-
1
-
-
77953305748
-
A structural perspective on the where, how, why, and what of nucleosome positioning
-
Arya G, Maitra A, Grigoryev SA. 2010. A structural perspective on the where, how, why, and what of nucleosome positioning. J. Biomol. Struct. Dyn. 27:803-20
-
(2010)
J. Biomol. Struct. Dyn
, vol.27
, pp. 803-820
-
-
Arya, G.1
Maitra, A.2
Grigoryev, S.A.3
-
2
-
-
70349267600
-
Mapping accessible chromatin regions using Sono-Seq
-
Auerbach RK, Euskirchen G, Rozowsky J, Lamarre-Vincent N, Moqtaderi Z, et al. 2009. Mapping accessible chromatin regions using Sono-Seq. Proc. Natl. Acad. Sci. USA 106:14926-31
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 14926-14931
-
-
Auerbach, R.K.1
Euskirchen, G.2
Rozowsky, J.3
Lamarre-Vincent, N.4
Moqtaderi, Z.5
-
3
-
-
1542328960
-
Identification and distinct regulation of yeast TATA box-containing genes
-
DOI 10.1016/S0092-8674(04)00205-3, PII S0092867404002053
-
Basehoar AD, Zanton SJ, Pugh BF. 2004. Identification and distinct regulation of yeast TATA boxcontaining genes. Cell 116:699-709 (Pubitemid 38326728)
-
(2004)
Cell
, vol.116
, Issue.5
, pp. 699-709
-
-
Basehoar, A.D.1
Zanton, S.J.2
Pugh, B.F.3
-
4
-
-
78650994865
-
The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules
-
Bau D, Sanyal A, Lajoie BR, Capriotti E, Byron M, et al. 2011. The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules. Nat. Struct. Mol. Biol. 18:107-14
-
(2011)
Nat. Struct. Mol. Biol
, vol.18
, pp. 107-114
-
-
Bau, D.1
Sanyal, A.2
Lajoie, B.R.3
Capriotti, E.4
Byron, M.5
-
5
-
-
35848951163
-
Covalent modifications of histones during development and disease pathogenesis
-
DOI 10.1038/nsmb1337, PII NSMB1337
-
Bhaumik SR, Smith E, Shilatifard A. 2007. Covalent modifications of histones during development and disease pathogenesis. Nat. Struct. Mol. Biol. 14:1008-16 (Pubitemid 350060343)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.11
, pp. 1008-1016
-
-
Bhaumik, S.R.1
Smith, E.2
Shilatifard, A.3
-
6
-
-
38649099445
-
High-Resolution Mapping and Characterization of Open Chromatin across the Genome
-
DOI 10.1016/j.cell.2007.12.014, PII S0092867407016133
-
Boyle AP, Davis S, Shulha HP, Meltzer P, Margulies EH, et al. 2008. High-resolution mapping and characterization of open chromatin across the genome. Cell 132:311-22 (Pubitemid 351172431)
-
(2008)
Cell
, vol.132
, Issue.2
, pp. 311-322
-
-
Boyle, A.P.1
Davis, S.2
Shulha, H.P.3
Meltzer, P.4
Margulies, E.H.5
Weng, Z.6
Furey, T.S.7
Crawford, G.E.8
-
7
-
-
0034130561
-
Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays
-
DOI 10.1038/76469
-
Brenner S, Johnson M, Bridgham J, GoldaG, Lloyd DH, et al. 2000. Gene expression analysis bymassively parallel signature sequencing (MPSS) on microbead arrays. Nat. Biotechnol. 18:630-34 (Pubitemid 30415296)
-
(2000)
Nature Biotechnology
, vol.18
, Issue.6
, pp. 630-634
-
-
Brenner, S.1
Johnson, M.2
Bridgham, J.3
Golda, G.4
Lloyd, D.H.5
Johnson, D.6
Luo, S.7
McCurdy, S.8
Foy, M.9
Ewan, M.10
Roth, R.11
George, D.12
Eletr, S.13
Albrecht, G.14
Vermaas, E.15
Williams, S.R.16
Moon, K.17
Burcham, T.18
Pallas, M.19
DuBridge, R.B.20
Kirchner, J.21
Fearon, K.22
Mao, J.-I.23
Corcoran, K.24
more..
