-
1
-
-
0022799080
-
Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements
-
Almer A, Rudolph H, Hinnen A, Horz W: Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements. EMBO J 5: 2689-2696 (1986).
-
(1986)
EMBO J
, vol.5
, pp. 2689-2696
-
-
Almer, A.1
Rudolph, H.2
Hinnen, A.3
Horz, W.4
-
2
-
-
70349267600
-
Mapping accessible chromatin regions using Sono-Seq
-
Auerbach RK, Euskirchen G, Rozowsky J, Lamarre-Vincent N, Moqtaderi Z, et al: Mapping accessible chromatin regions using Sono-Seq. Proc Natl Acad Sci USA 106: 14926-14931 (2009).
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 14926-14931
-
-
Auerbach, R.K.1
Euskirchen, G.2
Rozowsky, J.3
Lamarre-Vincent, N.4
Moqtaderi, Z.5
-
3
-
-
77954386433
-
Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetylation and replication timing
-
Bell O, Schwaiger M, Oakeley EJ, Lienert F, Beisel C, et al: Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetylation and replication timing. Nat Struct Mol Biol 17: 894-900 (2010).
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 894-900
-
-
Bell, O.1
Schwaiger, M.2
Oakeley, E.J.3
Lienert, F.4
Beisel, C.5
-
5
-
-
0033861846
-
Betaglobin gene switching and DNase i sensitivity of the endogenous beta-globin locus in mice do not require the locus control region
-
Bender MA, Bulger M, Close J, Groudine M: Betaglobin gene switching and DNase I sensitivity of the endogenous beta-globin locus in mice do not require the locus control region. Mol Cell 5: 387-393 (2000).
-
(2000)
Mol Cell
, vol.5
, pp. 387-393
-
-
Bender, M.A.1
Bulger, M.2
Close, J.3
Groudine, M.4
-
6
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
Bernstein BE, Birney E, Dunham I, Green ED, Gunter C, et al: An integrated encyclopedia of DNA elements in the human genome. Nature 489: 57-74 (2012).
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Bernstein, B.E.1
Birney, E.2
Dunham, I.3
Green, E.D.4
Gunter, C.5
-
7
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
Birney E, Stamatoyannopoulos JA, Dutta A, Guigo R, Gingeras TR, et al: Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447: 799-816 (2007).
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
Guigo, R.4
Gingeras, T.R.5
-
8
-
-
84859856764
-
A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function
-
Bischof JM, Ott CJ, Leir SH, Gosalia N, Song L, et al: A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function. Thorax 67: 385-391 (2012).
-
(2012)
Thorax
, vol.67
, pp. 385-391
-
-
Bischof, J.M.1
Ott, C.J.2
Leir, S.H.3
Gosalia, N.4
Song, L.5
-
9
-
-
0020324991
-
Yeast centromere DNA is in a unique and highly ordered structure in chromosomes and small circular minichromosomes
-
Bloom KS, Carbon J: Yeast centromere DNA is in a unique and highly ordered structure in chromosomes and small circular minichromosomes. Cell 29: 305-317 (1982).
-
(1982)
Cell
, vol.29
, pp. 305-317
-
-
Bloom, K.S.1
Carbon, J.2
-
10
-
-
0019586131
-
Nuclease-sensitive regions on the extrachromosomal r-chromatin from Tetrahymena pyriformis
-
Borchsenius S, Bonven B, Leer JC, Westergaard O: Nuclease-sensitive regions on the extrachromosomal r-chromatin from Tetrahymena pyriformis. Eur J Biochem 117: 245-250 (1981).
-
(1981)
Eur J Biochem
, vol.117
, pp. 245-250
-
-
Borchsenius, S.1
Bonven, B.2
Leer, J.C.3
Westergaard, O.4
-
11
-
-
38649099445
-
High-resolution mapping and characterization of open chromatin across the genome
-
Boyle AP, Davis S, Shulha HP, Meltzer P, Margulies EH, et al: High-resolution mapping and characterization of open chromatin across the genome. Cell 132: 311-322 (2008).
-
(2008)
Cell
, vol.132
, pp. 311-322
-
-
Boyle, A.P.1
Davis, S.2
Shulha, H.P.3
Meltzer, P.4
Margulies, E.H.5
-
12
-
-
79952267284
-
High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
-
Boyle AP, Song L, Lee BK, London D, Keefe D, et al: High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells. Genome Res 21: 456-464 (2011).
-
(2011)
Genome Res
, vol.21
, pp. 456-464
-
-
Boyle, A.P.1
Song, L.2
Lee, B.K.3
London, D.4
Keefe, D.5
-
13
-
-
0022625176
-
Chromatin structure of the telomeric region and 3 nontranscribed spacer of Tetrahymena ribosomal RNA genes
-
Budarf ML, Blackburn EH: Chromatin structure of the telomeric region and 3 nontranscribed spacer of Tetrahymena ribosomal RNA genes. J Biol Chem 261: 363-369 (1986).
-
(1986)
J Biol Chem
, vol.261
, pp. 363-369
-
-
Budarf, M.L.1
Blackburn, E.H.2
-
14
-
-
84888877924
-
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
-
Buenrostro JD, Giresi PG, Zaba LC, Chang HY, Greenleaf WJ: Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nat Methods 10: 1213-1218 (2013).
-
(2013)
Nat Methods
, vol.10
, pp. 1213-1218
-
-
Buenrostro, J.D.1
Giresi, P.G.2
Zaba, L.C.3
Chang, H.Y.4
Greenleaf, W.J.5
-
15
-
-
0042091987
-
A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse beta-globin locus
-
Bulger M, Schubeler D, Bender MA, Hamilton J, Farrell CM, et al: A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse beta-globin locus. Mol Cell Biol 23: 5234-5244 (2003).
-
(2003)
Mol Cell Biol
, vol.23
, pp. 5234-5244
-
-
Bulger, M.1
Schubeler, D.2
Bender, M.A.3
Hamilton, J.4
Farrell, C.M.5
-
16
-
-
0020480611
-
Analysis of chromatin structure and DNA sequence organization: Use of the 1,10-phenanthroline-cuprous complex
-
Cartwright IL, Elgin SC: Analysis of chromatin structure and DNA sequence organization: use of the 1,10-phenanthroline-cuprous complex. Nucleic Acids Res 10: 5835-5852 (1982).
-
(1982)
Nucleic Acids Res
, vol.10
, pp. 5835-5852
-
-
Cartwright, I.L.1
Elgin, S.C.2
-
18
-
-
62349111195
-
Epigenetic regulation of stress responses in plants
-
Chinnusamy V, Zhu JK: Epigenetic regulation of stress responses in plants. Curr Opin Plant Biol 12: 133-139 (2009).
-
(2009)
Curr Opin Plant Biol
, vol.12
, pp. 133-139
-
-
Chinnusamy, V.1
Zhu, J.K.2
-
19
-
-
79959290797
-
Structure and function of active chromatin and DNase i hypersensitive sites
-
Cockerill PN: Structure and function of active chromatin and DNase I hypersensitive sites. FEBS J 278: 2182-2210 (2011).
