-
1
-
-
0032568655
-
SMART, a simple modular architecture research tool: Identification of signaling domains
-
Schultz, J., Milpetz, F., Bork, P., and Ponting, C. P. (1998) SMART, a simple modular architecture research tool: identification of signaling domains. Proc. Natl. Acad. Sci. U.S.A. 95, 5857-5864
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 5857-5864
-
-
Schultz, J.1
Milpetz, F.2
Bork, P.3
Ponting, C.P.4
-
2
-
-
58549092371
-
Organization and dynamics of PDZ-domain-related supramodules in the postsynaptic density
-
Feng, W., and Zhang, M. (2009) Organization and dynamics of PDZ-domain-related supramodules in the postsynaptic density. Nat. Rev. 10, 87-99
-
(2009)
Nat. Rev.
, vol.10
, pp. 87-99
-
-
Feng, W.1
Zhang, M.2
-
3
-
-
84884245462
-
Structures and target recognition modes of PDZ domains: Recurring themes and emerging pictures
-
Ye, F., and Zhang, M. (2013) Structures and target recognition modes of PDZ domains: recurring themes and emerging pictures. Biochem. J. 455, 1-14
-
(2013)
Biochem. J.
, vol.455
, pp. 1-14
-
-
Ye, F.1
Zhang, M.2
-
4
-
-
0034916230
-
PDZ domains and the organization of supramolecular complexes
-
Sheng, M., and Sala, C. (2001) PDZ domains and the organization of supramolecular complexes. Annu. Rev. Neurosci. 24, 1-29
-
(2001)
Annu. Rev. Neurosci.
, vol.24
, pp. 1-29
-
-
Sheng, M.1
Sala, C.2
-
5
-
-
34547127612
-
PDZ domain binding selectivity is optimized across the mouse proteome
-
Stiffler, M. A., Chen, J. R., Grantcharova, V. P., Lei, Y., Fuchs, D., Allen, J. E., Zaslavskaia, L. A., and MacBeath, G. (2007) PDZ domain binding selectivity is optimized across the mouse proteome. Science 317, 364-369
-
(2007)
Science
, vol.317
, pp. 364-369
-
-
Stiffler, M.A.1
Chen, J.R.2
Grantcharova, V.P.3
Lei, Y.4
Fuchs, D.5
Allen, J.E.6
Zaslavskaia, L.A.7
MacBeath, G.8
-
6
-
-
84868365613
-
The spatial architecture of protein function and adaptation
-
McLaughlin, R. N., Jr., Poelwijk, F. J., Raman, A., Gosal, W. S., and Ranganathan, R. (2012) The spatial architecture of protein function and adaptation. Nature 491, 138-142
-
(2012)
Nature
, vol.491
, pp. 138-142
-
-
McLaughlin, R.N.1
Poelwijk, F.J.2
Raman, A.3
Gosal, W.S.4
Ranganathan, R.5
-
7
-
-
54749086397
-
A specificity map for the PDZ domain family
-
Tonikian, R., Zhang, Y., Sazinsky, S. L., Currell, B., Yeh, J. H., Reva, B., Held, H. A., Appleton, B. A., Evangelista, M., Wu, Y., Xin, X., Chan, A. C., Seshagiri, S., Lasky, L. A., Sander, C., Boone, C., Bader, G. D., and Sidhu, S. S. (2008) A specificity map for the PDZ domain family. PLoS Biol. 6, e239
-
(2008)
PLoS Biol.
, vol.6
, pp. e239
-
-
Tonikian, R.1
Zhang, Y.2
Sazinsky, S.L.3
Currell, B.4
Yeh, J.H.5
Reva, B.6
Held, H.A.7
Appleton, B.A.8
Evangelista, M.9
Wu, Y.10
Xin, X.11
Chan, A.C.12
Seshagiri, S.13
Lasky, L.A.14
Sander, C.15
Boone, C.16
Bader, G.D.17
Sidhu, S.S.18
-
8
-
-
15644379801
-
Recognition of unique carboxyl-terminal motifs by distinct PDZ domains
-
Songyang, Z., Fanning, A. S., Fu, C., Xu, J., Marfatia, S. M., Chishti, A. H., Crompton, A., Chan, A. C., Anderson, J. M., and Cantley, L. C. (1997) Recognition of unique carboxyl-terminal motifs by distinct PDZ domains. Science 275, 73-77
-
(1997)
Science
, vol.275
, pp. 73-77
-
-
Songyang, Z.1
Fanning, A.S.2
Fu, C.3
Xu, J.4
Marfatia, S.M.5
Chishti, A.H.6
Crompton, A.7
Chan, A.C.8
Anderson, J.M.9
Cantley, L.C.10
-
9
-
-
0035861856
-
Classification of PDZ domains
-
Bezprozvanny, I., and Maximov, A. (2001) Classification of PDZ domains. FEBS Lett. 509, 457-462
-
(2001)
FEBS Lett.
