메뉴 건너뛰기




Volumn 35, Issue SUPPL. 1, 2007, Pages

OriDB: A DNA replication origin database

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA;

EID: 33846110760     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl758     Document Type: Article
Times cited : (140)

References (41)
  • 1
    • 23444434202 scopus 로고    scopus 로고
    • A genomic view of eukaryotic DNA replication
    • MacAlpine,D.M. and Bell,S.P. (2005) A genomic view of eukaryotic DNA replication. Chromosome Res., 13, 309-326.
    • (2005) Chromosome Res. , vol.13 , pp. 309-326
    • MacAlpine, D.M.1    Bell, S.P.2
  • 2
    • 0018671664 scopus 로고
    • Isolation characterisation of a yeast chromosomal replicator
    • Stinchcomb,D.T., Struhl,K. and Davis,R.W. (1979) Isolation and characterisation of a yeast chromosomal replicator. Nature, 282, 39-43.
    • (1979) Nature , vol.282 , pp. 39-43
    • Stinchcomb, D.T.1    Struhl, K.2    Davis, R.W.3
  • 4
    • 0027261235 scopus 로고
    • Location characterization of autonomously replicating sequences from chromosome VI of Saccharomyces cerevisiae
    • Shirahige,K., Iwasaki,T., Rashid,M.B., Ogasawara,N. and Yoshikawa,H. (1993) Location and characterization of autonomously replicating sequences from chromosome VI of Saccharomyces cerevisiae. Mol. Cell. Biol., 13, 5043-5056.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 5043-5056
    • Shirahige, K.1    Iwasaki, T.2    Rashid, M.B.3    Ogasawara, N.4    Yoshikawa, H.5
  • 5
    • 0023646792 scopus 로고
    • The localization of replication origins on ARS plasmids in S.cerevisiae
    • Brewer,B.J. and Fangman,W.L. (1987) The localization of replication origins on ARS plasmids in S.cerevisiae. Cell, 51, 463-471.
    • (1987) Cell , vol.51 , pp. 463-471
    • Brewer, B.J.1    Fangman, W.L.2
  • 6
    • 0031265756 scopus 로고    scopus 로고
    • Replication profile of Saccharomyces cerevisiae chromosome VI
    • Friedman,K.L., Brewer,B.J. and Fangman,W.L. (1997) Replication profile of Saccharomyces cerevisiae chromosome VI. Genes Cells, 2, 667-678.
    • (1997) Genes Cells , vol.2 , pp. 667-678
    • Friedman, K.L.1    Brewer, B.J.2    Fangman, W.L.3
  • 8
    • 0031261584 scopus 로고    scopus 로고
    • The efficiency timing of initiation of replication of multiple replicons of Saccharomyces cerevisiae chromosome VI
    • Yamashita,M., Hori,Y., Shinomiya,T., Obuse,C., Tsurimoto,T., Yoshikawa,H. and Shirahige,K. (1997) The efficiency and timing of initiation of replication of multiple replicons of Saccharomyces cerevisiae chromosome VI. Genes Cells, 2, 655-665.
    • (1997) Genes Cells , vol.2 , pp. 655-665
    • Yamashita, M.1    Hori, Y.2    Shinomiya, T.3    Obuse, C.4    Tsurimoto, T.5    Yoshikawa, H.6    Shirahige, K.7
  • 10
    • 0026645944 scopus 로고
    • Localization of a DNA replication origin termination zone on chromosome III of Saccharomyces cerevisiae
    • Zhu,J., Newlon,C.S. and Huberman,J.A. (1992) Localization of a DNA replication origin and termination zone on chromosome III of Saccharomyces cerevisiae. Mol. Cell. Biol., 12, 4733-4741.