-
(2011)
FEBS J
, vol.278
, pp. 2182-2210
-
-
Cockerill, P.N.1
-
20
-
-
0027393844
-
DNase i and micrococcal nuclease analysis of the tomato proteinase inhibitor i gene in chromatin
-
Conconi A, Ryan CA: DNase I and micrococcal nuclease analysis of the tomato proteinase inhibitor I gene in chromatin. J Biol Chem 268: 430-435 (1993).
-
(1993)
J Biol Chem
, vol.268
, pp. 430-435
-
-
Conconi, A.1
Ryan, C.A.2
-
21
-
-
10744232248
-
Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites
-
Crawford GE, Holt IE, Mullikin JC, Tai D, Blakesley R, et al: Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites. Proc Natl Acad Sci USA 101: 992-997 (2004).
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 992-997
-
-
Crawford, G.E.1
Holt, I.E.2
Mullikin, J.C.3
Tai, D.4
Blakesley, R.5
-
22
-
-
33745409293
-
DNase-chip: A high-resolution method to identify DNase i hypersensitive sites using tiled microarrays
-
Crawford GE, Davis S, Scacheri PC, Renaud G, Halawi MJ, et al: DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays. Nat Methods 3: 503-509 (2006a).
-
(2006)
Nat Methods
, vol.3
, pp. 503-509
-
-
Crawford, G.E.1
Davis, S.2
Scacheri, P.C.3
Renaud, G.4
Halawi, M.J.5
-
23
-
-
30044449116
-
Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)
-
Crawford GE, Holt IE, Whittle J, Webb BD, Tai D, et al: Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS). Genome Res 16: 123-131 (2006b).
-
(2006)
Genome Res
, vol.16
, pp. 123-131
-
-
Crawford, G.E.1
Holt, I.E.2
Whittle, J.3
Webb, B.D.4
Tai, D.5
-
25
-
-
62549154470
-
DNase i hypersensitive sites within the intergenic spacer of ribosomal RNA genes in reconstructed barley karyotypes
-
Dimitrova AD, Ananiev ED, Gecheff KI: DNase I hypersensitive sites within the intergenic spacer of ribosomal RNA genes in reconstructed barley karyotypes. Biotechnol Biotechnol Equip 23: 1039-1043 (2009).
-
(2009)
Biotechnol Biotechnol Equip
, vol.23
, pp. 1039-1043
-
-
Dimitrova, A.D.1
Ananiev, E.D.2
Gecheff, K.I.3
-
26
-
-
20844435623
-
High-throughput localization of functional elements by quantitative chromatin profiling
-
Dorschner MO, Hawrylycz M, Humbert R, Wallace JC, Shafer A, et al: High-throughput localization of functional elements by quantitative chromatin profiling. Nat Methods 1: 219-225 (2004).
-
(2004)
Nat Methods
, vol.1
, pp. 219-225
-
-
Dorschner, M.O.1
Hawrylycz, M.2
Humbert, R.3
Wallace, J.C.4
Shafer, A.5
-
27
-
-
34248524473
-
Mapping networks of physical interactions between genomic elements using 5C technology
-
Dostie J, Dekker J: Mapping networks of physical interactions between genomic elements using 5C technology. Nat Protoc 2: 988-1002 (2007).
-
(2007)
Nat Protoc
, vol.2
, pp. 988-1002
-
-
Dostie, J.1
Dekker, J.2
-
29
-
-
0019842812
-
DNase I-hypersensitive sites of chromatin
-
Elgin SC: DNase I-hypersensitive sites of chromatin. Cell 27: 413-415 (1981).
-
(1981)
Cell
, vol.27
, pp. 413-415
-
-
Elgin, S.C.1
-
30
-
-
0021367117
-
Location of DNase i sensitive cleavage sites in the yeast 2 micron plasmid DNA chromosome
-
Fagrelius TJ, Livingston DM: Location of DNase I sensitive cleavage sites in the yeast 2 micron plasmid DNA chromosome. J Mol Biol 173: 1-13 (1984).
-
(1984)
J Mol Biol
, vol.173
, pp. 1-13
-
-
Fagrelius, T.J.1
Livingston, D.M.2
-
31
-
-
0026560488
-
High-resolution analysis of c-fos chromatin accessibility using a novel DNase I-PCR assay
-
Feng J, Villeponteau B: High-resolution analysis of c-fos chromatin accessibility using a novel DNase I-PCR assay. Biochim Biophys Acta 1130: 253-258 (1992).
-
(1992)
Biochim Biophys Acta
, vol.1130
, pp. 253-258
-
-
Feng, J.1
Villeponteau, B.2
-
32
-
-
0023655292
-
In vivo detection of regulatory factor binding sites in the 5 flanking region of maize Adh1
-
Ferl RJ, Nick HS: In vivo detection of regulatory factor binding sites in the 5 flanking region of maize Adh1. J Biol Chem 262: 7947-7950 (1987).
-
(1987)
J Biol Chem
, vol.262
, pp. 7947-7950
-
-
Ferl, R.J.1
Nick, H.S.2
-
33
-
-
34250348746
-
Real-time PCR mapping of DNaseIhypersensitive sites using a novel ligationmediated amplification technique
-
Follows GA, Janes ME, Vallier L, Green AR, Gottgens B: Real-time PCR mapping of DNaseIhypersensitive sites using a novel ligationmediated amplification technique. Nucleic Acids Res 35:e56 (2007).
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Follows, G.A.1
Janes, M.E.2
Vallier, L.3
Green, A.R.4
Gottgens, B.5
-
34
-
-
0021100986
-
Nucleasehypersensitive sites in the chromatin domain of the chicken lysozyme gene
-
Fritton HP, Sippel AE, Igo-Kemenes T: Nucleasehypersensitive sites in the chromatin domain of the chicken lysozyme gene. Nucleic Acids Res 11: 3467-3485 (1983).
-
(1983)
Nucleic Acids Res
, vol.11
, pp. 3467-3485
-
-
Fritton, H.P.1
Sippel, A.E.2
Igo-Kemenes, T.3
-
35
-
-
70449103609
-
An oestrogen-receptor-alpha-bound human chromatin interactome
-
Fullwood MJ, Liu MH, Pan YF, Liu J, Xu H, et al: An oestrogen-receptor- alpha-bound human chromatin interactome. Nature 462: 58-64 (2009).
-
(2009)
Nature
, vol.462
, pp. 58-64
-
-
Fullwood, M.J.1
Liu, M.H.2
Pan, Y.F.3
Liu, J.4
Xu, H.5
-
36
-
-
0018199224
-
DNase footprinting: A simple method for the detection of protein-DNA binding specificity
-
Galas DJ, Schmitz A: DNase footprinting: a simple method for the detection of protein-DNA binding specificity. Nucleic Acids Res 5: 3157-3170 (1978).
-
(1978)
Nucleic Acids Res
, vol.5
, pp. 3157-3170
-
-
Galas, D.J.1
Schmitz, A.2
-
37
-
-
0022419157
-
Chromatin-specific hypersensitive sites are assembled on a Xenopus histone gene injected into Xenopus oocytes
-
Gargiulo G, Razvi F, Ruberti I, Mohr I, Worcel A: Chromatin-specific hypersensitive sites are assembled on a Xenopus histone gene injected into Xenopus oocytes. J Mol Biol 181: 333-349 (1985).