, vol.509
, pp. 457-462
-
-
Bezprozvanny, I.1
Maximov, A.2
-
10
-
-
0031960011
-
Crystal structure of the hCASK PDZ domain reveals the structural basis of class II PDZ domain target recognition
-
Daniels, D. L., Cohen, A. R., Anderson, J. M., and Brünger, A. T. (1998) Crystal structure of the hCASK PDZ domain reveals the structural basis of class II PDZ domain target recognition. Nat. Struct. Biol. 5, 317-325
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 317-325
-
-
Daniels, D.L.1
Cohen, A.R.2
Anderson, J.M.3
Brünger, A.T.4
-
11
-
-
0030895195
-
PDZ domain of neuronal nitric oxide synthase recognizes novel C-terminal peptide sequences
-
Stricker, N. L., Christopherson, K. S., Yi, B. A., Schatz, P. J., Raab, R. W., Dawes, G., Bassett, D. E., Jr., Bredt, D. S., and Li, M. (1997) PDZ domain of neuronal nitric oxide synthase recognizes novel C-terminal peptide sequences. Nat. Biotechnol. 15, 336-342
-
(1997)
Nat. Biotechnol.
, vol.15
, pp. 336-342
-
-
Stricker, N.L.1
Christopherson, K.S.2
Yi, B.A.3
Schatz, P.J.4
Raab, R.W.5
Dawes, G.6
Bassett, D.E.7
Bredt, D.S.8
Li, M.9
-
12
-
-
84876997106
-
PICK1 and ICA69 control insulin granule trafficking and their deficiencies lead to impaired glucose tolerance
-
Cao, M., Mao, Z., Kam, C., Xiao, N., Cao, X., Shen, C., Cheng, K. K., Xu, A., Lee, K. M., Jiang, L., and Xia, J. (2013) PICK1 and ICA69 control insulin granule trafficking and their deficiencies lead to impaired glucose tolerance. PLoS Biol. 11, e1001541
-
(2013)
PLoS Biol.
, vol.11
, pp. e1001541
-
-
Cao, M.1
Mao, Z.2
Kam, C.3
Xiao, N.4
Cao, X.5
Shen, C.6
Cheng, K.K.7
Xu, A.8
Lee, K.M.9
Jiang, L.10
Xia, J.11
-
13
-
-
84876967040
-
PICK1 deficiency impairs secretory vesicle biogenesis and leads to growth retardation and decreased glucose tolerance
-
Holst, B., Madsen, K. L., Jansen, A. M., Jin, C., Rickhag, M., Lund, V. K., Jensen, M., Bhatia, V., Sørensen, G., Madsen, A. N., Xue, Z., Møller, S. K., Woldbye, D., Qvortrup, K., Huganir, R., Stamou, D., Kjærulff, O., and Gether, U. (2013) PICK1 deficiency impairs secretory vesicle biogenesis and leads to growth retardation and decreased glucose tolerance. PLoS Biol. 11, e1001542
-
(2013)
PLoS Biol.
, vol.11
, pp. e1001542
-
-
Holst, B.1
Madsen, K.L.2
Jansen, A.M.3
Jin, C.4
Rickhag, M.5
Lund, V.K.6
Jensen, M.7
Bhatia, V.8
Sørensen, G.9
Madsen, A.N.10
Xue, Z.11
Møller, S.K.12
Woldbye, D.13
Qvortrup, K.14
Huganir, R.15
Stamou, D.16
Kjærulff, O.17
Gether, U.18
-
14
-
-
23044457365
-
PICK1 interacts with ABP/GRIP to regulate AMPA receptor trafficking
-
Lu, W., and Ziff, E. B. (2005) PICK1 interacts with ABP/GRIP to regulate AMPA receptor trafficking. Neuron 47, 407-421
-
(2005)
Neuron
, vol.47
, pp. 407-421
-
-
Lu, W.1
Ziff, E.B.2
-
15
-
-
33644872978
-
Targeted in vivo mutations of the AMPA receptor subunit GluR2 and its interacting protein PICK1 eliminate cerebellar long-term depression
-
Steinberg, J. P., Takamiya, K., Shen, Y., Xia, J., Rubio, M. E., Yu, S., Jin, W., Thomas, G. M., Linden, D. J., and Huganir, R. L. (2006) Targeted in vivo mutations of the AMPA receptor subunit GluR2 and its interacting protein PICK1 eliminate cerebellar long-term depression. Neuron 49, 845-860
-
(2006)
Neuron
, vol.49
, pp. 845-860
-
-
Steinberg, J.P.1
Takamiya, K.2
Shen, Y.3
Xia, J.4
Rubio, M.E.5
Yu, S.6
Jin, W.7
Thomas, G.M.8
Linden, D.J.9
Huganir, R.L.10
-
16
-
-
36348963115
-
PICK1- ICA69 heteromeric BAR domain complex regulates synaptic targeting and surface expression of AMPA receptors
-
Cao, M., Xu, J., Shen, C., Kam, C., Huganir, R. L., and Xia, J. (2007) PICK1- ICA69 heteromeric BAR domain complex regulates synaptic targeting and surface expression of AMPA receptors. J. Neurosci. 27, 12945-12956
-
(2007)