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 4733-4741
    • Zhu, J.1    Newlon, C.S.2    Huberman, J.A.3
  • 11
    • 0026645804 scopus 로고
    • The arrest of replication forks in the rDNA of yeast occurs independently of transcription
    • Brewer,B.J., Lockshon,D. and Fangman,W.L. (1992) The arrest of replication forks in the rDNA of yeast occurs independently of transcription. Cell, 71, 267-276.
    • (1992) Cell , vol.71 , pp. 267-276
    • Brewer, B.J.1    Lockshon, D.2    Fangman, W.L.3
  • 12
    • 33746101049 scopus 로고    scopus 로고
    • Genome-wide identification of replication origins in yeast by comparative genomics
    • Nieduszynski,C.A., Knox,Y. and Donaldson,A.D. (2006) Genome-wide identification of replication origins in yeast by comparative genomics. Genes Dev., 20, 1874-1879.
    • (2006) Genes Dev. , vol.20 , pp. 1874-1879
    • Nieduszynski, C.A.1    Knox, Y.2    Donaldson, A.D.3
  • 13
    • 0029000683 scopus 로고
    • Initiation complex assembly at budding yeast replication origins begins with the recognition of a bipartite sequence by limiting amounts of the initiator ORC
    • Rowley,A., Cocker,J.H., Harwood,J. and Diffley,J.F. (1995) Initiation complex assembly at budding yeast replication origins begins with the recognition of a bipartite sequence by limiting amounts of the initiator, ORC. EMBO J., 14, 2631-2641.
    • (1995) EMBO J. , vol.14 , pp. 2631-2641
    • Rowley, A.1    Cocker, J.H.2    Harwood, J.3    Diffley, J.F.4
  • 14
    • 0028928194 scopus 로고
    • The origin recognition complex interacts with a bipartite DNA binding site within yeast replicators
    • Rao,H. and Stillman,B. (1995) The origin recognition complex interacts with a bipartite DNA binding site within yeast replicators. Proc. Natl Acad. Sci. USA, 92, 2224-2228.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 2224-2228
    • Rao, H.1    Stillman, B.2
  • 15
    • 0030712877 scopus 로고    scopus 로고
    • Architecture of the yeast origin recognition complex bound to origins of DNA replication
    • Lee,D.G. and Bell,S.P. (1997) Architecture of the yeast origin recognition complex bound to origins of DNA replication. Mol. Cell. Biol, 17, 7159-7168.
    • (1997) Mol. Cell. Biol , vol.17 , pp. 7159-7168
    • Lee, D.G.1    Bell, S.P.2
  • 16
    • 4544221279 scopus 로고    scopus 로고
    • Regulation of early events in chromosome replication
    • Diffley,J.F. (2004) Regulation of early events in chromosome replication. Curr. Biol., 14, R778-R786.
    • (2004) Curr. Biol. , vol.14
    • Diffley, J.F.1
  • 17
    • 0034004129 scopus 로고    scopus 로고
    • Assembly of a complex containing Cdc45p replication protein A Mcm2p at replication origins controlled by S-phase cyclin-dependent kinases Cdc7p-Dbf4p kinase
    • Zou,L. and Stillman,B. (2000) Assembly of a complex containing Cdc45p, replication protein A, and Mcm2p at replication origins controlled by S-phase cyclin-dependent kinases and Cdc7p-Dbf4p kinase. Mol. Cell. Biol., 20, 3086-3096.
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 3086-3096
    • Zou, L.1    Stillman, B.2
  • 18
    • 0037039460 scopus 로고    scopus 로고
    • The B2 element of the Saccharomyces cerevisiae ARS1 origin of replication requires specific sequences to facilitate pre-RC formation
    • Wilmes,G.M. and Bell,S.P. (2002) The B2 element of the Saccharomyces cerevisiae ARS1 origin of replication requires specific sequences to facilitate pre-RC formation. Proc. Natl Acad. Sci. USA, 99, 101-106.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 101-106
    • Wilmes, G.M.1    Bell, S.P.2
  • 19
    • 0035104474 scopus 로고    scopus 로고
    • Nucleosomes positioned by ORC facilitate the initiation of DNA replication
    • Lipford,J.R. and Bell,S.P. (2001) Nucleosomes positioned by ORC facilitate the initiation of DNA replication. Mol. Cell, 7, 21-30.