-
(1985)
J Mol Biol
, vol.181
, pp. 333-349
-
-
Gargiulo, G.1
Razvi, F.2
Ruberti, I.3
Mohr, I.4
Worcel, A.5
-
38
-
-
78650410139
-
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
-
Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, et al: Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science 330: 1775-1787 (2010).
-
(2010)
Science
, vol.330
, pp. 1775-1787
-
-
Gerstein, M.B.1
Lu, Z.J.2
Van Nostrand, E.L.3
Cheng, C.4
Arshinoff, B.I.5
-
39
-
-
34250369627
-
FAIRE (formaldehyde-assisted isolation of regulatory elements) isolates active regulatory elements from human chromatin
-
Giresi PG, Kim J, McDaniell RM, Iyer VR, Lieb JD: FAIRE (formaldehyde-assisted isolation of regulatory elements) isolates active regulatory elements from human chromatin. Genome Res 17: 877-885 (2007).
-
(2007)
Genome Res
, vol.17
, pp. 877-885
-
-
Giresi, P.G.1
Kim, J.2
McDaniell, R.M.3
Iyer, V.R.4
Lieb, J.D.5
-
40
-
-
0000537310
-
Constitutive and light-induced DNaseI hypersensitive sites in the rbcS genes of pea (Pisum sativum)
-
Gorz A, Schafer W, Hirasawa E, Kahl G: Constitutive and light-induced DNaseI hypersensitive sites in the rbcS genes of pea (Pisum sativum). Plant Mol Biol 11: 561-573 (1988).
-
(1988)
Plant Mol Biol
, vol.11
, pp. 561-573
-
-
Gorz, A.1
Schafer, W.2
Hirasawa, E.3
Kahl, G.4
-
41
-
-
0023899769
-
Nuclease hypersensitive sites in chromatin
-
Gross DS, Garrard WT: Nuclease hypersensitive sites in chromatin. Annu Rev Biochem 57: 159-197 (1988).
-
(1988)
Annu Rev Biochem
, vol.57
, pp. 159-197
-
-
Gross, D.S.1
Garrard, W.T.2
-
42
-
-
0023663887
-
Position-independent, high-level expression of the human beta-globin gene in transgenic mice
-
Grosveld F, van Assendelft GB, Greaves DR, Kollias G: Position-independent, high-level expression of the human beta-globin gene in transgenic mice. Cell 51: 975-985 (1987).
-
(1987)
Cell
, vol.51
, pp. 975-985
-
-
Grosveld, F.1
Van Assendelft, G.B.2
Greaves, D.R.3
Kollias, G.4
-
43
-
-
0005150254
-
Human fetal to adult hemoglobin switching: Changes in chromatin structure of the beta-globin gene locus
-
Groudine M, Kohwi-Shigematsu T, Gelinas R, Stamatoyannopoulos G, Papayannopoulou T: Human fetal to adult hemoglobin switching: changes in chromatin structure of the beta-globin gene locus. Proc Natl Acad Sci USA 80: 7551-7555 (1983).
-
(1983)
Proc Natl Acad Sci USA
, vol.80
, pp. 7551-7555
-
-
Groudine, M.1
Kohwi-Shigematsu, T.2
Gelinas, R.3
Stamatoyannopoulos, G.4
Papayannopoulou, T.5
-
44
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, et al: Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet 39: 311-318 (2007).
-
(2007)
Nat Genet
, vol.39
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
-
45
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-typespecific gene expression
-
Heintzman ND, Hon GC, Hawkins RD, Kheradpour P, Stark A, et al: Histone modifications at human enhancers reflect global cell-typespecific gene expression. Nature 459: 108-112 (2009).
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
Hon, G.C.2
Hawkins, R.D.3
Kheradpour, P.4
Stark, A.5
-
46
-
-
63849308888
-
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting
-
Hesselberth JR, Chen X, Zhang Z, Sabo PJ, Sandstrom R, et al: Global mapping of protein-DNA interactions in vivo by digital genomic footprinting. Nat Methods 6: 283-289 (2009).
-
(2009)
Nat Methods
, vol.6
, pp. 283-289
-
-
Hesselberth, J.R.1
Chen, X.2
Zhang, Z.3
Sabo, P.J.4
Sandstrom, R.5
-
47
-
-
33749406106
-
Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters
-
Hogan GJ, Lee CK, Lieb JD: Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters. PLoS Genet 2:e158 (2006).
-
(2006)
PLoS Genet
, vol.2
-
-
Hogan, G.J.1
Lee, C.K.2
Lieb, J.D.3
-
48
-
-
84880845871
-
Genome-scale mapping of DNase i hypersensitivity
-
John S, Sabo PJ, Canfield TK, Lee K, Vong S, et al: Genome-scale mapping of DNase I hypersensitivity. Curr Protoc Mol Biol Chapter 27: Unit21 27 (2013).
-
(2013)
Curr Protoc Mol Biol Chapter
, vol.27
, pp. 21-27
-
-
John, S.1
Sabo, P.J.2
Canfield, T.K.3
Lee, K.4
Vong, S.5
-
49
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
Johnson DS, Mortazavi A, Myers RM, Wold B: Genome-wide mapping of in vivo protein-DNA interactions. Science 316: 1497-1502 (2007).
-
(2007)
Science
, vol.316
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
50
-
-
65949090511
-
Target genes of the MADS transcription factor SEPALLATA3: Integration of developmental and hormonal pathways in the Arabidopsis flower
-
Kaufmann K, Muino JM, Jauregui R, Airoldi CA, Smaczniak C, et al: Target genes of the MADS transcription factor SEPALLATA3: integration of developmental and hormonal pathways in the Arabidopsis flower. PLoS Biol 7: 854-875 (2009).
-
(2009)
PLoS Biol
, vol.7
, pp. 854-875
-
-
Kaufmann, K.1
Muino, J.M.2
Jauregui, R.3
Airoldi, C.A.4
Smaczniak, C.5
-
51
-
-
77950500412
-
Orchestration of floral initiation by APETALA1
-
Kaufmann K, Wellmer F, Muino JM, Ferrier T, Wuest SE, et al: Orchestration of floral initiation by APETALA1. Science 328: 85-89 (2010).
-
(2010)
Science
, vol.328
, pp. 85-89
-
-
Kaufmann, K.1
Wellmer, F.2
Muino, J.M.3
Ferrier, T.4
Wuest, S.E.5
-
52
-
-
0021430669
-
A close association between sites of DNase i hypersensitivity and sites of enhanced cleavage by micrococcal nuclease in the 5 flanking region of the actively transcribed ovalbumin gene
-
Kaye JS, Bellard M, Dretzen G, Bellard F, Chambon P: A close association between sites of DNase I hypersensitivity and sites of enhanced cleavage by micrococcal nuclease in the 5 flanking region of the actively transcribed ovalbumin gene. EMBO J 3: 1137-1144 (1984).
