
Kim, Y.M.10
-
30
-
-
0345791546
-
Hydroxyurea arrests DNA replication by a mechanism that preserves basal dNTP pools
-
Koç A, Wheeler LJ, Mathews CK, Merrill GF. 2004. Hydroxyurea arrests DNA replication by a mechanism that preserves basal dNTP pools. J Biol Chem 279: 223-230.
-
(2004)
J Biol Chem
, vol.279
, pp. 223-230
-
-
Koç, A.1
Wheeler, L.J.2
Mathews, C.K.3
Merrill, G.F.4
-
31
-
-
84886860116
-
TET enzymes, TDG and the dynamics of DNA demethylation
-
Kohli RM, Zhang Y. 2013. TET enzymes, TDG and the dynamics of DNA demethylation. Nature 502: 472-479.
-
(2013)
Nature
, vol.502
, pp. 472-479
-
-
Kohli, R.M.1
Zhang, Y.2
-
32
-
-
84888313076
-
Global methylation state at base-pair resolution of the Caulobacter genome throughout the cell cycle
-
Kozdon JB, Melfi MD, Luong K, Boitano M, Wang S, Zhou B, Gonzalez D, Collier J, Shapiro L, McAdams HH. 2013. Global methylation state at base-pair resolution of the Caulobacter genome throughout the cell cycle. Proc Natl Acad Sci 110: E4658-E4667.
-
(2013)
Proc Natl Acad Sci
, vol.110
, pp. E4658-E4667
-
-
Kozdon, J.B.1
Melfi, M.D.2
Luong, K.3
Boitano, M.4
Wang, S.5
Zhou, B.6
Gonzalez, D.7
Collier, J.8
Shapiro, L.9
McAdams, H.H.10
-
33
-
-
0037115911
-
Uracil in DNA-occurrence, consequences and repair
-
Krokan HE, Drabløs F, Slupphaug G. 2002. Uracil in DNA-occurrence, consequences and repair. Oncogene 21: 8935-8948.
-
(2002)
Oncogene
, vol.21
, pp. 8935-8948
-
-
Krokan, H.E.1
Drabløs, F.2
Slupphaug, G.3
-
34
-
-
62349130698
-
Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
-
(2009)
Genome Biol
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
35
-
-
84881101309
-
Sequence-dependent thymine dimer formation and photoreversal rates in double-stranded DNA
-
Law YK, Forties RA, Liu X, Poirier MG, Kohler B. 2013. Sequence-dependent thymine dimer formation and photoreversal rates in double-stranded DNA. Photochem Photobiol Sci 12: 1431-1439.
-
(2013)
Photochem Photobiol Sci
, vol.12
, pp. 1431-1439
-
-
Law, Y.K.1
Forties, R.A.2
Liu, X.3
Poirier, M.G.4
Kohler, B.5
-
36
-
-
77956340995
-
Comprehensive comparative analysis of strand-specific RNA sequencing methods
-
Levin JZ, Yassour M, Adiconis X, Nusbaum C, Thompson DA, Friedman N, Gnirke A, Regev A. 2010. Comprehensive comparative analysis of strand-specific RNA sequencing methods. Nat Methods 7: 709-715.
-
(2010)
Nat Methods
, vol.7
, pp. 709-715
-
-
Levin, J.Z.1
Yassour, M.2
Adiconis, X.3
Nusbaum, C.4
Thompson, D.A.5
Friedman, N.6
Gnirke, A.7
Regev, A.8
-
37
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25: 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
38
-
-
0038387494
-
5-fluorouracil: Mechanisms of action and clinical strategies
-
Longley DB, Harkin DP, Johnston PG. 2003. 5-fluorouracil: mechanisms of action and clinical strategies. Nat Rev Cancer 3: 330-338.
-
(2003)
Nat Rev Cancer
, vol.3
, pp. 330-338
-
-
Longley, D.B.1
Harkin, D.P.2
Johnston, P.G.3
-
39
-
-
77955964086
-
AID and somatic hypermutation
-
Maul RW, Gearhart PJ. 2010. AID and somatic hypermutation. Adv Immunol 105: 159-191.