-
8
-
-
26944477745
-
Structural elements of bulk chromatin within metaphase chromosomes
-
DOI 10.1007/s10577-005-1008-3
-
Caravaca JM, Cano S, Gallego I, Daban JR. 2005. Structural elements of bulk chromatin within metaphase chromosomes. Chromosome Res. 13:725-43 (Pubitemid 41476509)
-
(2005)
Chromosome Research
, vol.13
, Issue.7
, pp. 725-743
-
-
Caravaca, J.M.1
Cano, S.2
Gallego, I.3
Daban, J.-R.4
-
9
-
-
77952336238
-
Irregular orientation of nucleosomes in the well-defined chromatin plates of metaphase chromosomes
-
Castro-Hartmann P, Milla M, Daban JR. 2010. Irregular orientation of nucleosomes in the well-defined chromatin plates of metaphase chromosomes. Biochemistry 49:4043-50
-
(2010)
Biochemistry
, vol.49
, pp. 4043-4050
-
-
Castro-Hartmann, P.1
Milla, M.2
Daban, J.R.3
-
10
-
-
77954659099
-
Relationship between nucleosome positioning and DNA methylation
-
Chodavarapu RK, Feng S, Bernatavichute YV, Chen PY, Stroud H, et al. 2010. Relationship between nucleosome positioning and DNA methylation. Nature 466:388-92
-
(2010)
Nature
, vol.466
, pp. 388-392
-
-
Chodavarapu, R.K.1
Feng, S.2
Bernatavichute, Y.V.3
Chen, P.Y.4
Stroud, H.5
-
11
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
DOI 10.1038/nature06745, PII NATURE06745
-
Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, et al. 2008. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 452:215-19 (Pubitemid 351380251)
-
(2008)
Nature
, vol.452
, Issue.7184
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
Chen, Z.4
Merriman, B.5
Haudenschild, C.D.6
Pradhan, S.7
Nelson, S.F.8
Pellegrini, M.9
Jacobsen, S.E.10
-
12
-
-
33745409293
-
DNase-chip: A high-resolution method to identify DNase I hypersensitive sites using tiled microarrays
-
DOI 10.1038/nmeth888, PII N888
-
Crawford GE, Davis S, Scacheri PC, Renaud G, Halawi MJ, et al. 2006. DNase-chip: a highresolution method to identify DNase I hypersensitive sites using tiled microarrays. Nat. Methods 3:503-9 (Pubitemid 43941767)
-
(2006)
Nature Methods
, vol.3
, Issue.7
, pp. 503-509
-
-
Crawford, G.E.1
Davis, S.2
Scacheri, P.C.3
Renaud, G.4
Halawi, M.J.5
Erdos, M.R.6
Green, R.7
Meltzer, P.S.8
Wolfsberg, T.G.9
Collins, F.S.10
-
13
-
-
30044449116
-
Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)
-
DOI 10.1101/gr.4074106
-
Crawford GE, Holt IE, Whittle J, Webb BD, Tai D, et al. 2006. Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS). Genome Res. 16:123-31 (Pubitemid 43048941)
-
(2006)
Genome Research
, vol.16
, Issue.1
, pp. 123-131
-
-
Crawford, G.E.1
Holt, I.E.2
Whittle, J.3
Webb, B.D.4
Tai, D.5
Davis, S.6
Margulies, E.H.7
Chen, Y.8
Bernat, J.A.9
Ginsburg, D.10
Zhou, D.11
Luo, S.12
Vasicek, T.J.13
Daly, M.J.14
Wolfsberg, T.G.15
Collins, F.S.16
-
14
-
-
60149095014
-
Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
-
Cuddapah S, Jothi R, SchonesDE, Roh TY, Cui K, Zhao K. 2009. Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains. Genome Res. 19:24-32
-
(2009)
