-
1
-
-
23444434202
-
A genomic view of eukaryotic DNA replication
-
MacAlpine,D.M. and Bell,S.P. (2005) A genomic view of eukaryotic DNA replication. Chromosome Res., 13, 309-326.
-
(2005)
Chromosome Res.
, vol.13
, pp. 309-326
-
-
MacAlpine, D.M.1
Bell, S.P.2
-
2
-
-
0018671664
-
Isolation characterisation of a yeast chromosomal replicator
-
Stinchcomb,D.T., Struhl,K. and Davis,R.W. (1979) Isolation and characterisation of a yeast chromosomal replicator. Nature, 282, 39-43.
-
(1979)
Nature
, vol.282
, pp. 39-43
-
-
Stinchcomb, D.T.1
Struhl, K.2
Davis, R.W.3
-
3
-
-
0027894191
-
Analysis of replication origin function on chromosome III of Saccharomyces cerevisiae
-
Newlon,C.S., Collins,I., Dershowitz,A., Deshpande,A.M., Greenfeder,S.A., Ong,L.Y. and Theis,J.F. (1993) Analysis of replication origin function on chromosome III of Saccharomyces cerevisiae. Cold Spring Harb. Symp. Quant. Biol., 58, 415-423.
-
(1993)
Cold Spring Harb. Symp. Quant. Biol.
, vol.58
, pp. 415-423
-
-
Newlon, C.S.1
Collins, I.2
Dershowitz, A.3
Deshpande, A.M.4
Greenfeder, S.A.5
Ong, L.Y.6
Theis, J.F.7
-
4
-
-
0027261235
-
Location characterization of autonomously replicating sequences from chromosome VI of Saccharomyces cerevisiae
-
Shirahige,K., Iwasaki,T., Rashid,M.B., Ogasawara,N. and Yoshikawa,H. (1993) Location and characterization of autonomously replicating sequences from chromosome VI of Saccharomyces cerevisiae. Mol. Cell. Biol., 13, 5043-5056.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 5043-5056
-
-
Shirahige, K.1
Iwasaki, T.2
Rashid, M.B.3
Ogasawara, N.4
Yoshikawa, H.5
-
5
-
-
0023646792
-
The localization of replication origins on ARS plasmids in S.cerevisiae
-
Brewer,B.J. and Fangman,W.L. (1987) The localization of replication origins on ARS plasmids in S.cerevisiae. Cell, 51, 463-471.
-
(1987)
Cell
, vol.51
, pp. 463-471
-
-
Brewer, B.J.1
Fangman, W.L.2
-
6
-
-
0031265756
-
Replication profile of Saccharomyces cerevisiae chromosome VI
-
Friedman,K.L., Brewer,B.J. and Fangman,W.L. (1997) Replication profile of Saccharomyces cerevisiae chromosome VI. Genes Cells, 2, 667-678.
-
(1997)
Genes Cells
, vol.2
, pp. 667-678
-
-
Friedman, K.L.1
Brewer, B.J.2
Fangman, W.L.3
-
7
-
-
23944462969
-
Genome-wide map of nucleosome acetylation methylation in yeast
-
Pokholok,D.K., Harbison,C.T., Levine,S., Cole,M., Hannett,N.M., Lee,T.I., Bell,G.W., Walker,K., Rolfe,P.A., Herbolsheimer,E. et al. (2005) Genome-wide map of nucleosome acetylation and methylation in yeast. Cell, 122, 517-527.
-
(2005)
Cell
, vol.122
, pp. 517-527
-
-
Pokholok, D.K.1
Harbison, C.T.2
Levine, S.3
Cole, M.4
Hannett, N.M.5
Lee, T.I.6
Bell, G.W.7
Walker, K.8
Rolfe, P.A.9
Herbolsheimer, E.10
-
8
-
-
0031261584
-
The efficiency timing of initiation of replication of multiple replicons of Saccharomyces cerevisiae chromosome VI
-
Yamashita,M., Hori,Y., Shinomiya,T., Obuse,C., Tsurimoto,T., Yoshikawa,H. and Shirahige,K. (1997) The efficiency and timing of initiation of replication of multiple replicons of Saccharomyces cerevisiae chromosome VI. Genes Cells, 2, 655-665.