J. Neurosci.
, vol.27
, pp. 12945-12956
-
-
Cao, M.1
Xu, J.2
Shen, C.3
Kam, C.4
Huganir, R.L.5
Xia, J.6
-
17
-
-
42649135851
-
PICK1: A multi-talented modulator of AMPA receptor trafficking
-
Hanley, J. G. (2008) PICK1: a multi-talented modulator of AMPA receptor trafficking. Pharmacol. Ther. 118, 152-160
-
(2008)
Pharmacol. Ther.
, vol.118
, pp. 152-160
-
-
Hanley, J.G.1
-
18
-
-
76249119763
-
Identification of a small-molecule inhibitor of the PICK1 PDZ domain that inhibits hippocampal LTP and LTD
-
Thorsen, T. S., Madsen, K. L., Rebola, N., Rathje, M., Anggono, V., Bach, A., Moreira, I. S., Stuhr-Hansen, N., Dyhring, T., Peters, D., Beuming, T., Huganir, R., Weinstein, H., Mulle, C., Strømgaard, K., Rønn, L. C., and Gether, U. (2010) Identification of a small-molecule inhibitor of the PICK1 PDZ domain that inhibits hippocampal LTP and LTD. Proc. Natl. Acad. Sci. U.S.A. 107, 413-418
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 413-418
-
-
Thorsen, T.S.1
Madsen, K.L.2
Rebola, N.3
Rathje, M.4
Anggono, V.5
Bach, A.6
Moreira, I.S.7
Stuhr-Hansen, N.8
Dyhring, T.9
Peters, D.10
Beuming, T.11
Huganir, R.12
Weinstein, H.13
Mulle, C.14
Strømgaard, K.15
Rønn, L.C.16
Gether, U.17
-
19
-
-
40849104800
-
An essential role for PICK1 in NMDA receptor-dependent bidirectional synaptic plasticity
-
Terashima, A., Pelkey, K. A., Rah, J. C., Suh, Y. H., Roche, K. W., Collingridge, G. L., McBain, C. J., and Isaac, J. T. (2008) An essential role for PICK1 in NMDA receptor-dependent bidirectional synaptic plasticity. Neuron 57, 872-882
-
(2008)
Neuron
, vol.57
, pp. 872-882
-
-
Terashima, A.1
Pelkey, K.A.2
Rah, J.C.3
Suh, Y.H.4
Roche, K.W.5
Collingridge, G.L.6
McBain, C.J.7
Isaac, J.T.8
-
20
-
-
0031465589
-
Specific interaction of the PDZ domain protein PICK1 with the COOH terminus of protein kinase C-α
-
Staudinger, J., Lu, J., and Olson, E. N. (1997) Specific interaction of the PDZ domain protein PICK1 with the COOH terminus of protein kinase C-α. J. Biol. Chem. 272, 32019-32024
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 32019-32024
-
-
Staudinger, J.1
Lu, J.2
Olson, E.N.3
-
21
-
-
0034307444
-
Phosphorylation of the AMPA receptor subunit GluR2 differentially regulates its interaction with PDZ domain-containing proteins
-
Chung, H. J., Xia, J., Scannevin, R. H., Zhang, X., and Huganir, R. L. (2000) Phosphorylation of the AMPA receptor subunit GluR2 differentially regulates its interaction with PDZ domain-containing proteins. J. Neurosci. 20, 7258-7267
-
(2000)