Genome Res
, vol.19
, pp. 24-32
-
-
Cuddapah, S.1
Jothi, R.2
Schones, D.E.3
Roh, T.Y.4
Cui, K.5
Zhao, K.6
-
16
-
-
0037083376
-
Capturing chromosome conformation
-
DOI 10.1126/science.1067799
-
Dekker J, Rippe K, Dekker M, Kleckner N. 2002. Capturing chromosome conformation. Science 295:1306-11 (Pubitemid 34157624)
-
(2002)
Science
, vol.295
, Issue.5558
, pp. 1306-1311
-
-
Dekker, J.1
Rippe, K.2
Dekker, M.3
Kleckner, N.4
-
17
-
-
33749400168
-
Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements
-
DOI 10.1101/gr.5571506
-
Dostie J, Richmond TA, Arnaout RA, Selzer RR, Lee WL, et al. 2006. Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements. Genome Res. 16:1299-309 (Pubitemid 44506963)
-
(2006)
Genome Research
, vol.16
, Issue.10
, pp. 1299-1309
-
-
Dostie, J.1
Richmond, T.A.2
Arnaout, R.A.3
Selzer, R.R.4
Lee, W.L.5
Honan, T.A.6
Rubio, E.D.7
Krumm, A.8
Lamb, J.9
Nusbaum, C.10
Green, R.D.11
Dekker, J.12
-
18
-
-
77952744854
-
A three-dimensional model of the yeast genome
-
Duan Z, Andronescu M, Schutz K, McIlwain S, Kim YJ, et al. 2010. A three-dimensional model of the yeast genome. Nature 465:363-67
-
(2010)
Nature
, vol.465
, pp. 363-367
-
-
Duan, Z.1
Andronescu, M.2
Schutz, K.3
McIlwain, S.4
Kim, Y.J.5
-
19
-
-
0020681351
-
Architecture of metaphase chromosomes and chromosome scaffolds
-
DOI 10.1083/jcb.96.1.84
-
Earnshaw WC, Laemmli UK. 1983. Architecture of metaphase chromosomes and chromosome scaffolds. J. Cell Biol. 96:84-93 (Pubitemid 13155564)
-
(1983)
Journal of Cell Biology
, vol.96
, Issue.1
, pp. 84-93
-
-
Earnshaw, W.C.1
Laemmli, U.K.2
-
20
-
-
68949213578
-
Insights from genomic profiling of transcription factors
-
Farnham PJ. 2009. Insights from genomic profiling of transcription factors. Nat. Rev. Genet. 10:605-16
-
(2009)
Nat. Rev. Genet
, vol.10
, pp. 605-616
-
-
Farnham, P.J.1
-
21
-
-
0017755951
-
Structure of nucleosome core particles of chromatin
-
Finch JT, Lutter LC, RhodesD, Brown RS, Rushton B, et al. 1977. Structure of nucleosome core particles of chromatin. Nature 269:29-36
-
(1977)
Nature
, vol.269
, pp. 29-36
-
-
Finch, J.T.1
Lutter, L.C.2
Rhodesd Brown, R.S.3
Rushton, B.4
-
22
-
-
48249153426
-
The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome
-
Fu Y, Sinha M, Peterson CL, Weng Z. 2008. The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. PLoS Genet. 4:e1000138
-
(2008)
PLoS Genet
, vol.4
-
-
Fu, Y.1
Sinha, M.2
Peterson, C.L.3
Weng, Z.4
-
23
-
-
70449103609
-
An oestrogen-receptor-α-bound human chromatin interactome
-
Fullwood MJ, Liu MH, Pan YF, Liu J, Xu H, et al. 2009. An oestrogen-receptor-α-bound human chromatin interactome. Nature 462:58-64
-
(2009)
Nature
, vol.462
, pp. 58-64
-
-
Fullwood, M.J.1
Liu, M.H.2
Pan, Y.F.3
Liu, J.4
Xu, H.5
-
24
-
-
66149167455
-
ChIP-based methods for the identification of long-range chromatin interactions
-
Fullwood MJ, Ruan Y. 2009. ChIP-based methods for the identification of long-range chromatin interactions. J. Cell. Biochem. 107:30-39