-
(1997)
Genes Cells
, vol.2
, pp. 655-665
-
-
Yamashita, M.1
Hori, Y.2
Shinomiya, T.3
Obuse, C.4
Tsurimoto, T.5
Yoshikawa, H.6
Shirahige, K.7
-
9
-
-
0023646749
-
The in vivo replication origin of the yeast 2 microns plasmid
-
Huberman,J.A., Spotila,L.D., Nawotka,K.A., el-Assouli,S.M. and Davis,L.R. (1987) The in vivo replication origin of the yeast 2 microns plasmid. Cell, 51, 473-481.
-
(1987)
Cell
, vol.51
, pp. 473-481
-
-
Huberman, J.A.1
Spotila, L.D.2
Nawotka, K.A.3
el-Assouli, S.M.4
Davis, L.R.5
-
10
-
-
0026645944
-
Localization of a DNA replication origin termination zone on chromosome III of Saccharomyces cerevisiae
-
Zhu,J., Newlon,C.S. and Huberman,J.A. (1992) Localization of a DNA replication origin and termination zone on chromosome III of Saccharomyces cerevisiae. Mol. Cell. Biol., 12, 4733-4741.
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 4733-4741
-
-
Zhu, J.1
Newlon, C.S.2
Huberman, J.A.3
-
11
-
-
0026645804
-
The arrest of replication forks in the rDNA of yeast occurs independently of transcription
-
Brewer,B.J., Lockshon,D. and Fangman,W.L. (1992) The arrest of replication forks in the rDNA of yeast occurs independently of transcription. Cell, 71, 267-276.
-
(1992)
Cell
, vol.71
, pp. 267-276
-
-
Brewer, B.J.1
Lockshon, D.2
Fangman, W.L.3
-
12
-
-
33746101049
-
Genome-wide identification of replication origins in yeast by comparative genomics
-
Nieduszynski,C.A., Knox,Y. and Donaldson,A.D. (2006) Genome-wide identification of replication origins in yeast by comparative genomics. Genes Dev., 20, 1874-1879.
-
(2006)
Genes Dev.
, vol.20
, pp. 1874-1879
-
-
Nieduszynski, C.A.1
Knox, Y.2
Donaldson, A.D.3
-
13
-
-
0029000683
-
Initiation complex assembly at budding yeast replication origins begins with the recognition of a bipartite sequence by limiting amounts of the initiator ORC
-
Rowley,A., Cocker,J.H., Harwood,J. and Diffley,J.F. (1995) Initiation complex assembly at budding yeast replication origins begins with the recognition of a bipartite sequence by limiting amounts of the initiator, ORC. EMBO J., 14, 2631-2641.
-
(1995)
EMBO J.
, vol.14
, pp. 2631-2641
-
-
Rowley, A.1
Cocker, J.H.2
Harwood, J.3
Diffley, J.F.4
-
14
-
-
0028928194
-
The origin recognition complex interacts with a bipartite DNA binding site within yeast replicators
-
Rao,H. and Stillman,B. (1995) The origin recognition complex interacts with a bipartite DNA binding site within yeast replicators. Proc. Natl Acad. Sci. USA, 92, 2224-2228.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 2224-2228
-
-
Rao, H.1
Stillman, B.2
-
15
-
-
0030712877
-
Architecture of the yeast origin recognition complex bound to origins of DNA replication
-
Lee,D.G. and Bell,S.P. (1997) Architecture of the yeast origin recognition complex bound to origins of DNA replication. Mol. Cell. Biol, 17, 7159-7168.
-
(1997)
Mol. Cell. Biol
, vol.17
, pp. 7159-7168
-
-
Lee, D.G.1
Bell, S.P.2
-
16
-
-
4544221279
-
Regulation of early events in chromosome replication
-
Diffley,J.F. (2004) Regulation of early events in chromosome replication. Curr. Biol., 14, R778-R786.
-
(2004)
Curr. Biol.