-
(1984)
EMBO J
, vol.3
, pp. 1137-1144
-
-
Kaye, J.S.1
Bellard, M.2
Dretzen, G.3
Bellard, F.4
Chambon, P.5
-
53
-
-
0019401409
-
DNase i hypersensitive sites in Drosophila chromatin occur at the 5 ends of regions of transcription
-
Keene MA, Corces V, Lowenhaupt K, Elgin SC: DNase I hypersensitive sites in Drosophila chromatin occur at the 5 ends of regions of transcription. Proc Natl Acad Sci USA 78: 143-146 (1981).
-
(1981)
Proc Natl Acad Sci USA
, vol.78
, pp. 143-146
-
-
Keene, M.A.1
Corces, V.2
Lowenhaupt, K.3
Elgin, S.C.4
-
54
-
-
77950990836
-
Chromatin regulation functions in plant abiotic stress responses
-
Kim JM, To TK, Nishioka T, Seki M: Chromatin regulation functions in plant abiotic stress responses. Plant Cell Environ 33: 604-611 (2010).
-
(2010)
Plant Cell Environ
, vol.33
, pp. 604-611
-
-
Kim, J.M.1
To, T.K.2
Nishioka, T.3
Seki, M.4
-
55
-
-
0001335588
-
DNA methylation is reduced in DNasel-sensitive regions of plant chromatin
-
Klaas M, Amasino RM: DNA methylation is reduced in DNasel-sensitive regions of plant chromatin. Plant Physiol 91: 451-454 (1989).
-
(1989)
Plant Physiol
, vol.91
, pp. 451-454
-
-
Klaas, M.1
Amasino, R.M.2
-
56
-
-
34548856233
-
Distinct DNase i hypersensitive sites are absent from promoters of transcriptionally incompetent genes in Arabidopsis
-
Kodama Y, Nagaya S, Shinmyo A, Kato K: Distinct DNase I hypersensitive sites are absent from promoters of transcriptionally incompetent genes in Arabidopsis. Plant Biotechnology 24: 383-392 (2007a).
-
(2007)
Plant Biotechnology
, vol.24
, pp. 383-392
-
-
Kodama, Y.1
Nagaya, S.2
Shinmyo, A.3
Kato, K.4
-
57
-
-
34249744467
-
Mapping and characterization of DNase i hypersensitive sites in Arabidopsis chromatin
-
Kodama Y, Nagaya S, Shinmyo A, Kato K: Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin. Plant Cell Physiol 48: 459-470 (2007b).
-
(2007)
Plant Cell Physiol
, vol.48
, pp. 459-470
-
-
Kodama, Y.1
Nagaya, S.2
Shinmyo, A.3
Kato, K.4
-
58
-
-
84855508402
-
Enhancers and silencers: An integrated and simple model for their function
-
Kolovos P, Knoch TA, Grosveld FG, Cook PR, Papantonis A: Enhancers and silencers: an integrated and simple model for their function. Epigenetics Chromatin 5: 1 (2012).
-
(2012)
Epigenetics Chromatin
, vol.5
, pp. 1
-
-
Kolovos, P.1
Knoch, T.A.2
Grosveld, F.G.3
Cook, P.R.4
Papantonis, A.5
-
59
-
-
0034020814
-
Understanding 'active' chromatin: A historical perspective of chromatin remodeling
-
Krebs JE, Peterson CL: Understanding 'active' chromatin: a historical perspective of chromatin remodeling. Crit Rev Eukaryot Gene Expr 10: 1-12 (2000).
-
(2000)
Crit Rev Eukaryot Gene Expr
, vol.10
, pp. 1-12
-
-
Krebs, J.E.1
Peterson, C.L.2
-
60
-
-
84871294329
-
Methylome of DNase i sensitive chromatin in Populus trichocarpa shoot apical meristematic cells: A simplified approach revealing characteristics of gene-body DNA methylation in open chromatin state
-
Lafon-Placette C, Faivre-Rampant P, Delaunay A, Street N, Brignolas F, et al: Methylome of DNase I sensitive chromatin in Populus trichocarpa shoot apical meristematic cells: a simplified approach revealing characteristics of gene-body DNA methylation in open chromatin state. New Phytol 197: 416-430 (2013).
-
(2013)
New Phytol
, vol.197
, pp. 416-430
-
-
Lafon-Placette, C.1
Faivre-Rampant, P.2
Delaunay, A.3
Street, N.4
Brignolas, F.5
-
61
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, et al: Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326: 289-293 (2009).
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
Van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
-
62
-
-
26844485822
-
Analysis of chromatin structure in the control regions of the Chlamydomonas HSP70A and RBCS2 genes
-
Lodha M, Schroda M: Analysis of chromatin structure in the control regions of the Chlamydomonas HSP70A and RBCS2 genes. Plant Mol Biol 59: 501-513 (2005).
-
(2005)
Plant Mol Biol
, vol.59
, pp. 501-513
-
-
Lodha, M.1
Schroda, M.2
-
63
-
-
84906794082
-
Chromatin structure of heatshock-inducible genes and abscisic acid-inducible genes in wheat
-
Loer DS, Spiker S: Chromatin structure of heatshock-inducible genes and abscisic acid-inducible genes in wheat. Physiologia Plantarum 86: 77-84 (1992).
-
(1992)
Physiologia Plantarum
, vol.86
, pp. 77-84
-
-
Loer, D.S.1
Spiker, S.2
-
64
-
-
0021771501
-
Organization of the GAL1-GAL10 intergenic control region chromatin
-
Lohr D: Organization of the GAL1-GAL10 intergenic control region chromatin. Nucleic Acids Res 12: 8457-8474 (1984).
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 8457-8474
-
-
Lohr, D.1
-
65
-
-
66449105851
-
Tissue-and expression levelspecific chromatin looping at maize B1 epialleles
-
Louwers M, Bader R, Haring M, van Driel R, de Laat W, et al: Tissue-and expression levelspecific chromatin looping at maize B1 epialleles. Plant Cell 21: 832-842 (2009).
-
(2009)
Plant Cell
, vol.21
, pp. 832-842
-
-
Louwers, M.1
Bader, R.2
Haring, M.3
Van Driel, R.4
De Laat, W.5
-
66
-
-
38049162037
-
Tracking chromatin states using controlled DNase i treatment and real-time PCR
-
Martins RP, Platts AE, Krawetz SA: Tracking chromatin states using controlled DNase I treatment and real-time PCR. Cell Mol Biol Lett 12: 545-555 (2007).
-
(2007)
Cell Mol Biol Lett
, vol.12
, pp. 545-555
-
-
Martins, R.P.1
Platts, A.E.2
Krawetz, S.A.3
-
67
-
-
0020960251
-
Methylation status and DNase i sensitivity of immunoglobulin genes: Changes associated with rearrangement
-
Mather EL, Perry RP: Methylation status and DNase I sensitivity of immunoglobulin genes: changes associated with rearrangement. Proc Natl Acad Sci USA 80: 4689-4693 (1983).