-
(2009)
J. Cell. Biochem
, vol.107
, pp. 30-39
-
-
Fullwood, M.J.1
Ruan, Y.2
-
26
-
-
62949147085
-
Dense chromatin plates in metaphase chromosomes
-
Gallego I, Castro-Hartmann P, Caravaca JM, Cano S, Daban JR. 2009. Dense chromatin plates in metaphase chromosomes. Eur. Biophys. J. 38:503-22
-
(2009)
Eur. Biophys. J
, vol.38
, pp. 503-522
-
-
Gallego, I.1
Castro-Hartmann, P.2
Caravaca, J.M.3
Cano, S.4
Daban, J.R.5
-
27
-
-
77649086970
-
Amap of open chromatin in human pancreatic islets
-
Gaulton KJ, Nammo T, Pasquali L, Simon JM, Giresi PG, et al. 2010. Amap of open chromatin in human pancreatic islets. Nat. Genet. 42:255-59
-
(2010)
Nat. Genet
, vol.42
, pp. 255-259
-
-
Gaulton, K.J.1
Nammo, T.2
Pasquali, L.3
Simon, J.M.4
Giresi, P.G.5
-
28
-
-
34250369627
-
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin
-
DOI 10.1101/gr.5533506
-
Giresi PG, Kim J, McDaniell RM, Iyer VR, Lieb JD. 2007. FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin. Genome Res. 17:877-85 (Pubitemid 46919722)
-
(2007)
Genome Research
, vol.17
, Issue.6
, pp. 877-885
-
-
Giresi, P.G.1
Kim, J.2
McDaniell, R.M.3
Iyer, V.R.4
Lieb, J.D.5
-
29
-
-
32544451924
-
Variant of transcription factor 7-like 2 (TCF7L2) gene confers risk of type 2 diabetes
-
Grant SF, Thorleifsson G, Reynisdottir I, Benediktsson R, Manolescu A, et al. 2006. Variant of transcription factor 7-like 2 (TCF7L2) gene confers risk of type 2 diabetes. Nat. Genet. 38:320-23
-
(2006)
Nat. Genet
, vol.38
, pp. 320-323
-
-
Grant, S.F.1
Thorleifsson, G.2
Reynisdottir, I.3
Benediktsson, R.4
Manolescu, A.5
-
30
-
-
79959699992
-
CTCF-mediated functional chromatin interactome in pluripotent cells
-
Handoko L, Xu H, Li G, Ngan CY, Chew E, et al. 2011. CTCF-mediated functional chromatin interactome in pluripotent cells. Nat. Genet. 43:630-38
-
(2011)
Nat. Genet
, vol.43
, pp. 630-638
-
-
Handoko, L.1
Xu, H.2
Li, G.3
Ngan, C.Y.4
Chew, E.5
-
31
-
-
77953809032
-
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells
-
Hawkins RD, Hon GC, Lee LK, NgoQ, Lister R, et al. 2010. Distinct epigenomic landscapes of pluripotent and lineage-committed human cells. Cell Stem Cell 6:479-91
-
(2010)
Cell Stem Cell
, vol.6
, pp. 479-491
-
-
Hawkins, R.D.1
Hon, G.C.2
Lee, L.K.3
Ngoq Lister, R.4
-
32
-
-
80053622239
-
Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency
-
Hawkins RD, Hon GC, Yang C, Antosiewicz-Bourget JE, Lee LK, et al. 2011. Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency. Cell Res. 21:1393-409
-
(2011)
Cell Res
, vol.21
, pp. 1393-1409
-
-
Hawkins, R.D.1
Hon, G.C.2
Yang, C.3
Antosiewicz-Bourget, J.E.4
Lee, L.K.5
-
33
-
-
77957694480
-
Genome-wide location analysis by pull down of in vivo biotinylated transcription factors
-
20: 1-15
-
He A, Pu WT. 2010. Genome-wide location analysis by pull down of in vivo biotinylated transcription factors. Curr. Protoc. Mol. Biol. 92:21. 20. 1-15
-
(2010)
Curr. Protoc. Mol. Biol.