    • (2001) Mol. Cell , vol.7 , pp. 21-30
    • Lipford, J.R.1    Bell, S.P.2
  • 20
    • 0026508417 scopus 로고
    • A yeast chromosomal origin of DNA replication defined by multiple functional elements
    • Marahrens,Y. and Stillman,B. (1992) A yeast chromosomal origin of DNA replication defined by multiple functional elements. Science, 255, 817-823.
    • (1992) Science , vol.255 , pp. 817-823
    • Marahrens, Y.1    Stillman, B.2
  • 21
    • 0024297539 scopus 로고
    • The ease of DNA unwinding as a determinant of initiation at yeast replication origins
    • Umek,R.M. and Kowalski,D. (1988) The ease of DNA unwinding as a determinant of initiation at yeast replication origins. Cell, 52, 559-567.
    • (1988) Cell , vol.52 , pp. 559-567
    • Umek, R.M.1    Kowalski, D.2
  • 22
    • 0027267271 scopus 로고
    • Ease of DNA unwinding is a conserved property of yeast replication origins
    • Natale,D.A., Umek,R.M. and Kowalski,D. (1993) Ease of DNA unwinding is a conserved property of yeast replication origins. Nucleic Acids Res., 21, 555-560.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 555-560
    • Natale, D.A.1    Umek, R.M.2    Kowalski, D.3
  • 23
    • 55449111943 scopus 로고    scopus 로고
    • Susceptibility to superhelically driven DNA duplex destabilization: A highly conserved property of yeast replication origins
    • Ak,P. and Benham,C.J. (2005) Susceptibility to superhelically driven DNA duplex destabilization: A highly conserved property of yeast replication origins. PLoS Comput. Biol., 1, e7.
    • (2005) PLoS Comput. Biol. , vol.1
    • Ak, P.1    Benham, C.J.2
  • 25
    • 0036668464 scopus 로고    scopus 로고
    • Mapping of early firing origins on a replication profile of budding yeast
    • Yabuki,N., Terashima,H. and Kitada,K. (2002) Mapping of early firing origins on a replication profile of budding yeast. Genes Cells, 7, 781-789.
    • (2002) Genes Cells , vol.7 , pp. 781-789
    • Yabuki, N.1    Terashima, H.2    Kitada, K.3
  • 26
    • 0035861492 scopus 로고    scopus 로고
    • Genome-wide distribution of ORC MCM proteins in S.cerevisiae: High-resolution mapping of replication origins
    • Wyrick,J.J., Aparicio,J.G., Chen,T., Barnett,J.D., Jennings,E.G., Young,R.A., Bell,S.P. and Aparicio,O.M. (2001) Genome-wide distribution of ORC and MCM proteins in S.cerevisiae: High-resolution mapping of replication origins. Science, 294, 2357-2360.
    • (2001) Science , vol.294 , pp. 2357-2360
    • Wyrick, J.J.1    Aparicio, J.G.2    Chen, T.3    Barnett, J.D.4    Jennings, E.G.5    Young, R.A.6    Bell, S.P.7    Aparicio, O.M.8
  • 30
    • 0025307434 scopus 로고
    • Mutational analysis of the consensus sequence of a replication origin from yeast chromosome III
    • Van Houten,J.V. and Newlon,C.S. (1990) Mutational analysis of the consensus sequence of a replication origin from yeast chromosome III. Mol. Cell. Biol., 10, 3917-3925.