-
(1983)
Proc Natl Acad Sci USA
, vol.80
, pp. 4689-4693
-
-
Mather, E.L.1
Perry, R.P.2
-
68
-
-
0035850725
-
Quantification of DNaseI-sensitivity by realtime PCR: Quantitative analysis of DNaseIhypersensitivity of the mouse beta-globin LCR
-
McArthur M, Gerum S, Stamatoyannopoulos G: Quantification of DNaseI-sensitivity by realtime PCR: quantitative analysis of DNaseIhypersensitivity of the mouse beta-globin LCR. J Mol Biol 313: 27-34 (2001).
-
(2001)
J Mol Biol
, vol.313
, pp. 27-34
-
-
McArthur, M.1
Gerum, S.2
Stamatoyannopoulos, G.3
-
69
-
-
0019787269
-
A 200 base pair region at the 5 end of the chicken adult beta-globin gene is accessible to nuclease digestion
-
McGhee JD, Wood WI, Dolan M, Engel JD, Felsenfeld G: A 200 base pair region at the 5 end of the chicken adult beta-globin gene is accessible to nuclease digestion. Cell 27: 45-55 (1981).
-
(1981)
Cell
, vol.27
, pp. 45-55
-
-
McGhee, J.D.1
Wood, W.I.2
Dolan, M.3
Engel, J.D.4
Felsenfeld, G.5
-
70
-
-
0020804586
-
A transposable element inserted just 5 to a Drosophila glue protein gene alters gene expression and chromatin structure
-
McGinnis W, Shermoen AW, Beckendorf SK: A transposable element inserted just 5 to a Drosophila glue protein gene alters gene expression and chromatin structure. Cell 34: 75-84 (1983).
-
(1983)
Cell
, vol.34
, pp. 75-84
-
-
McGinnis, W.1
Shermoen, A.W.2
Beckendorf, S.K.3
-
71
-
-
79957679448
-
Epigenetic contribution to stress adaptation in plants
-
Mirouze M, Paszkowski J: Epigenetic contribution to stress adaptation in plants. Curr Opin Plant Biol 14: 267-274 (2011).
-
(2011)
Curr Opin Plant Biol
, vol.14
, pp. 267-274
-
-
Mirouze, M.1
Paszkowski, J.2
-
72
-
-
36549061004
-
RNA polymerase is poised for activation across the genome
-
Muse GW, Gilchrist DA, Nechaev S, Shah R, Parker JS, et al: RNA polymerase is poised for activation across the genome. Nat Genet 39: 1507-1511 (2007).
-
(2007)
Nat Genet
, vol.39
, pp. 1507-1511
-
-
Muse, G.W.1
Gilchrist, D.A.2
Nechaev, S.3
Shah, R.4
Parker, J.S.5
-
73
-
-
84865840434
-
Predicting cell-type-specific gene expression from regions of open chromatin
-
Natarajan A, Yardimci GG, Sheffield NC, Crawford GE, Ohler U: Predicting cell-type-specific gene expression from regions of open chromatin. Genome Res 22: 1711-1722 (2012).
-
(2012)
Genome Res
, vol.22
, pp. 1711-1722
-
-
Natarajan, A.1
Yardimci, G.G.2
Sheffield, N.C.3
Crawford, G.E.4
Ohler, U.5
-
74
-
-
0022642945
-
Transcriptional regulation of the human cytomegalovirus major immediate-early gene is associated with induction of DNase I-hypersensitive sites
-
Nelson JA, Groudine M: Transcriptional regulation of the human cytomegalovirus major immediate-early gene is associated with induction of DNase I-hypersensitive sites. Mol Cell Biol 6: 452-461 (1986).
-
(1986)
Mol Cell Biol
, vol.6
, pp. 452-461
-
-
Nelson, J.A.1
Groudine, M.2
-
75
-
-
84865708757
-
An expansive human regulatory lexicon encoded in transcription factor footprints
-
Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, et al: An expansive human regulatory lexicon encoded in transcription factor footprints. Nature 489: 83-90 (2012).
-
(2012)
Nature
, vol.489
, pp. 83-90
-
-
Neph, S.1
Vierstra, J.2
Stergachis, A.B.3
Reynolds, A.P.4
Haugen, E.5
-
76
-
-
0023042029
-
Mapping of endogenous nuclease-sensitive regions and of putative topoisomerase sites of action along the chromatin of Dictyostelium ribosomal RNA genes
-
Ness PJ, Parish RW, Koller T: Mapping of endogenous nuclease-sensitive regions and of putative topoisomerase sites of action along the chromatin of Dictyostelium ribosomal RNA genes. J Mol Biol 188: 287-300 (1986).
-
(1986)
J Mol Biol
, vol.188
, pp. 287-300
-
-
Ness, P.J.1
Parish, R.W.2
Koller, T.3
-
77
-
-
79952901680
-
Enhancer function: New insights into the regulation of tissue-specific gene expression
-
Ong CT, Corces VG: Enhancer function: new insights into the regulation of tissue-specific gene expression. Nat Rev Genet 12: 283-293 (2011).
-
(2011)
Nat Rev Genet
, vol.12
, pp. 283-293
-
-
Ong, C.T.1
Corces, V.G.2
-
78
-
-
38849121606
-
Cohesins functionally associate with CTCF on mammalian chromosome arms
-
Parelho V, Hadjur S, Spivakov M, Leleu M, Sauer S, et al: Cohesins functionally associate with CTCF on mammalian chromosome arms. Cell 132: 422-433 (2008).
-
(2008)
Cell
, vol.132
, pp. 422-433
-
-
Parelho, V.1
Hadjur, S.2
Spivakov, M.3
Leleu, M.4
Sauer, S.5
-
79
-
-
0025735111
-
Chromatin differences between active and inactive X chromosomes revealed by genomic footprinting of permeabilized cells using DNase i and ligation-mediated PCR
-
Pfeifer GP, Riggs AD: Chromatin differences between active and inactive X chromosomes revealed by genomic footprinting of permeabilized cells using DNase I and ligation-mediated PCR. Genes Dev 5: 1102-1113 (1991).
-
(1991)
Genes Dev
, vol.5
, pp. 1102-1113
-
-
Pfeifer, G.P.1
Riggs, A.D.2
-
80
-
-
78650331647
-
Identification of functional elements and regulatory circuits by Drosophila modENCODE
-
Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, et al: Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science 330: 1787-1797 (2010).
-
(2010)
Science
, vol.330
, pp. 1787-1797
-
-
Roy, S.1
Ernst, J.2
Kharchenko, P.V.3
Kheradpour, P.4
Negre, N.5
-
81
-
-
1842532951
-
Genome-wide identification of DNaseI hypersensitive sites using active chromatin sequence libraries
-
Sabo PJ, Humbert R, Hawrylycz M, Wallace JC, Dorschner MO, et al: Genome-wide identification of DNaseI hypersensitive sites using active chromatin sequence libraries. Proc Natl Acad Sci USA 101: 4537-4542 (2004).
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 4537-4542
-
-
Sabo, P.J.1
Humbert, R.2
Hawrylycz, M.3
Wallace, J.C.4
Dorschner, M.O.5
-
82
-
-
33745416080
-
Genome-scale mapping of DNase i sensitivity in vivo using tiling DNA microarrays
-
Sabo PJ, Kuehn MS, Thurman R, Johnson BE, Johnson EM, et al: Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays. Nat Methods 3: 511-518 (2006).