, vol.14
-
-
Diffley, J.F.1
-
17
-
-
0034004129
-
Assembly of a complex containing Cdc45p replication protein A Mcm2p at replication origins controlled by S-phase cyclin-dependent kinases Cdc7p-Dbf4p kinase
-
Zou,L. and Stillman,B. (2000) Assembly of a complex containing Cdc45p, replication protein A, and Mcm2p at replication origins controlled by S-phase cyclin-dependent kinases and Cdc7p-Dbf4p kinase. Mol. Cell. Biol., 20, 3086-3096.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 3086-3096
-
-
Zou, L.1
Stillman, B.2
-
18
-
-
0037039460
-
The B2 element of the Saccharomyces cerevisiae ARS1 origin of replication requires specific sequences to facilitate pre-RC formation
-
Wilmes,G.M. and Bell,S.P. (2002) The B2 element of the Saccharomyces cerevisiae ARS1 origin of replication requires specific sequences to facilitate pre-RC formation. Proc. Natl Acad. Sci. USA, 99, 101-106.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 101-106
-
-
Wilmes, G.M.1
Bell, S.P.2
-
19
-
-
0035104474
-
Nucleosomes positioned by ORC facilitate the initiation of DNA replication
-
Lipford,J.R. and Bell,S.P. (2001) Nucleosomes positioned by ORC facilitate the initiation of DNA replication. Mol. Cell, 7, 21-30.
-
(2001)
Mol. Cell
, vol.7
, pp. 21-30
-
-
Lipford, J.R.1
Bell, S.P.2
-
20
-
-
0026508417
-
A yeast chromosomal origin of DNA replication defined by multiple functional elements
-
Marahrens,Y. and Stillman,B. (1992) A yeast chromosomal origin of DNA replication defined by multiple functional elements. Science, 255, 817-823.
-
(1992)
Science
, vol.255
, pp. 817-823
-
-
Marahrens, Y.1
Stillman, B.2
-
21
-
-
0024297539
-
The ease of DNA unwinding as a determinant of initiation at yeast replication origins
-
Umek,R.M. and Kowalski,D. (1988) The ease of DNA unwinding as a determinant of initiation at yeast replication origins. Cell, 52, 559-567.
-
(1988)
Cell
, vol.52
, pp. 559-567
-
-
Umek, R.M.1
Kowalski, D.2
-
22
-
-
0027267271
-
Ease of DNA unwinding is a conserved property of yeast replication origins
-
Natale,D.A., Umek,R.M. and Kowalski,D. (1993) Ease of DNA unwinding is a conserved property of yeast replication origins. Nucleic Acids Res., 21, 555-560.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 555-560
-
-
Natale, D.A.1
Umek, R.M.2
Kowalski, D.3
-
23
-
-
55449111943
-
Susceptibility to superhelically driven DNA duplex destabilization: A highly conserved property of yeast replication origins
-
Ak,P. and Benham,C.J. (2005) Susceptibility to superhelically driven DNA duplex destabilization: A highly conserved property of yeast replication origins. PLoS Comput. Biol., 1, e7.
-
(2005)
PLoS Comput. Biol.
, vol.1
-
-
Ak, P.1
Benham, C.J.2
-
24
-
-
0035812808
-
Replication dynamics of the yeast genome
-
Raghuraman,M.K., Winzeler,E.A., Collingwood,D., Hunt,S., Wodicka,L., Conway,A., Lockhart,D.J., Davis,R.W., Brewer,B.J. and Fangman,W.L. (2001) Replication dynamics of the yeast genome. Science, 294, 115-121.
-
(2001)
Science
, vol.294
, pp. 115-121
-
-
Raghuraman, M.K.1
Winzeler, E.A.2
Collingwood, D.3
Hunt, S.4
Wodicka, L.5
Conway, A.6
Lockhart, D.J.7
Davis, R.W.8
Brewer, B.J.9
Fangman, W.L.10
-
25
-
-
0036668464
-
Mapping of early firing origins on a replication profile of budding yeast
-
Yabuki,N., Terashima,H. and Kitada,K. (2002) Mapping of early firing origins on a replication profile of budding yeast. Genes Cells, 7, 781-789.
-
(2002)
Genes Cells
, vol.7
, pp. 781-789
-
-
Yabuki, N.1
Terashima, H.2
Kitada, K.3
-
26
-
-
0035861492
-
Genome-wide distribution of ORC MCM proteins in S.cerevisiae: High-resolution mapping of replication origins
-
Wyrick,J.J., Aparicio,J.G., Chen,T., Barnett,J.D., Jennings,E.G., Young,R.A., Bell,S.P. and Aparicio,O.M. (2001) Genome-wide distribution of ORC and MCM proteins in S.cerevisiae: High-resolution mapping of replication origins. Science, 294, 2357-2360.