-
(2010)
Adv Immunol
, vol.105
, pp. 159-191
-
-
Maul, R.W.1
Gearhart, P.J.2
-
40
-
-
78650307766
-
Uracil residues dependent on the deaminase AID in immunoglobulin gene variable and switch regions
-
Maul RW, Saribasak H, Martomo SA, McClure RL, Yang W, Vaisman A, Gramlich HS, Schatz DG, Woodgate R, Wilson DM, et al. 2011. Uracil residues dependent on the deaminase AID in immunoglobulin gene variable and switch regions. Nat Immunol 12: 70-76.
-
(2011)
Nat Immunol
, vol.12
, pp. 70-76
-
-
Maul, R.W.1
Saribasak, H.2
Martomo, S.A.3
McClure, R.L.4
Yang, W.5
Vaisman, A.6
Gramlich, H.S.7
Schatz, D.G.8
Woodgate, R.9
Wilson, D.M.10
-
41
-
-
0024049251
-
The relative cytotoxicity of (6-4) photoproducts and cyclobutane dimers inmammalian cells
-
Mitchell DL. 1988. The relative cytotoxicity of (6-4) photoproducts and cyclobutane dimers inmammalian cells. Photochem Photobiol 48: 51-57.
-
(1988)
Photochem Photobiol
, vol.48
, pp. 51-57
-
-
Mitchell, D.L.1
-
42
-
-
77950406088
-
Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases
-
Nick McElhinny SA, Watts BE, Kumar D, Watt DL, Lundström EB, Burgers PMJ, Johansson E, Chabes A, Kunkel TA. 2010. Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases. Proc Natl Acad Sci 107: 4949-4954.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 4949-4954
-
-
Nick McElhinny, S.A.1
Watts, B.E.2
Kumar, D.3
Watt, D.L.4
Lundström, E.B.5
Pmj, B.6
Johansson, E.7
Chabes, A.8
Kunkel, T.A.9
-
43
-
-
33846110760
-
OriDB: A DNA replication origin database
-
Nieduszynski CA, Hiraga SI, Ak P, Benham CJ, Donaldson AD. 2007. OriDB: a DNA replication origin database. Nucleic Acids Res 35: D40-D46.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. D40-D46
-
-
Nieduszynski, C.A.1
Hiraga, S.I.2
Ak, P.3
Benham, C.J.4
Donaldson, A.D.5
-
44
-
-
0031080462
-
Formation and processing of UV photoproducts: Effects of DNA sequence and chromatin environment
-
Pfeifer GP. 1997. Formation and processing of UV photoproducts: effects of DNA sequence and chromatin environment. Photochem Photobiol 65: 270-283.
-
(1997)
Photochem Photobiol
, vol.65
, pp. 270-283
-
-
Pfeifer, G.P.1
-
45
-
-
0026071587
-
In vivo mapping of a DNA adduct at nucleotide resolution: Detection of pyrimidine (6-4) pyrimidone photoproducts by ligation-mediated polymerase chain reaction
-
Pfeifer GP, Drouin R, Riggs AD, Holmquist GP. 1991. In vivo mapping of a DNA adduct at nucleotide resolution: detection of pyrimidine (6-4) pyrimidone photoproducts by ligation-mediated polymerase chain reaction. Proc Natl Acad Sci 88: 1374-1378.
-
(1991)
Proc Natl Acad Sci
, vol.88
, pp. 1374-1378
-
-
Pfeifer, G.P.1
Drouin, R.2
Riggs, A.D.3
Holmquist, G.P.4
-
46
-
-
84857060479
-
DNTP pools determine fork progression and origin usage under replication stress
-
Poli J, Tsaponina O, Crabbé L, Keszthelyi A, Pantesco V, Chabes A, Lengronne A, Pasero P. 2012. dNTP pools determine fork progression and origin usage under replication stress. EMBO J 31: 883-894.
-
(2012)
EMBO J
, vol.31
, pp. 883-894
-
-
Poli, J.1
Tsaponina, O.2
Crabbé, L.3
Keszthelyi, A.4
Pantesco, V.5
Chabes, A.6
Lengronne, A.7
Pasero, P.8
-
47
-
-
0022802408
-
UV light-induced cyclobutane pyrimidine dimers are mutagenic in mammalian cells
-
Protić-Sabljić M, Tuteja N, Munson PJ, Hauser J, Kraemer KH, Dixon K. 1986. UV light-induced cyclobutane pyrimidine dimers are mutagenic in mammalian cells. Mol Cell Biol 6: 3349-3356.