-
(2006)
Nat Methods
, vol.3
, pp. 511-518
-
-
Sabo, P.J.1
Kuehn, M.S.2
Thurman, R.3
Johnson, B.E.4
Johnson, E.M.5
-
83
-
-
84872446709
-
Methods for identifying higher-order chromatin structure
-
Sajan SA, Hawkins RD: Methods for identifying higher-order chromatin structure. Annu Rev Genomics Hum Genet 13: 59-82 (2012).
-
(2012)
Annu Rev Genomics Hum Genet
, vol.13
, pp. 59-82
-
-
Sajan, S.A.1
Hawkins, R.D.2
-
84
-
-
0001315914
-
An efficient procedure for isolation of nuclei from plant protoplasts
-
Saxena P, Fowke L, J K: An efficient procedure for isolation of nuclei from plant protoplasts. Protoplasma 128: 184-189 (1985).
-
(1985)
Protoplasma
, vol.128
, pp. 184-189
-
-
Saxena, P.1
Fowke, L.J.K.2
-
85
-
-
84865777825
-
Linking disease associations with regulatory information in the human genome
-
Schaub MA, Boyle AP, Kundaje A, Batzoglou S, Snyder M: Linking disease associations with regulatory information in the human genome. Genome Res 22: 1748-1759 (2012).
-
(2012)
Genome Res
, vol.22
, pp. 1748-1759
-
-
Schaub, M.A.1
Boyle, A.P.2
Kundaje, A.3
Batzoglou, S.4
Snyder, M.5
-
86
-
-
39749145198
-
Dynamic regulation of nucleosome positioning in the human genome
-
Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, et al: Dynamic regulation of nucleosome positioning in the human genome. Cell 132: 887-898 (2008).
-
(2008)
Cell
, vol.132
, pp. 887-898
-
-
Schones, D.E.1
Cui, K.2
Cuddapah, S.3
Roh, T.Y.4
Barski, A.5
-
87
-
-
0018253714
-
Sites in simian virus 40 chromatin which are preferentially cleaved by endonucleases
-
Scott WA, Wigmore DJ: Sites in simian virus 40 chromatin which are preferentially cleaved by endonucleases. Cell 15: 1511-1518 (1978).
-
(1978)
Cell
, vol.15
, pp. 1511-1518
-
-
Scott, W.A.1
Wigmore, D.J.2
-
88
-
-
0021287571
-
Barriers to nuclease Bal31 digestion across specific sites in simian virus 40 chromatin
-
Scott WA, Walter CF, Cryer BL: Barriers to nuclease Bal31 digestion across specific sites in simian virus 40 chromatin. Mol Cell Biol 4: 604-610 (1984).
-
(1984)
Mol Cell Biol
, vol.4
, pp. 604-610
-
-
Scott, W.A.1
Walter, C.F.2
Cryer, B.L.3
-
89
-
-
0020279406
-
Expression of the mouse metallothionein-I gene alters the nuclease hypersensitivity of its 5 regulatory region
-
Senear AW, Palmiter RD: Expression of the mouse metallothionein-I gene alters the nuclease hypersensitivity of its 5 regulatory region. Cold Spring Harb Symp Quant Biol 47 Pt 1: 539-547 (1983).
-
(1983)
Cold Spring Harb Symp Quant Biol
, vol.47
, Issue.PART 1
, pp. 539-547
-
-
Senear, A.W.1
Palmiter, R.D.2
-
90
-
-
0001551408
-
Identification of silencer binding proteins from yeast: Possible roles in SIR control and DNA replication
-
Shore D, Stillman DJ, Brand AH, Nasmyth KA: Identification of silencer binding proteins from yeast: possible roles in SIR control and DNA replication. EMBO J 6: 461-467 (1987).
-
(1987)
EMBO J
, vol.6
, pp. 461-467
-
-
Shore, D.1
Stillman, D.J.2
Brand, A.H.3
Nasmyth, K.A.4
-
91
-
-
84871796810
-
Distinct modes of DNA accessibility in plant chromatin
-
Shu H, Wildhaber T, Siretskiy A, Gruissem W, Hennig L: Distinct modes of DNA accessibility in plant chromatin. Nat Commun 3: 1281 (2012).
-
(2012)
Nat Commun
, vol.3
, pp. 1281
-
-
Shu, H.1
Wildhaber, T.2
Siretskiy, A.3
Gruissem, W.4
Hennig, L.5
-
92
-
-
84880967475
-
Measuring Arabidopsis chromatin accessibility using DNase Ipolymerase chain reaction and DNase I-chip assays
-
Shu H, Gruissem W, Hennig L: Measuring Arabidopsis chromatin accessibility using DNase Ipolymerase chain reaction and DNase I-chip assays. Plant Physiol 162: 1794-1801 (2013).
-
(2013)
Plant Physiol
, vol.162
, pp. 1794-1801
-
-
Shu, H.1
Gruissem, W.2
Hennig, L.3
-
93
-
-
80053197563
-
Genome-wide analysis of the relationships between DNaseI HS, histone modifications and gene expression reveals distinct modes of chromatin domains
-
Shu W, Chen H, Bo X, Wang S: Genome-wide analysis of the relationships between DNaseI HS, histone modifications and gene expression reveals distinct modes of chromatin domains. Nucleic Acids Res 39: 7428-7443 (2011).
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 7428-7443
-
-
Shu, W.1
Chen, H.2
Bo, X.3
Wang, S.4
-
94
-
-
84880880691
-
Protocol: Optimised methodology for isolation of nuclei from leaves of species in the Solanaceae and Rosaceae families
-
Sikorskaite S, Rajamaki ML, Baniulis D, Stanys V, Valkonen JP: Protocol: optimised methodology for isolation of nuclei from leaves of species in the Solanaceae and Rosaceae families. Plant Methods 9: 31 (2013).
-
(2013)
Plant Methods
, vol.9
, pp. 31
-
-
Sikorskaite, S.1
Rajamaki, M.L.2
Baniulis, D.3
Stanys, V.4
Valkonen, J.P.5
-
95
-
-
77956276383
-
DNase-Seq: A high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells
-
Song L, Crawford GE: DNase-Seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells. Cold Spring Harb Protoc 2010:pdb prot5384 (2010).
-
(2010)
Cold Spring Harb Protoc
, vol.2010
-
-
Song, L.1
Crawford, G.E.2
-
96
-
-
80053539409
-
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
-
Song L, Zhang Z, Grasfeder LL, Boyle AP, Giresi PG, et al: Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity. Genome Res 21: 1757-1767 (2011).
-
(2011)
Genome Res
, vol.21
, pp. 1757-1767
-
-
Song, L.1
Zhang, Z.2
Grasfeder, L.L.3
Boyle, A.P.4
Giresi, P.G.5
-
97
-
-
0018867216
-
Tissue-specific DNA cleavages in the globin chromatin domain introduced by DNase i
-
Stalder J, Larsen A, Engel JD, Dolan M, Groudine M, et al: Tissue-specific DNA cleavages in the globin chromatin domain introduced by DNase I. Cell 20: 451-460 (1980).