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 3917-3925
    • Van Houten, J.V.1    Newlon, C.S.2
  • 31
    • 0030924440 scopus 로고    scopus 로고
    • The ARS309 chromosomal replicator of Saccharomyces cerevisiae depends on an exceptional ARS consensus sequence
    • Theis,J.F. and Newlon,C.S. (1997) The ARS309 chromosomal replicator of Saccharomyces cerevisiae depends on an exceptional ARS consensus sequence. Proc. Natl Acad. Sci. USA, 94, 10786-10791.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 10786-10791
    • Theis, J.F.1    Newlon, C.S.2
  • 32
    • 0035584142 scopus 로고    scopus 로고
    • Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication transcription initiation
    • Schneider,T.D. (2001) Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication and transcription initiation. Nucleic Acids Res., 29, 4881-4891.
    • (2001) Nucleic Acids Res. , vol.29 , Issue.32 , pp. 4881-4891
    • Schneider, T.D.1
  • 33
    • 0038349948 scopus 로고    scopus 로고
    • Sequencing comparison of yeast species to identify genes regulatory elements
    • Kellis,M., Patterson,N., Endrizzi,M., Birren,B. and Lander,E.S. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature, 423, 241-254.
    • (2003) Nature , vol.423 , pp. 241-254
    • Kellis, M.1    Patterson, N.2    Endrizzi, M.3    Birren, B.4    Lander, E.S.5
  • 36
    • 0347416973 scopus 로고    scopus 로고
    • Branch migrating sister chromatid junctions form at replication origins through Rad51/Rad52-independent mechanisms
    • Lopes,M., Cotta-Ramusino,C., Liberi,G. and Foiani,M. (2003) Branch migrating sister chromatid junctions form at replication origins through Rad51/Rad52-independent mechanisms. Mol. Cell, 12, 1499-1510.
    • (2003) Mol. Cell , vol.12 , pp. 1499-1510
    • Lopes, M.1    Cotta-Ramusino, C.2    Liberi, G.3    Foiani, M.4
  • 37
    • 3142760095 scopus 로고    scopus 로고
    • The origin recognition complex links replication sister chromatid cohesion transcriptional silencing in Saccharomyces cerevisiae
    • Suter,B., Tong,A., Chang,M., Yu,L., Brown,G.W., Boone,C. and Rine,J. (2004) The origin recognition complex links replication, sister chromatid cohesion and transcriptional silencing in Saccharomyces cerevisiae. Genetics, 167, 579-591.
    • (2004) Genetics , vol.167 , pp. 579-591
    • Suter, B.1    Tong, A.2    Chang, M.3    Yu, L.4    Brown, G.W.5    Boone, C.6    Rine, J.7
  • 39
    • 17844364938 scopus 로고    scopus 로고
    • The requirement of yeast replication origins for pre-replication complex proteins is modulated by transcription
    • Nieduszynski,C.A., Blow,J.J. and Donaldson,A.D. (2005) The requirement of yeast replication origins for pre-replication complex proteins is modulated by transcription. Nucleic Acids Res., 33, 2410-2420.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2410-2420
    • Nieduszynski, C.A.1    Blow, J.J.2    Donaldson, A.D.3
  • 40
    • 0036863542 scopus 로고    scopus 로고
    • Histone acetylation regulates the time of replication origin firing
    • Vogelauer,M., Rubbi,L., Lucas,I., Brewer,B.J. and Grunstein,M. (2002) Histone acetylation regulates the time of replication origin firing. Mol. Cell, 10, 1223-1233.
    • (2002) Mol. Cell , vol.10 , pp. 1223-1233
    • Vogelauer, M.1    Rubbi, L.2    Lucas, I.3    Brewer, B.J.4    Grunstein, M.5
  • 41
    • 0036791764 scopus 로고    scopus 로고
    • Ku complex controls the replication time of DNA in telomere regions
    • Cosgrove,A.J., Nieduszynski,C.A. and Donaldson,A.D. (2002) Ku complex controls the replication time of DNA in telomere regions. Genes Dev., 16, 2485-2490.
    • (2002) Genes Dev. , vol.16 , pp. 2485-2490
    • Cosgrove, A.J.1    Nieduszynski, C.A.2    Donaldson, A.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.