J. Neurosci.
, vol.20
, pp. 7258-7267
-
-
Chung, H.J.1
Xia, J.2
Scannevin, R.H.3
Zhang, X.4
Huganir, R.L.5
-
22
-
-
0033030234
-
The protein kinase Cα binding protein PICK1 interacts with short but not long form alternative splice variants of AMPA receptor subunits
-
Dev, K. K., Nishimune, A., Henley, J. M., and Nakanishi, S. (1999) The protein kinase Cα binding protein PICK1 interacts with short but not long form alternative splice variants of AMPA receptor subunits. Neuropharmacology 38, 635-644
-
(1999)
Neuropharmacology
, vol.38
, pp. 635-644
-
-
Dev, K.K.1
Nishimune, A.2
Henley, J.M.3
Nakanishi, S.4
-
23
-
-
0034307460
-
PICK1 interacts with and regulates PKC phosphorylation of mGLUR7
-
Dev, K. K., Nakajima, Y., Kitano, J., Braithwaite, S. P., Henley, J. M., and Nakanishi, S. (2000) PICK1 interacts with and regulates PKC phosphorylation of mGLUR7. J. Neurosci. 20, 7252-7257
-
(2000)
J. Neurosci.
, vol.20
, pp. 7252-7257
-
-
Dev, K.K.1
Nakajima, Y.2
Kitano, J.3
Braithwaite, S.P.4
Henley, J.M.5
Nakanishi, S.6
-
24
-
-
0033715818
-
EphB2 guides axons at the midline and is necessary for normal vestibular function
-
Cowan, C. A., Yokoyama, N., Bianchi, L. M., Henkemeyer, M., and Fritzsch, B. (2000) EphB2 guides axons at the midline and is necessary for normal vestibular function. Neuron 26, 417-430
-
(2000)
Neuron
, vol.26
, pp. 417-430
-
-
Cowan, C.A.1
Yokoyama, N.2
Bianchi, L.M.3
Henkemeyer, M.4
Fritzsch, B.5
-
25
-
-
0035026044
-
Functional interaction between monoamine plasma membrane transporters and the synaptic PDZ do-main- containing protein PICK1
-
Torres, G. E., Yao, W. D., Mohn, A. R., Quan, H., Kim, K. M., Levey, A. I., Staudinger, J., and Caron, M. G. (2001) Functional interaction between monoamine plasma membrane transporters and the synaptic PDZ do-main- containing protein PICK1. Neuron 30, 121-134
-
(2001)
Neuron
, vol.30
, pp. 121-134
-
-
Torres, G.E.1
Yao, W.D.2
Mohn, A.R.3
Quan, H.4
Kim, K.M.5
Levey, A.I.6
Staudinger, J.7
Caron, M.G.8
-
26
-
-
3843062537
-
Surface targeting of the dopamine transporter involves discrete epitopes in the distal C terminus but does not require canonical PDZ domain interactions
-
Bjerggaard, C., Fog, J. U., Hastrup, H., Madsen, K., Loland, C. J., Javitch, J. A., and Gether, U. (2004) Surface targeting of the dopamine transporter involves discrete epitopes in the distal C terminus but does not require canonical PDZ domain interactions. J. Neurosci. 24, 7024-7036
-
(2004)
J. Neurosci.
, vol.24
, pp. 7024-7036
-
-
Bjerggaard, C.1
Fog, J.U.2
Hastrup, H.3
Madsen, K.4
Loland, C.J.5
Javitch, J.A.6
Gether, U.7
-
27
-
-
0035805585
-
The ERBB2/HER2 receptor differentially interacts with ERBIN and PICK1 PSD-95/DLG/ZO-1 domain proteins
-
Jaulin-Bastard, F., Saito, H., Le Bivic, A., Ollendorff, V., Marchetto, S., Birnbaum, D., and Borg, J. P. (2001) The ERBB2/HER2 receptor differentially interacts with ERBIN and PICK1 PSD-95/DLG/ZO-1 domain proteins. J. Biol. Chem. 276, 15256-15263
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 15256-15263
-
-
Jaulin-Bastard, F.1
Saito, H.2
Le Bivic, A.3
Ollendorff, V.4
Marchetto, S.5
Birnbaum, D.6
Borg, J.P.7
-
28
-
-
37749030642
-
Interaction between the glutamate transporter GLT1b and the synaptic PDZ domain protein PICK1
-
Bassan, M., Liu, H., Madsen, K. L., Armsen, W., Zhou, J., Desilva, T., Chen, W., Paradise, A., Brasch, M. A., Staudinger, J., Gether, U., Irwin, N., and Rosenberg, P. A. (2008) Interaction between the glutamate transporter GLT1b and the synaptic PDZ domain protein PICK1. Eur. J. Neurosci. 27, 66-82
-
(2008)
Eur. J. Neurosci.