-
(2001)
Science
, vol.294
, pp. 2357-2360
-
-
Wyrick, J.J.1
Aparicio, J.G.2
Chen, T.3
Barnett, J.D.4
Jennings, E.G.5
Young, R.A.6
Bell, S.P.7
Aparicio, O.M.8
-
27
-
-
33645152790
-
Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication
-
Feng,W., Collingwood,D., Boeck,M.E., Fox,L.A., Alvino,G.M., Fangman,W.L., Raghuraman,M.K. and Brewer,B.J. (2006) Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication. Nat. Cell. Biol., 8, 148-155.
-
(2006)
Nat. Cell. Biol.
, vol.8
, pp. 148-155
-
-
Feng, W.1
Collingwood, D.2
Boeck, M.E.3
Fox, L.A.4
Alvino, G.M.5
Fangman, W.L.6
Raghuraman, M.K.7
Brewer, B.J.8
-
28
-
-
33644874573
-
The UCSC Genome Browser Database: Update 2006
-
Hinrichs,A.S., Karolchik,D., Baertsch,R., Barber,G.P., Bejerano,G., Clawson,H., Diekhans,M., Furey,T.S., Harte,R.A., Hsu,F. et al. (2006) The UCSC Genome Browser Database: Update 2006. Nucleic Acids Res., 34, D590-598.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Hinrichs, A.S.1
Karolchik, D.2
Baertsch, R.3
Barber, G.P.4
Bejerano, G.5
Clawson, H.6
Diekhans, M.7
Furey, T.S.8
Harte, R.A.9
Hsu, F.10
-
29
-
-
33644877905
-
Genome Snapshot: A new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome
-
Hirschman,J.E., Balakrishnan,R., Christie,K.R., Costanzo,M.C., Dwight,S.S., Engel,S.R., Fisk,D.G., Hong,E.L., Livstone,M.S., Nash,R. et al. (2006) Genome Snapshot: A new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome. Nucleic Acids Res., 34, D442-D445.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Hirschman, J.E.1
Balakrishnan, R.2
Christie, K.R.3
Costanzo, M.C.4
Dwight, S.S.5
Engel, S.R.6
Fisk, D.G.7
Hong, E.L.8
Livstone, M.S.9
Nash, R.10
-
30
-
-
0025307434
-
Mutational analysis of the consensus sequence of a replication origin from yeast chromosome III
-
Van Houten,J.V. and Newlon,C.S. (1990) Mutational analysis of the consensus sequence of a replication origin from yeast chromosome III. Mol. Cell. Biol., 10, 3917-3925.
-
(1990)
Mol. Cell. Biol.
, vol.10
, pp. 3917-3925
-
-
Van Houten, J.V.1
Newlon, C.S.2
-
31
-
-
0030924440
-
The ARS309 chromosomal replicator of Saccharomyces cerevisiae depends on an exceptional ARS consensus sequence
-
Theis,J.F. and Newlon,C.S. (1997) The ARS309 chromosomal replicator of Saccharomyces cerevisiae depends on an exceptional ARS consensus sequence. Proc. Natl Acad. Sci. USA, 94, 10786-10791.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 10786-10791
-
-
Theis, J.F.1
Newlon, C.S.2
-
32
-
-
0035584142
-
Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication transcription initiation
-
Schneider,T.D. (2001) Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication and transcription initiation. Nucleic Acids Res., 29, 4881-4891.
-
(2001)
Nucleic Acids Res.
, vol.29
, Issue.32
, pp. 4881-4891
-
-
Schneider, T.D.1
-
33
-
-
0038349948
-
Sequencing comparison of yeast species to identify genes regulatory elements
-
Kellis,M., Patterson,N., Endrizzi,M., Birren,B. and Lander,E.S. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature, 423, 241-254.
-
(2003)
Nature
, vol.423
, pp. 241-254
-
-
Kellis, M.1
Patterson, N.2
Endrizzi, M.3
Birren, B.4
Lander, E.S.5
-
34
-
-
0038724989
-
Finding functional features in Saccharomyces genomes by phylogenetic footprinting
-
Cliften,P., Sudarsanam,P., Desikan,A., Fulton,L., Fulton,B., Majors,J., Waterston,R., Cohen,B.A. and Johnston,M. (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science, 301, 71-76.