-
(1986)
Mol Cell Biol
, vol.6
, pp. 3349-3356
-
-
Protić-Sabljić, M.1
Tuteja, N.2
Munson, P.J.3
Hauser, J.4
Kraemer, K.H.5
Dixon, K.6
-
48
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan AR, Hall IM. 2010. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26: 841-842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
49
-
-
0035812808
-
Replication dynamics of the yeast genome
-
Raghuraman MK, Winzeler EA, Collingwood D, Hunt S, Wodicka L, Conway A, Lockhart DJ, Davis RW, Brewer BJ, Fangman WL. 2001. Replication dynamics of the yeast genome. Science 294: 115-121.
-
(2001)
Science
, vol.294
, pp. 115-121
-
-
Raghuraman, M.K.1
Winzeler, E.A.2
Collingwood, D.3
Hunt, S.4
Wodicka, L.5
Conway, A.6
Lockhart, D.J.7
Davis, R.W.8
Brewer, B.J.9
Fangman, W.L.10
-
50
-
-
84874681638
-
Translesion DNA synthesis and mutagenesis in eukaryotes
-
Sale JE. 2013. Translesion DNA synthesis and mutagenesis in eukaryotes. Cold Spring Harb Perspect Biol 5: a012708.
-
(2013)
Cold Spring Harb Perspect Biol
, vol.5
, pp. a012708
-
-
Sale, J.E.1
-
51
-
-
33745218298
-
Purification and characterization of DNA photolyases
-
Sancar GB, Sancar A. 2006. Purification and characterization of DNA photolyases. Methods Enzymol 408: 121-156.
-
(2006)
Methods Enzymol
, vol.408
, pp. 121-156
-
-
Sancar, G.B.1
Sancar, A.2
-
52
-
-
0032497529
-
A Mec1- and Rad53-dependent checkpoint controls late-firing origins of DNA replication
-
Santocanale C, Diffley JF. 1998. A Mec1- and Rad53-dependent checkpoint controls late-firing origins of DNA replication. Nature 395: 615-618.
-
(1998)
Nature
, vol.395
, pp. 615-618
-
-
Santocanale, C.1
Diffley, J.F.2
-
53
-
-
0034653288
-
Interactions of the human, rat, Saccharomyces cerevisiae and Escherichia coli 3-methyladenine-DNA glycosylases with DNA containing dIMP residues
-
Saparbaev M, Mani JC, Laval J. 2000. Interactions of the human, rat, Saccharomyces cerevisiae and Escherichia coli 3-methyladenine-DNA glycosylases with DNA containing dIMP residues. Nucleic Acids Res 28: 1332-1339.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 1332-1339
-
-
Saparbaev, M.1
Mani, J.C.2
Laval, J.3
-
54
-
-
84865979581
-
Detection of ultra-rare mutations by next-generation sequencing
-
SchmittMW, Kennedy SR, Salk JJ, Fox EJ, Hiatt JB, Loeb LA. 2012. Detection of ultra-rare mutations by next-generation sequencing. Proc Natl Acad Sci 109: 14508-14513.
-
(2012)
Proc Natl Acad Sci
, vol.109
, pp. 14508-14513
-
-
Schmitt, M.W.1
Kennedy, S.R.2
Salk, J.J.3
Fox, E.J.4
Hiatt, J.B.5
Loeb, L.A.6
-
55
-
-
32644448942
-
Microarraybased DNA methylation profiling: Technology and applications
-
Schumacher A, Kapranov P, Kaminsky Z, Flanagan J, Assadzadeh A, Yau P, Virtanen C, Winegarden N, Cheng J, Gingeras T, et al. 2006. Microarraybased DNA methylation profiling: technology and applications. Nucleic Acids Res 34: 528-542.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 528-542
-
-
Schumacher, A.1
Kapranov, P.2
Kaminsky, Z.3
Flanagan, J.4
Assadzadeh, A.5
Yau, P.6
Virtanen, C.7
Winegarden, N.8
Cheng, J.9
Gingeras, T.10
-
56
-
-
31644442238
-
Linking uracil base excision repair and 5-fluorouracil toxicity in yeast
-
Seiple L, Jaruga P, Dizdaroglu M, Stivers JT. 2006. Linking uracil base excision repair and 5-fluorouracil toxicity in yeast. Nucleic Acids Res 34: 140-151.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 140-151
-
-
Seiple, L.1
Jaruga, P.2
Dizdaroglu, M.3
Stivers, J.T.4
-
58
-
-
63449141981
-
Human mutation rate associated with DNA replication timing
-
Stamatoyannopoulos JA, Adzhubei I, Thurman RE, Kryukov GV, Mirkin SM, Sunyaev SR. 2009. Human mutation rate associated with DNA replication timing. Nat Genet 41: 393-395.