, vol.27
, pp. 66-82
-
-
Bassan, M.1
Liu, H.2
Madsen, K.L.3
Armsen, W.4
Zhou, J.5
Desilva, T.6
Chen, W.7
Paradise, A.8
Brasch, M.A.9
Staudinger, J.10
Gether, U.11
Irwin, N.12
Rosenberg, P.A.13
-
29
-
-
0346218115
-
Surface expression of the netrin receptor UNC5H1 is regulated through a protein kinase C-interacting protein/protein kinase-dependent mechanism
-
Williams, M. E., Wu, S. C., McKenna, W. L., and Hinck, L. (2003) Surface expression of the netrin receptor UNC5H1 is regulated through a protein kinase C-interacting protein/protein kinase-dependent mechanism. J. Neurosci. 23, 11279-11288
-
(2003)
J. Neurosci.
, vol.23
, pp. 11279-11288
-
-
Williams, M.E.1
Wu, S.C.2
McKenna, W.L.3
Hinck, L.4
-
30
-
-
0036472120
-
Interaction of the synaptic protein PICK1 (protein interacting with Ckinase 1) with the non-voltage gated sodium channels BNC1 (brain Na+channel 1) and ASIC (acid-sensing ion channel)
-
Hruska-Hageman, A. M., Wemmie, J. A., Price, M. P., and Welsh, M. J. (2002) Interaction of the synaptic protein PICK1 (protein interacting with Ckinase 1) with the non-voltage gated sodium channels BNC1 (brain Na+channel 1) and ASIC (acid-sensing ion channel). Biochem. J. 361, 443-450
-
(2002)
Biochem. J.
, vol.361
, pp. 443-450
-
-
Hruska-Hageman, A.M.1
Wemmie, J.A.2
Price, M.P.3
Welsh, M.J.4
-
31
-
-
0037184973
-
Protein kinase C stimulates the acid-sensing ion channel ASIC2a via the PDZ domain-containing protein PICK1
-
Baron, A., Deval, E., Salinas, M., Lingueglia, E., Voilley, N., and Lazdunski, M. (2002) Protein kinase C stimulates the acid-sensing ion channel ASIC2a via the PDZ domain-containing protein PICK1. J. Biol. Chem. 277, 50463-50468
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 50463-50468
-
-
Baron, A.1
Deval, E.2
Salinas, M.3
Lingueglia, E.4
Voilley, N.5
Lazdunski, M.6
-
32
-
-
20144374482
-
Molecular determinants for the complex binding specificity of the PDZ domain in PICK1
-
Madsen, K. L., Beuming, T., Niv, M. Y., Chang, C. W., Dev, K. K., Weinstein, H., and Gether, U. (2005) Molecular determinants for the complex binding specificity of the PDZ domain in PICK1. J. Biol. Chem. 280, 20539-20548
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 20539-20548
-
-
Madsen, K.L.1
Beuming, T.2
Niv, M.Y.3
Chang, C.W.4
Dev, K.K.5
Weinstein, H.6
Gether, U.7
-
33
-
-
33947712970
-
Structure of PICK1 and other PDZ domains obtained with the help of self-binding C-terminal extensions
-
Elkins, J. M., Papagrigoriou, E., Berridge, G., Yang, X., Phillips, C., Gileadi, C., Savitsky, P., and Doyle, D. A. (2007) Structure of PICK1 and other PDZ domains obtained with the help of self-binding C-terminal extensions. Protein Sci. 16, 683-694
-
(2007)
Protein Sci.
, vol.16
, pp. 683-694
-
-
Elkins, J.M.1
Papagrigoriou, E.2
Berridge, G.3
Yang, X.4
Phillips, C.5
Gileadi, C.6
Savitsky, P.7
Doyle, D.A.8
-
34
-
-
35648957794
-
Clustering and synaptic targeting of PICK1 requires direct interaction between the PDZ domain and lipid membranes
-
Pan, L., Wu, H., Shen, C., Shi, Y., Jin, W., Xia, J., and Zhang, M. (2007) Clustering and synaptic targeting of PICK1 requires direct interaction between the PDZ domain and lipid membranes. EMBO J. 26, 4576-4587
-
(2007)
EMBO J.