, vol.92
, pp. 21
-
-
He, A.1
Pu, W.T.2
-
34
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
Heintzman ND, Hon GC, Hawkins RD, Kheradpour P, Stark A, et al. 2009. Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 459:108-12
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
Hon, G.C.2
Hawkins, R.D.3
Kheradpour, P.4
Stark, A.5
-
35
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
DOI 10.1038/ng1966, PII NG1966
-
Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, et al. 2007. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat. Genet. 39:311-18 (Pubitemid 46328487)
-
(2007)
Nature Genetics
, vol.39
, Issue.3
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
Barrera, L.O.7
Van Calcar, S.8
Qu, C.9
Ching, K.A.10
Wang, W.11
Weng, Z.12
Green, R.D.13
Crawford, G.E.14
Ren, B.15
-
36
-
-
33846596193
-
Refining the impact of TCF7L2 gene variants on type 2 diabetes and adaptive evolution
-
DOI 10.1038/ng1960, PII NG1960
-
Helgason A, Palsson S, ThorleifssonG, Grant SF, EmilssonV, et al. 2007. Refining the impact of TCF7L2 gene variants on type 2 diabetes and adaptive evolution. Nat. Genet. 39:218-25 (Pubitemid 46184353)
-
(2007)
Nature Genetics
, vol.39
, Issue.2
, pp. 218-225
-
-
Helgason, A.1
Palsson, S.2
Thorleifsson, G.3
Grant, S.F.A.4
Emilsson, V.5
Gunnarsdottir, S.6
Adeyemo, A.7
Chen, Y.8
Chen, G.9
Reynisdottir, I.10
Benediktsson, R.11
Hinney, A.12
Hansen, T.13
Andersen, G.14
Borch-Johnsen, K.15
Jorgensen, T.16
Schafer, H.17
Faruque, M.18
Doumatey, A.19
Zhou, J.20
Wilensky, R.L.21
Reilly, M.P.22
Rader, D.J.23
Bagger, Y.24
Christiansen, C.25
Sigurdsson, G.26
Hebebrand, J.27
Pedersen, O.28
Thorsteinsdottir, U.29
Gulcher, J.R.30
Kong, A.31
Rotimi, C.32
Stefansson, K.33
more..
-
37
-
-
81055141350
-
Epigenome characterization at single base-pair resolution
-
Henikoff JG, Belsky JA, Krassovsky K, Macalpine DM, Henikoff S. 2011. Epigenome characterization at single base-pair resolution. Proc. Natl. Acad. Sci. USA 108:18318-23
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 18318-18323
-
-
Henikoff, J.G.1
Belsky, J.A.2
Krassovsky, K.3
MacAlpine, D.M.4
Henikoff, S.5
-
38
-
-
0015786441
-
Chromatin sub-structure. The digestion of chromatinDNAat regularly spaced sites by a nuclear deoxyribonuclease
-
Hewish DR, Burgoyne LA. 1973. Chromatin sub-structure. The digestion of chromatinDNAat regularly spaced sites by a nuclear deoxyribonuclease. Biochem. Biophys. Res.commun. 52:504-10
-
(1973)
Biochem. Biophys. Res.commun
, vol.52
, pp. 504-510
-
-
Hewish, D.R.1
Burgoyne, L.A.2
-
39
-
-
33749153628
-
Nucleosome positions predicted through comparative genomics
-
DOI 10.1038/ng1878, PII NG1878
-
Ioshikhes IP, Albert I, Zanton SJ, Pugh BF. 2006. Nucleosome positions predicted through comparative genomics. Nat. Genet. 38:1210-15 (Pubitemid 44470369)
-
(2006)
Nature Genetics
, vol.38
, Issue.10
, pp. 1210-1215
-
-
Ioshikhes, I.P.1
Albert, I.2
Zanton, S.J.3
Pugh, B.F.4
-
40
-
-
33845298285
-
Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin
-
DOI 10.1101/gr.5560806
-
Johnson SM, Tan FJ, McCullough HL, Riordan DP, Fire AZ. 2006. Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin. Genome Res. 16:1505-16 (Pubitemid 44878489)
-
(2006)
Genome Research
, vol.16
, Issue.12
, pp. 1505-1516
-
-
Johnson, S.M.1
Tan, F.J.2
McCullough, H.L.3
Riordan, D.P.4
Fire, A.Z.5
-
41
-
-
62649085538
-
The DNA-encoded nucleosome organization of a eukaryotic genome
-
Kaplan N, Moore IK, Fondufe-Mittendorf Y, Gossett AJ, Tillo D, et al. 2009. The DNA-encoded nucleosome organization of a eukaryotic genome. Nature 458:362-66
-
(2009)
Nature
, vol.458
, pp. 362-366
-
-
Kaplan, N.1
Moore, I.K.2
Fondufe-Mittendorf, Y.3
Gossett, A.J.4
Tillo, D.5
-
42
-
-
0019401409
-
DNase i hypersensitive sites in Drosophila chromatin occur at the 5 ends of regions of transcription
-
KeeneMA, Corces V, Lowenhaupt K, Elgin SC. 1981. DNase I hypersensitive sites in Drosophila chromatin occur at the 5 ends of regions of transcription. Proc. Natl. Acad. Sci. USA 78:143-46
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.78
, pp. 143-146
-
-
Keene, M.A.1
Corces, V.2
Lowenhaupt, K.3
Elgin, S.C.4
-
43
-
-
33947201809
-
Analysis of the Vertebrate Insulator Protein CTCF-Binding Sites in the Human Genome
-
DOI 10.1016/j.cell.2006.12.048, PII S009286740700205X
-
Kim TH, Abdullaev ZK, Smith AD, Ching KA, Loukinov DI, et al. 2007. Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell 128:1231-45 (Pubitemid 46427876)
-
(2007)
Cell
, vol.128
, Issue.6
, pp. 1231-1245
-
-
Kim, T.H.1
Abdullaev, Z.K.2
Smith, A.D.3
Ching, K.A.4
Loukinov, D.I.5
Green, RolandD.6
Zhang, M.Q.7
Lobanenkov, V.V.8
Ren, B.9
-
44
-
-
61349098460
-
Differential chromatinmarking of introns and expressed exons by H3K36me3
-
Kolasinska-Zwierz P, Down T, Latorre I, LiuT, Liu XS, Ahringer J. 2009. Differential chromatinmarking of introns and expressed exons by H3K36me3. Nat. Genet. 41:376-81
-
(2009)
Nat. Genet
, vol.41
, pp. 376-381
-
-
Kolasinska-Zwierz, P.1
Down, T.2
Latorre, I.3
Liu, T.4
Liu, X.S.5
Ahringer, J.6
-
45
-
-
0016221697
-
Chromatin structure: A repeating unit of histones and DNA
-
Kornberg RD. 1974. Chromatin structure: a repeating unit of histones and DNA. Science 184:868-71
-
(1974)
Science
, vol.184
, pp. 868-871
-
-
Kornberg, R.D.1
-
46
-
-
77953191060
-
ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing
-
Li G, Fullwood MJ, Xu H, Mulawadi FH, Velkov S, et al. 2010. ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing. Genome Biol. 11:R22
-
(2010)
Genome Biol
, vol.11
-
-
Li, G.1
Fullwood, M.J.2
Xu, H.3
Mulawadi, F.H.4
Velkov, S.5
-
47
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, et al. 2009.comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326:289-93
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
Van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
-
48
-
-
0032512794
-
New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning
-
DOI 10.1006/jmbi.1997.1494
-
Lowary PT, Widom J. 1998. New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning. J. Mol. Biol. 276:19-42 (Pubitemid 28085408)
-
(1998)
Journal of Molecular Biology
, vol.276
, Issue.1
, pp. 19-42
-
-
Lowary, P.T.1
Widom, J.2
-
49
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 A resolution
-
DOI 10.1038/38444
-
Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ. 1997. Crystal structure of the nucleosome core particle at 2. 8 A resolution. Nature 389:251-60 (Pubitemid 27406632)
-
(1997)
Nature
, vol.389
, Issue.6648
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
50
-
-
81755160905
-
PBX1 genomic pioneer function drives ERα signaling underlying progression in breast cancer
-
Magnani L, Ballantyne EB, Zhang X, Lupien M. 2011. PBX1 genomic pioneer function drives ERα signaling underlying progression in breast cancer. PLoS Genet. 7:e1002368
-
(2011)
PLoS Genet
, vol.7
-
-
Magnani, L.1
Ballantyne, E.B.2
Zhang, X.3
Lupien, M.4
-
51
-
-
46449112319
-
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
-
DOI 10.1101/gr.078261.108
-
Mavrich TN, Ioshikhes IP, Venters BJ, Jiang C, Tomsho LP, et al. 2008. A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. Genome Res. 18:1073-83 (Pubitemid 351931158)
-
(2008)
Genome Research
, vol.18
, Issue.7
, pp. 1073-1083
-
-
Mavrich, T.N.1
Ioshikhes, I.P.2
Venters, B.J.3
Jiang, C.4
Tomsho, L.P.5
Qi, J.6
Schuster, S.C.7
Albert, I.8
Pugh, B.F.9
-
52
-
-
43749099875
-
Nucleosome organization in the Drosophila genome
-
DOI 10.1038/nature06929, PII NATURE06929
-
Mavrich TN, Jiang C, Ioshikhes IP, Li X, Venters BJ, et al. 2008. Nucleosome organization in the Drosophila genome. Nature 453:358-62 (Pubitemid 351693129)
-
(2008)
Nature
, vol.453
, Issue.7193
, pp. 358-362
-
-
Mavrich, T.N.1
Jiang, C.2
Ioshikhes, I.P.3
Li, X.4
Venters, B.J.5
Zanton, S.J.6
Tomsho, L.P.7
Qi, J.8
Glaser, R.L.9
Schuster, S.C.10
Gilmour, D.S.11
Albert, I.12
Pugh, B.F.13
-
53
-
-
79960956864
-
A functional variant at a prostate cancer predisposition locus at 8q24 is associated with PVT1 expression
-
Meyer KB, Maia AT, O'Reilly M, Ghoussaini M, Prathalingam R, et al. 2011. A functional variant at a prostate cancer predisposition locus at 8q24 is associated with PVT1 expression. PLoS Genet. 7:e1002165
-
(2011)
PLoS Genet
, vol.7
-
-
Meyer, K.B.1
Maia, A.T.2
O'Reilly, M.3
Ghoussaini, M.4
Prathalingam, R.5
-
54
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
DOI 10.1038/nature06008, PII NATURE06008
-
Mikkelsen TS, KuM, Jaffe DB, Issac B, Lieberman E, et al. 2007. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448:553-60 (Pubitemid 47206934)
-
(2007)
Nature
, vol.448
, Issue.7153
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.-K.9
Koche, R.P.10
Lee, W.11
Mendenhall, E.12
O'Donovan, A.13
Presser, A.14
Russ, C.15
Xie, X.16
Meissner, A.17
Wernig, M.18
Jaenisch, R.19
Nusbaum, C.20
Lander, E.S.21
Bernstein, B.E.22
more..