-
(2009)
Nat Genet
, vol.41
, pp. 393-395
-
-
Stamatoyannopoulos, J.A.1
Adzhubei, I.2
Thurman, R.E.3
Kryukov, G.V.4
Mirkin, S.M.5
Sunyaev, S.R.6
-
59
-
-
0033579953
-
Kinetic mechanism of damage site recognition and uracil flipping by Escherichia coli uracil DNA glycosylase
-
Stivers JT, Pankiewicz KW, Watanabe KA. 1999. Kinetic mechanism of damage site recognition and uracil flipping by Escherichia coli uracil DNA glycosylase. Biochemistry 38: 952-963.
-
(1999)
Biochemistry
, vol.38
, pp. 952-963
-
-
Stivers, J.T.1
Pankiewicz, K.W.2
Watanabe, K.A.3
-
60
-
-
75749144248
-
Regulation of damage recognition in mammalian global genomic nucleotide excision repair
-
Sugasawa K. 2010. Regulation of damage recognition in mammalian global genomic nucleotide excision repair. Mutat Res 685: 29-37.
-
(2010)
Mutat Res
, vol.685
, pp. 29-37
-
-
Sugasawa, K.1
-
61
-
-
0028305008
-
Substrate specificity of Fpg protein. Recognition and cleavage of oxidatively damaged DNA
-
Tchou J, Bodepudi V, Shibutani S, Antoshechkin I, Miller J, Grollman AP, Johnson F. 1994. Substrate specificity of Fpg protein. Recognition and cleavage of oxidatively damaged DNA. J Biol Chem 269: 15318-15324.
-
(1994)
J Biol Chem
, vol.269
, pp. 15318-15324
-
-
Tchou, J.1
Bodepudi, V.2
Shibutani, S.3
Antoshechkin, I.4
Miller, J.5
Grollman, A.P.6
Johnson, F.7
-
62
-
-
79551497695
-
A novel method for the genome-wide high resolution analysis of DNA damage
-
Teng Y, Bennett M, Evans KE, Zhuang-Jackson H, Higgs A, Reed SH, Waters R. 2011. A novel method for the genome-wide high resolution analysis of DNA damage. Nucleic Acids Res 39: e10.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. e10
-
-
Teng, Y.1
Bennett, M.2
Evans, K.E.3
Zhuang-Jackson, H.4
Higgs, A.5
Reed, S.H.6
Waters, R.7
-
63
-
-
0026730948
-
Mapping of UV photoproducts within ras proto-oncogenes in UV-irradiated cells: Correlation with mutations in human skin cancer
-
Törmänen VT, Pfeifer GP. 1992. Mapping of UV photoproducts within ras proto-oncogenes in UV-irradiated cells: correlation with mutations in human skin cancer. Oncogene 7: 1729-1736.
-
(1992)
Oncogene
, vol.7
, pp. 1729-1736
-
-
Törmänen, V.T.1
Pfeifer, G.P.2
-
64
-
-
0027940249
-
Mapping of UV photoproducts along the human P53 gene
-
Tornaletti S, Rozek D, Pfeifer GP. 1994. Mapping of UV photoproducts along the human P53 gene. Ann NY Acad Sci 726: 324-326.
-
(1994)
Ann NY Acad Sci
, vol.726
, pp. 324-326
-
-
Tornaletti, S.1
Rozek, D.2
Pfeifer, G.P.3
-
65
-
-
0019475150
-
Synthesis and metabolism of uracil-containing deoxyribonucleic acid in Escherichia coli
-
Warner HR, Duncan BK, Garrett C, Neuhard J. 1981. Synthesis and metabolism of uracil-containing deoxyribonucleic acid in Escherichia coli. J Bacteriol 145: 687-695.
-
(1981)
J Bacteriol
, vol.145
, pp. 687-695
-
-
Warner, H.R.1
Duncan, B.K.2
Garrett, C.3
Neuhard, J.4
-
66
-
-
84873418397
-
Uracil DNA glycosylase initiates degradation of HIV-1 cDNA containing misincorporated dUTP and prevents viral integration
-
Weil AF, Ghosh D, Zhou Y, Seiple L, McMahon MA, Spivak AM, Siliciano RF, Stivers JT. 2013. Uracil DNA glycosylase initiates degradation of HIV-1 cDNA containing misincorporated dUTP and prevents viral integration. Proc Natl Acad Sci 110: E448-E457.