, vol.26
, pp. 4576-4587
-
-
Pan, L.1
Wu, H.2
Shen, C.3
Shi, Y.4
Jin, W.5
Xia, J.6
Zhang, M.7
-
35
-
-
41149124394
-
Hyperdimensional NMR spectroscopy with nonlinear sampling
-
Jaravine, V. A., Zhuravleva, A. V., Permi, P., Ibraghimov, I., and Orekhov, V. Y. (2008) Hyperdimensional NMR spectroscopy with nonlinear sampling. J. Am. Chem. Soc. 130, 3927-3936
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 3927-3936
-
-
Jaravine, V.A.1
Zhuravleva, A.V.2
Permi, P.3
Ibraghimov, I.4
Orekhov, V.Y.5
-
36
-
-
79958040716
-
Accelerated NMR spectroscopy by using compressed sensing
-
Kazimierczuk, K., and Orekhov, V. Y. (2011) Accelerated NMR spectroscopy by using compressed sensing. Angew. Chem. Int. Ed. Engl. 50, 5556-5559
-
(2011)
Angew. Chem. Int. Ed. Engl.
, vol.50
, pp. 5556-5559
-
-
Kazimierczuk, K.1
Orekhov, V.Y.2
-
37
-
-
80052810923
-
Analysis of non-uniformly sampled spectra with multi-dimensional decomposition
-
Orekhov, V. Y., and Jaravine, V. A. (2011) Analysis of non-uniformly sampled spectra with multi-dimensional decomposition. Prog. Nucl. Magn. Reson Spectrosc. 59, 271-292
-
(2011)
Prog. Nucl. Magn. Reson Spectrosc.
, vol.59
, pp. 271-292
-
-
Orekhov, V.Y.1
Jaravine, V.A.2
-
38
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6, 277-293
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
39
-
-
19444382397
-
The CCPN data model for NMR spectroscopy: Development of a software pipeline
-
Vranken, W. F., Boucher, W., Stevens, T. J., Fogh, R. H., Pajon, A., Llinas, M., Ulrich, E. L., Markley, J. L., Ionides, J., and Laue, E. D. (2005) The CCPN data model for NMR spectroscopy: development of a software pipeline. Proteins 59, 687-696
-
(2005)
Proteins
, vol.59
, pp. 687-696
-
-
Vranken, W.F.1
Boucher, W.2
Stevens, T.J.3
Fogh, R.H.4
Pajon, A.5
Llinas, M.6
Ulrich, E.L.7
Markley, J.L.8
Ionides, J.9
Laue, E.D.10
-
40
-
-
72449187567
-
DANGLE: A Bayesian inferential method for predicting protein backbone dihedral angles and secondary structure
-
Cheung, M. S., Maguire, M. L., Stevens, T. J., and Broadhurst, R. W. (2010) DANGLE: a Bayesian inferential method for predicting protein backbone dihedral angles and secondary structure. J. Magn. Reson. 202, 223-233
-
(2010)
J. Magn. Reson.
, vol.202
, pp. 223-233
-
-
Cheung, M.S.1
Maguire, M.L.2
Stevens, T.J.3
Broadhurst, R.W.4
-
41
-
-
0037442962
-
HADDOCK: A pro-tein- protein docking approach based on biochemical or biophysical information
-
Dominguez, C., Boelens, R., and Bonvin, A. M. (2003) HADDOCK: a pro-tein- protein docking approach based on biochemical or biophysical information. J. Am. Chem. Soc. 125, 1731-1737
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.3
-
42
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 54, 905-921
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
43
-
-
0037316363
-
ARIA: Automated NOE assignment and NMR structure calculation
-
Linge, J. P., Habeck, M., Rieping, W., and Nilges, M. (2003) ARIA: automated NOE assignment and NMR structure calculation. Bioinformatics 19, 315-316
-
(2003)
Bioinformatics
, vol.19
, pp. 315-316
-
-
Linge, J.P.1
Habeck, M.2
Rieping, W.3
Nilges, M.4
-
44
-
-
34250160169
-
Structure and function of PICK1
-
Xu, J., and Xia, J. (2006) Structure and function of PICK1. Neurosignals 15, 190-201
-
(2006)
Neurosignals
, vol.15
, pp. 190-201
-
-
Xu, J.1
Xia, J.2
-
45
-
-
84859444323
-
The binding affinities of proteins interacting with the PDZ domain of PICK1
-
Bolia, A., Gerek, Z. N., Keskin, O., Banu Ozkan, S., and Dev, K. K. (2012) The binding affinities of proteins interacting with the PDZ domain of PICK1. Proteins 80, 1393-1408
-
(2012)
Proteins
, vol.80
, pp. 1393-1408
-
-
Bolia, A.1
Gerek, Z.N.2
Keskin, O.3
Banu Ozkan, S.4
Dev, K.K.5
-
46
-
-
84856450634
-
The PSD-95/nNOS complex: New drugs for depression?
-
Doucet, M. V., Harkin, A., and Dev, K. K. (2012) The PSD-95/nNOS complex: new drugs for depression? Pharmacol. Ther. 133, 218-229
-
(2012)
Pharmacol. Ther.