-
(1980)
Cell
, vol.20
, pp. 451-460
-
-
Stalder, J.1
Larsen, A.2
Engel, J.D.3
Dolan, M.4
Groudine, M.5
-
98
-
-
84865121188
-
An encyclopedia of mouse DNA elements (mouse ENCODE)
-
Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, et al: An encyclopedia of mouse DNA elements (mouse ENCODE). Genome Biol 13: 418 (2012).
-
(2012)
Genome Biol
, vol.13
, pp. 418
-
-
Stamatoyannopoulos, J.A.1
Snyder, M.2
Hardison, R.3
Ren, B.4
Gingeras, T.5
-
99
-
-
78049446282
-
Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci
-
Stitzel ML, Sethupathy P, Pearson DS, Chines PS, Song L, et al: Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci. Cell Metab 12: 443-455 (2010).
-
(2010)
Cell Metab
, vol.12
, pp. 443-455
-
-
Stitzel, M.L.1
Sethupathy, P.2
Pearson, D.S.3
Chines, P.S.4
Song, L.5
-
100
-
-
0019842327
-
The switch region associated with immunoglobulin C mu genes is DNase i hypersensitive in T lymphocytes
-
Storb U, Arp B, Wilson R: The switch region associated with immunoglobulin C mu genes is DNase I hypersensitive in T lymphocytes. Nature 294: 90-92 (1981).
-
(1981)
Nature
, vol.294
, pp. 90-92
-
-
Storb, U.1
Arp, B.2
Wilson, R.3
-
101
-
-
79955760882
-
Dynamic reprogramming of chromatin accessibility during Drosophila embryo development
-
Thomas S, Li XY, Sabo PJ, Sandstrom R, Thurman RE, et al: Dynamic reprogramming of chromatin accessibility during Drosophila embryo development. Genome Biol 12:R43 (2011).
-
(2011)
Genome Biol
, vol.12
-
-
Thomas, S.1
Li, X.Y.2
Sabo, P.J.3
Sandstrom, R.4
Thurman, R.E.5
-
102
-
-
0024279597
-
DNase i sensitivity of ribosomal RNA genes in chromatin and nucleolar dominance in wheat
-
Thompson WF, Flavell RB: DNase I sensitivity of ribosomal RNA genes in chromatin and nucleolar dominance in wheat. J Mol Biol 204: 535-548 (1988).
-
(1988)
J Mol Biol
, vol.204
, pp. 535-548
-
-
Thompson, W.F.1
Flavell, R.B.2
-
103
-
-
0006832263
-
Sequence specificity of DNA topoisomerase i in the presence and absence of camptothecin
-
Thomsen B, Mollerup S, Bonven BJ, Frank R, Blocker H, et al: Sequence specificity of DNA topoisomerase I in the presence and absence of camptothecin. EMBO J 6: 1817-1823 (1987).
-
(1987)
EMBO J
, vol.6
, pp. 1817-1823
-
-
Thomsen, B.1
Mollerup, S.2
Bonven, B.J.3
Frank, R.4
Blocker, H.5
-
104
-
-
84865755978
-
The accessible chromatin landscape of the human genome
-
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, et al: The accessible chromatin landscape of the human genome. Nature 489: 75-82 (2012).
-
(2012)
Nature
, vol.489
, pp. 75-82
-
-
Thurman, R.E.1
Rynes, E.2
Humbert, R.3
Vierstra, J.4
Maurano, M.T.5
-
105
-
-
46449119367
-
A novel 6C assay uncovers Polycombmediated higher order chromatin conformations
-
Tiwari VK, Cope L, McGarvey KM, Ohm JE, Baylin SB: A novel 6C assay uncovers Polycombmediated higher order chromatin conformations. Genome Res 18: 1171-1179 (2008).
-
(2008)
Genome Res
, vol.18
, pp. 1171-1179
-
-
Tiwari, V.K.1
Cope, L.2
McGarvey, K.M.3
Ohm, J.E.4
Baylin, S.B.5
-
106
-
-
0018561078
-
An evaluation of the immediate and early sealing properties of Cavit
-
Todd MJ, Harrison JW: An evaluation of the immediate and early sealing properties of Cavit. J Endod 5: 362-367 (1979).
-
(1979)
J Endod
, vol.5
, pp. 362-367
-
-
Todd, M.J.1
Harrison, J.W.2
-
109
-
-
0018118958
-
SV40 viral minichromosome: Preferential exposure of the origin of replication as probed by restriction endonucleases
-
Varshavsky AJ, Sundin OH, Bohn MJ: SV40 viral minichromosome: preferential exposure of the origin of replication as probed by restriction endonucleases. Nucleic Acids Res 5: 3469-3477 (1978).
-
(1978)
Nucleic Acids Res
, vol.5
, pp. 3469-3477
-
-
Varshavsky, A.J.1
Sundin, O.H.2
Bohn, M.J.3
-
110
-
-
0018343180
-
A stretch of 'late' SV40 viral DNA about 400 bp long which includes the origin of replication is specifically exposed in SV40 minichromosomes
-
Varshavsky AJ, Sundin O, Bohn M: A stretch of 'late' SV40 viral DNA about 400 bp long which includes the origin of replication is specifically exposed in SV40 minichromosomes. Cell 16: 453-466 (1979).
-
(1979)
Cell
, vol.16
, pp. 453-466
-
-
Varshavsky, A.J.1
Sundin, O.2
Bohn, M.3
-
111
-
-
0029410874
-
The Arabidopsis Adh gene exhibits diverse nucleosome arrangements within a small DNase I-sensitive domain
-
Vega-Palas MA, Ferl RJ: The Arabidopsis Adh gene exhibits diverse nucleosome arrangements within a small DNase I-sensitive domain. Plant Cell 7: 1923-1932 (1995).
-
(1995)
Plant Cell
, vol.7
, pp. 1923-1932
-
-
Vega-Palas, M.A.1
Ferl, R.J.2
-
112
-
-
84864627693
-
Personal and population genomics of human regulatory variation
-
Vernot B, Stergachis AB, Maurano MT, Vierstra J, Neph S, et al: Personal and population genomics of human regulatory variation. Genome Res 22: 1689-1697 (2012).
-
(2012)
Genome Res
, vol.22
, pp. 1689-1697
-
-
Vernot, B.1
Stergachis, A.B.2
Maurano, M.T.3
Vierstra, J.4
Neph, S.5
-
113
-
-
84855820359
-
Dynamic DNA cytosine methylation in the Populus trichocarpa genome: Tissue-level variation and relationship to gene expression
-
Vining KJ, Pomraning KR, Wilhelm LJ, Priest HD, Pellegrini M, et al: Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression. BMC Genomics 13: 27 (2012).
-
(2012)
BMC Genomics
, vol.13
, pp. 27
-
-
Vining, K.J.1
Pomraning, K.R.2
Wilhelm, L.J.3
Priest, H.D.4
Pellegrini, M.5
-
114
-
-
35548990188
-
We gather together: Insulators and genome organization
-
Wallace JA, Felsenfeld G: We gather together: insulators and genome organization. Curr Opin Genet Dev 17: 400-407 (2007).