-
(2003)
Science
, vol.301
, pp. 71-76
-
-
Cliften, P.1
Sudarsanam, P.2
Desikan, A.3
Fulton, L.4
Fulton, B.5
Majors, J.6
Waterston, R.7
Cohen, B.A.8
Johnston, M.9
-
35
-
-
33644876253
-
Database resources of the National Center for Biotechnology Information
-
Wheeler,D.L., Barrett,T., Benson,D.A., Bryant,S.H., Canese,K., Chetvernin,V., Church,D.M., DiCuccio,M., Edgar,R., Federhen,S. et al. (2006) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 34, D173-D180.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Wheeler, D.L.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
Chetvernin, V.6
Church, D.M.7
DiCuccio, M.8
Edgar, R.9
Federhen, S.10
-
36
-
-
0347416973
-
Branch migrating sister chromatid junctions form at replication origins through Rad51/Rad52-independent mechanisms
-
Lopes,M., Cotta-Ramusino,C., Liberi,G. and Foiani,M. (2003) Branch migrating sister chromatid junctions form at replication origins through Rad51/Rad52-independent mechanisms. Mol. Cell, 12, 1499-1510.
-
(2003)
Mol. Cell
, vol.12
, pp. 1499-1510
-
-
Lopes, M.1
Cotta-Ramusino, C.2
Liberi, G.3
Foiani, M.4
-
37
-
-
3142760095
-
The origin recognition complex links replication sister chromatid cohesion transcriptional silencing in Saccharomyces cerevisiae
-
Suter,B., Tong,A., Chang,M., Yu,L., Brown,G.W., Boone,C. and Rine,J. (2004) The origin recognition complex links replication, sister chromatid cohesion and transcriptional silencing in Saccharomyces cerevisiae. Genetics, 167, 579-591.
-
(2004)
Genetics
, vol.167
, pp. 579-591
-
-
Suter, B.1
Tong, A.2
Chang, M.3
Yu, L.4
Brown, G.W.5
Boone, C.6
Rine, J.7
-
38
-
-
19344366459
-
Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae
-
Glynn,E.F., Megee,P.C., Yu,H.G., Mistrot,C., Unal,E., Koshland,D.E., DeRisi,J.L. and Gerton,J.L. (2004) Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae. PLoS Biol, 2, E259.
-
(2004)
PLoS Biol
, vol.2
-
-
Glynn, E.F.1
Megee, P.C.2
Yu, H.G.3
Mistrot, C.4
Unal, E.5
Koshland, D.E.6
DeRisi, J.L.7
Gerton, J.L.8
-
39
-
-
17844364938
-
The requirement of yeast replication origins for pre-replication complex proteins is modulated by transcription
-
Nieduszynski,C.A., Blow,J.J. and Donaldson,A.D. (2005) The requirement of yeast replication origins for pre-replication complex proteins is modulated by transcription. Nucleic Acids Res., 33, 2410-2420.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2410-2420
-
-
Nieduszynski, C.A.1
Blow, J.J.2
Donaldson, A.D.3
-
40
-
-
0036863542
-
Histone acetylation regulates the time of replication origin firing
-
Vogelauer,M., Rubbi,L., Lucas,I., Brewer,B.J. and Grunstein,M. (2002) Histone acetylation regulates the time of replication origin firing. Mol. Cell, 10, 1223-1233.
-
(2002)
Mol. Cell
, vol.10
, pp. 1223-1233
-
-
Vogelauer, M.1
Rubbi, L.2
Lucas, I.3
Brewer, B.J.4
Grunstein, M.5
-
41
-
-
0036791764
-
Ku complex controls the replication time of DNA in telomere regions
-
Cosgrove,A.J., Nieduszynski,C.A. and Donaldson,A.D. (2002) Ku complex controls the replication time of DNA in telomere regions. Genes Dev., 16, 2485-2490.
-
(2002)
Genes Dev.
, vol.16
, pp. 2485-2490
-
-
Cosgrove, A.J.1
Nieduszynski, C.A.2
Donaldson, A.D.3
|