, vol.133
, pp. 218-229
-
-
Doucet, M.V.1
Harkin, A.2
Dev, K.K.3
-
47
-
-
33750215004
-
The schizophrenic faces of PICK1
-
Dev, K. K., and Henley, J. M. (2006) The schizophrenic faces of PICK1. Trends Pharmacol. Sci. 27, 574-579
-
(2006)
Trends Pharmacol. Sci.
, vol.27
, pp. 574-579
-
-
Dev, K.K.1
Henley, J.M.2
-
48
-
-
10444276589
-
Making protein interactions druggable: Targeting PDZ domains
-
Dev, K. K. (2004) Making protein interactions druggable: targeting PDZ domains. Nat. Rev. Drug Discov. 3, 1047-1056
-
(2004)
Nat. Rev. Drug Discov.
, vol.3
, pp. 1047-1056
-
-
Dev, K.K.1
-
49
-
-
7544232779
-
Internal recognition through PDZ domain plasticity in the Par-6-Pals1 complex
-
Penkert, R. R., DiVittorio, H. M., and Prehoda, K. E. (2004) Internal recognition through PDZ domain plasticity in the Par-6-Pals1 complex. Nat. Struct. Mol. Biol. 11, 1122-1127
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 1122-1127
-
-
Penkert, R.R.1
DiVittorio, H.M.2
Prehoda, K.E.3
-
50
-
-
0033617473
-
Unexpected modes of PDZ domain scaffolding revealed by structure of nNOS-syntrophin complex
-
Hillier, B. J., Christopherson, K. S., Prehoda, K. E., Bredt, D. S., and Lim, W. A. (1999) Unexpected modes of PDZ domain scaffolding revealed by structure of nNOS-syntrophin complex. Science 284, 812-815
-
(1999)
Science
, vol.284
, pp. 812-815
-
-
Hillier, B.J.1
Christopherson, K.S.2
Prehoda, K.E.3
Bredt, D.S.4
Lim, W.A.5
-
51
-
-
0344413477
-
Direct binding of the PDZ domain of Dishevelled to a conserved internal sequence in the C-terminal region of Frizzled
-
Wong, H. C., Bourdelas, A., Krauss, A., Lee, H. J., Shao, Y., Wu, D., Mlodzik, M., Shi, D. L., and Zheng, J. (2003) Direct binding of the PDZ domain of Dishevelled to a conserved internal sequence in the C-terminal region of Frizzled. Mol. Cell 12, 1251-1260
-
(2003)
Mol. Cell
, vol.12
, pp. 1251-1260
-
-
Wong, H.C.1
Bourdelas, A.2
Krauss, A.3
Lee, H.J.4
Shao, Y.5
Wu, D.6
Mlodzik, M.7
Shi, D.L.8
Zheng, J.9
-
52
-
-
79957623643
-
Characterizing the N- and C-terminal small ubiq-uitin- like modifier (SUMO)-interacting motifs of the scaffold protein DAXX
-
Escobar-Cabrera, E., Okon, M., Lau, D. K., Dart, C. F., Bonvin, A. M., and McIntosh, L. P. (2011) Characterizing the N- and C-terminal small ubiq-uitin- like modifier (SUMO)-interacting motifs of the scaffold protein DAXX. J. Biol. Chem. 286, 19816-19829
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 19816-19829
-
-
Escobar-Cabrera, E.1
Okon, M.2
Lau, D.K.3
Dart, C.F.4
Bonvin, A.M.5
McIntosh, L.P.6
-
53
-
-
47349099470
-
Mapping of two networks of residues that exhibit structural and dynamical changes upon binding in a PDZ domain protein
-
Dhulesia, A., Gsponer, J., and Vendruscolo, M. (2008) Mapping of two networks of residues that exhibit structural and dynamical changes upon binding in a PDZ domain protein. J. Am. Chem. Soc. 130, 8931-8939
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 8931-8939
-
-
Dhulesia, A.1
Gsponer, J.2
Vendruscolo, M.3
-
54
-
-
84879842193
-
Energetic pathway sampling in a protein interaction domain
-
Hultqvist, G., Haq, S. R., Punekar, A. S., Chi, C. N., Engström, A˚., Bach, A., Strømgaard, K., Selmer, M., Gianni, S., and Jemth, P. (2013) Energetic pathway sampling in a protein interaction domain. Structure 21, 1193-1202
-
(2013)
Structure
, vol.21
, pp. 1193-1202
-
-
Hultqvist, G.1