-
(2013)
Proc Natl Acad Sci
, vol.110
, pp. E448-E457
-
-
Weil, A.F.1
Ghosh, D.2
Zhou, Y.3
Seiple, L.4
McMahon, M.A.5
Spivak, A.M.6
Siliciano, R.F.7
Stivers, J.T.8
-
67
-
-
84892763878
-
Reversing DNA methylation: Mechanisms, genomics, and biological functions
-
Wu H, Zhang Y. 2014. Reversing DNA methylation: mechanisms, genomics, and biological functions. Cell 156: 45-68.
-
(2014)
Cell
, vol.156
, pp. 45-68
-
-
Wu, H.1
Zhang, Y.2
-
68
-
-
0036668464
-
Mapping of early firing origins on a replication profile of budding yeast
-
Yabuki N, Terashima H, Kitada K. 2002. Mapping of early firing origins on a replication profile of budding yeast. Genes Cells 7: 781-789.
-
(2002)
Genes Cells
, vol.7
, pp. 781-789
-
-
Yabuki, N.1
Terashima, H.2
Kitada, K.3
-
69
-
-
79953176952
-
Exome sequencing identifies somatic mutations of DNA methyltransferase gene DNMT3A in acute monocytic leukemia
-
Yan XJ, Xu J, Gu ZH, Pan CM, Lu G, Shen Y, Shi JY, Zhu YM, Tang L, Zhang XW, et al. 2011. Exome sequencing identifies somatic mutations of DNA methyltransferase gene DNMT3A in acute monocytic leukemia. Nat Genet 43: 309-315.
-
(2011)
Nat Genet
, vol.43
, pp. 309-315
-
-
Yan, X.J.1
Xu, J.2
Zh, G.3
Pan, C.M.4
Lu, G.5
Shen, Y.6
Shi, J.Y.7
Zhu, Y.M.8
Tang, L.9
Zhang, X.W.10
-
70
-
-
0032732425
-
Involvement of 5-methylcytosine in sunlight-induced mutagenesis
-
You YH, Li C, Pfeifer GP. 1999. Involvement of 5-methylcytosine in sunlight-induced mutagenesis. J Mol Biol 293: 493-503.
-
(1999)
J Mol Biol
, vol.293
, pp. 493-503
-
-
You, Y.H.1
Li, C.2
Pfeifer, G.P.3
-
71
-
-
0033729135
-
Cyclobutane pyrimidine dimers form preferentially at the major p53 mutational hotspot in UVB-induced mouse skin tumors
-
You YH, Szabó PE, Pfeifer GP. 2000. Cyclobutane pyrimidine dimers form preferentially at the major p53 mutational hotspot in UVB-induced mouse skin tumors. Carcinogenesis 21: 2113-2117.
-
(2000)
Carcinogenesis
, vol.21
, pp. 2113-2117
-
-
You, Y.H.1
Szabó, P.E.2
Pfeifer, G.P.3
-
72
-
-
84893293856
-
High-resolution characterization of CPD hotspot formation in human fibroblasts
-
Zavala AG, Morris RT, Wyrick JJ, Smerdon MJ. 2014. High-resolution characterization of CPD hotspot formation in human fibroblasts. Nucleic Acids Res 42: 893-905.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 893-905
-
-
Zavala, A.G.1
Morris, R.T.2
Wyrick, J.J.3
Smerdon, M.J.4
-
73
-
-
84876004639
-
Mapping genomic hotspots of DNA damage by a single-strand-DNAcompatible and strand-specificChIP-seqmethod
-
Zhou ZX, Zhang MJ, Peng X, Takayama Y, Xu XY, Huang LZ, Du LL. 2013. Mapping genomic hotspots of DNA damage by a single-strand-DNAcompatible and strand-specificChIP-seqmethod. Genome Res 23: 705-715.
-
(2013)
Genome Res
, vol.23
, pp. 705-715
-
-
Zhou, Z.X.1
Zhang, M.J.2
Peng, X.3
Takayama, Y.4
Xu, X.Y.5
Huang, L.Z.6
Du, L.L.7
|