-
(2007)
Curr Opin Genet Dev
, vol.17
, pp. 400-407
-
-
Wallace, J.A.1
Felsenfeld, G.2
-
115
-
-
84891600269
-
Cytoplasmic organelle DNA preferentially inserts into open chromatin
-
Wang D, Timmis JN: Cytoplasmic organelle DNA preferentially inserts into open chromatin. Genome Biol Evol 5: 1060-1064 (2013).
-
(2013)
Genome Biol Evol
, vol.5
, pp. 1060-1064
-
-
Wang, D.1
Timmis, J.N.2
-
116
-
-
84865011424
-
Correlation between DNase i hypersensitive site distribution and gene expression in HeLa S3 cells
-
Wang YM, Zhou P, Wang LY, Li ZH, Zhang YN, et al: Correlation between DNase I hypersensitive site distribution and gene expression in HeLa S3 cells. PLoS One 7:e42414 (2012).
-
(2012)
PLoS One
, vol.7
-
-
Wang, Y.M.1
Zhou, P.2
Wang, L.Y.3
Li, Z.H.4
Zhang, Y.N.5
-
117
-
-
2342528298
-
Global survey of chromatin accessibility using DNA microarrays
-
Weil MR, Widlak P, Minna JD, Garner HR: Global survey of chromatin accessibility using DNA microarrays. Genome Res 14: 1374-1381 (2004).
-
(2004)
Genome Res
, vol.14
, pp. 1374-1381
-
-
Weil, M.R.1
Widlak, P.2
Minna, J.D.3
Garner, H.R.4
-
118
-
-
0345938187
-
Isolation of a subclass of nuclear proteins responsible for conferring a DNase I-sensitive structure on globin chromatin
-
Weisbrod S, Weintraub H: Isolation of a subclass of nuclear proteins responsible for conferring a DNase I-sensitive structure on globin chromatin. Proc Natl Acad Sci USA 76: 630-634 (1979).
-
(1979)
Proc Natl Acad Sci USA
, vol.76
, pp. 630-634
-
-
Weisbrod, S.1
Weintraub, H.2
-
119
-
-
84880051962
-
DNase-Seq predicts regions of rotational nucleosome stability across diverse human cell types
-
Winter DR, Song L, Mukherjee S, Furey TS, Crawford GE: DNase-Seq predicts regions of rotational nucleosome stability across diverse human cell types. Genome Res 23: 1118-1129 (2013).
-
(2013)
Genome Res
, vol.23
, pp. 1118-1129
-
-
Winter, D.R.1
Song, L.2
Mukherjee, S.3
Furey, T.S.4
Crawford, G.E.5
-
120
-
-
0019303186
-
The 5 ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase i
-
Wu C: The 5 ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I. Nature 286: 854-860 (1980).
-
(1980)
Nature
, vol.286
, pp. 854-860
-
-
Wu, C.1
-
121
-
-
0018458970
-
The chromatin structure of specific genes: I
-
Wu C, Bingham PM, Livak KJ, Holmgren R, Elgin SC: The chromatin structure of specific genes: I. Evidence for higher order domains of defined DNA sequence. Cell 16: 797-806 (1979).
-
(1979)
Evidence for Higher Order Domains of Defined DNA Sequence. Cell
, vol.16
, pp. 797-806
-
-
Wu, C.1
Bingham, P.M.2
Livak, K.J.3
Holmgren, R.4
Elgin, S.C.5
-
122
-
-
0022648702
-
Chromatin structure and developmental expression of the human alpha-globin cluster
-
Yagi M, Gelinas R, Elder JT, Peretz M, Papayannopoulou T, et al: Chromatin structure and developmental expression of the human alpha-globin cluster. Mol Cell Biol 6: 1108-1116 (1986).
-
(1986)
Mol Cell Biol
, vol.6
, pp. 1108-1116
-
-
Yagi, M.1
Gelinas, R.2
Elder, J.T.3
Peretz, M.4
Papayannopoulou, T.5
-
123
-
-
79952113405
-
Components and mechanisms of regulation of gene expression
-
Yilmaz A, Grotewold E: Components and mechanisms of regulation of gene expression. Methods Mol Biol 674: 23-32 (2010).
-
(2010)
Methods Mol Biol
, vol.674
, pp. 23-32
-
-
Yilmaz, A.1
Grotewold, E.2
-
124
-
-
80052284848
-
OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes
-
You JS, Kelly TK, De Carvalho DD, Taberlay PC, Liang G, et al: OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes. Proc Natl Acad Sci USA 108: 14497-14502 (2011).
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 14497-14502
-
-
You, J.S.1
Kelly, T.K.2
De Carvalho, D.D.3
Taberlay, P.C.4
Liang, G.5
-
125
-
-
36549013619
-
RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo
-
Zeitlinger J, Stark A, Kellis M, Hong JW, Nechaev S, et al: RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo. Nat Genet 39: 1512-1516 (2007).
-
(2007)
Nat Genet
, vol.39
, pp. 1512-1516
-
-
Zeitlinger, J.1
Stark, A.2
Kellis, M.3
Hong, J.W.4
Nechaev, S.5
-
126
-
-
80051564877
-
Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions
-
Zentner GE, Tesar PJ, Scacheri PC: Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions. Genome Res 21: 1273-1283 (2011).
-
(2011)
Genome Res
, vol.21
, pp. 1273-1283
-
-
Zentner, G.E.1
Tesar, P.J.2
Scacheri, P.C.3
-
127
-
-
84855309434
-
High-resolution mapping of open chromatin in the rice genome
-
Zhang W, Wu Y, Schnable JC, Zeng Z, Freeling M, et al: High-resolution mapping of open chromatin in the rice genome. Genome Res 22: 151-162 (2012a).
-
(2012)
Genome Res
, vol.22
, pp. 151-162
-
-
Zhang, W.1
Wu, Y.2
Schnable, J.C.3
Zeng, Z.4
Freeling, M.5
-
128
-
-
84865331447
-
Genome-wide identification of regulatory DNA elements and protein-binding footprints using signatures of open chromatin in Arabidopsis
-
Zhang W, Zhang T, Wu Y, Jiang J: Genome-wide identification of regulatory DNA elements and protein-binding footprints using signatures of open chromatin in Arabidopsis. Plant Cell 24: 2719-2731 (2012b).
-
(2012)
Plant Cell
, vol.24
, pp. 2719-2731
-
-
Zhang, W.1
Zhang, T.2
Wu, Y.3
Jiang, J.4
-
129
-
-
33750203582
-
Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intraand interchromosomal interactions
-
Zhao Z, Tavoosidana G, Sjolinder M, Gondor A, Mariano P, et al: Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intraand interchromosomal interactions. Nat Genet 38: 1341-1347 (2006).
-
(2006)
Nat Genet
, vol.38
, pp. 1341-1347
-
-
Zhao, Z.1
Tavoosidana, G.2
Sjolinder, M.3
Gondor, A.4
Mariano, P.5
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