Haq, S.R.2
Punekar, A.S.3
Chi, C.N.4
Engström A˚.5
Bach, A.6
Strømgaard, K.7
Selmer, M.8
Gianni, S.9
Jemth, P.10
-
55
-
-
33746819780
-
Convergent and divergent ligand specificity among PDZ domains of the LAP and zonula occludens (ZO) families
-
Zhang, Y., Yeh, S., Appleton, B. A., Held, H. A., Kausalya, P. J., Phua, D. C., Wong, W. L., Lasky, L. A., Wiesmann, C., Hunziker, W., and Sidhu, S. S. (2006) Convergent and divergent ligand specificity among PDZ domains of the LAP and zonula occludens (ZO) families. J. Biol. Chem. 281, 22299-22311
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 22299-22311
-
-
Zhang, Y.1
Yeh, S.2
Appleton, B.A.3
Held, H.A.4
Kausalya, P.J.5
Phua, D.C.6
Wong, W.L.7
Lasky, L.A.8
Wiesmann, C.9
Hunziker, W.10
Sidhu, S.S.11
-
56
-
-
84865189134
-
Interference with the PTEN-MAST2 interaction by a viral protein leads to cellular relocalization of PTEN
-
Terrien, E., Chaffotte, A., Lafage, M., Khan, Z., Préhaud, C., Cordier, F., Simenel, C., Delepierre, M., Buc, H., Lafon, M., and Wolff, N. (2012) Interference with the PTEN-MAST2 interaction by a viral protein leads to cellular relocalization of PTEN. Sci. Signal. 5, ra58
-
(2012)
Sci. Signal.
, vol.5
, pp. ra58
-
-
Terrien, E.1
Chaffotte, A.2
Lafage, M.3
Khan, Z.4
Préhaud, C.5
Cordier, F.6
Simenel, C.7
Delepierre, M.8
Buc, H.9
Lafon, M.10
Wolff, N.11
-
57
-
-
84861117819
-
Beyond the binding site: The role of the β(2)-β(3) loop and extra-domain structures in PDZ domains
-
Mostarda, S., Gfeller, D., and Rao, F. (2012) Beyond the binding site: the role of the β(2)-β(3) loop and extra-domain structures in PDZ domains. PLoS Comput. Biol. 8, e1002429
-
(2012)
PLoS Comput. Biol.
, vol.8
, pp. e1002429
-
-
Mostarda, S.1
Gfeller, D.2
Rao, F.3
-
58
-
-
75749093457
-
Distal interactions within the par3-VE-cadherin complex
-
Tyler, R. C., Peterson, F. C., and Volkman, B. F. (2010) Distal interactions within the par3-VE-cadherin complex. Biochemistry 49, 951-957
-
(2010)
Biochemistry
, vol.49
, pp. 951-957
-
-
Tyler, R.C.1
Peterson, F.C.2
Volkman, B.F.3
-
59
-
-
84879556288
-
Ligand-induced dynamic changes in extended PDZ domains from NHERF1
-
Bhattacharya, S., Ju, J. H., Orlova, N., Khajeh, J. A., Cowburn, D., and Bu, Z. (2013) Ligand-induced dynamic changes in extended PDZ domains from NHERF1. J. Mol. Biol. 425, 2509-2528
-
(2013)
J. Mol. Biol.
, vol.425
, pp. 2509-2528
-
-
Bhattacharya, S.1
Ju, J.H.2
Orlova, N.3
Khajeh, J.A.4
Cowburn, D.5
Bu, Z.6
-
60
-
-
84868600086
-
Interactions outside the boundaries of the canonical binding groove of a PDZ domain influence ligand binding
-
Chi, C. N., Haq, S. R., Rinaldo, S., Dogan, J., Cutruzzolá, F., Engström, A˚., Gianni, S., Lundström, P., and Jemth, P. (2012) Interactions outside the boundaries of the canonical binding groove of a PDZ domain influence ligand binding. Biochemistry 51, 8971-8979
-
(2012)
Biochemistry
, vol.51
, pp. 8971-8979
-
-
Chi, C.N.1
Haq, S.R.2
Rinaldo, S.3
Dogan, J.4
Cutruzzolá, F.5
Engström A˚.6
Gianni, S.7
Lundström, P.8
Jemth, P.9
-
61
-
-
79953153131
-
Extensions of PDZ domains as important structural and functional elements
-
Wang, C. K., Pan, L., Chen, J., and Zhang, M. (2010) Extensions of PDZ domains as important structural and functional elements. Protein Cell 1, 737-751
-
(2010)
Protein Cell
, vol.1
, pp. 737-751
-
-
Wang, C.K.1
Pan, L.2
Chen, J.3
Zhang, M.4
|