-
55
-
-
0038652118
-
Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin
-
DOI 10.1073/pnas.1131966100
-
Nagy PL, Cleary ML, Brown PO, Lieb JD. 2003. Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin. Proc. Natl. Acad. Sci. USA 100:6364-69 (Pubitemid 36666587)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.11
, pp. 6364-6369
-
-
Nagy, P.L.1
Cleary, M.L.2
Brown, P.O.3
Lieb, J.D.4
-
56
-
-
80054764373
-
Mapping open chromatin with formaldehyde-assisted isolation of regulatory elements
-
Nammo T, Rodriguez-Segui SA, Ferrer J. 2011. Mapping open chromatin with formaldehyde-assisted isolation of regulatory elements. Methods Mol. Biol. 791:287-96
-
(2011)
Methods Mol. Biol
, vol.791
, pp. 287-296
-
-
Nammo, T.1
Rodriguez-Segui, S.A.2
Ferrer, J.3
-
57
-
-
0017358203
-
Action of micrococcal nuclease on chromatin and the location of histone H1
-
DOI 10.1016/S0022-2836(77)80019-3
-
Noll M, Kornberg RD. 1977. Action of micrococcal nuclease on chromatin and the location of histone H1. J. Mol. Biol. 109:393-404 (Pubitemid 8034998)
-
(1977)
Journal of Molecular Biology
, vol.109
, Issue.3
, pp. 393-404
-
-
Noll, M.1
Kornberg, R.D.2
-
58
-
-
0015964401
-
Spheroid chromatin units (v bodies
-
Olins AL, Olins DE. 1974. Spheroid chromatin units (v bodies). Science 183:330-32
-
(1974)
Science
, vol.183
, pp. 330-332
-
-
Olins, A.L.1
Olins, D.E.2
-
59
-
-
0016687530
-
Electron microscopic and biochemical evidence that chromatin structure is a repeating unit
-
Oudet P, Gross-Bellard M, Chambon P. 1975. Electron microscopic and biochemical evidence that chromatin structure is a repeating unit. Cell 4:281-300
-
(1975)
Cell
, vol.4
, pp. 281-300
-
-
Oudet, P.1
Gross-Bellard, M.2
Chambon, P.3
-
60
-
-
0141730403
-
The β-globin nuclear compartment in development and erythroid differentiation
-
DOI 10.1038/ng1244
-
Palstra RJ, Tolhuis B, Splinter E, Nijmeijer R, Grosveld F, de Laat W. 2003. The β-globin nuclear compartment in development and erythroid differentiation. Nat. Genet. 35:190-94 (Pubitemid 37187640)
-
(2003)
Nature Genetics
, vol.35
, Issue.2
, pp. 190-194
-
-
Palstra, R.-J.1
Tolhuis, B.2
Splinter, E.3
Nijmeijer, R.4
Grosveld, F.5
De Laat, W.6
-
61
-
-
34548434716
-
Whole-Genome Analysis of Histone H3 Lysine 4 and Lysine 27 Methylation in Human Embryonic Stem Cells
-
DOI 10.1016/j.stem.2007.08.003, PII S1934590907001221
-
Pan G, Tian S, Nie J, Yang C, Ruotti V, et al. 2007. Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells. Cell Stem Cell 1:299-312 (Pubitemid 47355329)
-
(2007)
Cell Stem Cell
, vol.1
, Issue.3
, pp. 299-312
-
-
Pan, G.1
Tian, S.2
Nie, J.3
Yang, C.4
Ruotti, V.5
Wei, H.6
Jonsdottir, G.A.7
Stewart, R.8
Thomson, J.A.9
-
62
-
-
70349312354
-
ChIP-seq: Advantages and challenges of amaturing technology
-
Park PJ. 2009. ChIP-seq: advantages and challenges of amaturing technology. Nat. Rev. Genet. 10:669-80
-
(2009)
Nat. Rev. Genet
, vol.10
, pp. 669-680
-
-
Park, P.J.1
-
63
-
-
0024599571
-
In vivo protein binding sites and nuclease hypersensitivity in the promoter region of a cell cycle regulated human H3 histone gene
-
Pauli U, Chrysogelos S, Nick H, Stein G, Stein J. 1989. In vivo protein binding sites and nuclease hypersensitivity in the promoter region of a cell cycle regulated humanH3 histone gene. Nucleic Acids Res. 17:2333-50 (Pubitemid 19094014)
-
(1989)
Nucleic Acids Research
, vol.17
, Issue.6
, pp. 2333-2350
-
-
Pauli, U.1
Chrysogelos, S.2
Nick, H.3
Stein, G.4
Stein, J.5
-
64
-
-
0017652886
-
The structure of histone-depleted metaphase chromosomes
-
Paulson JR, LaemmliUK. 1977. The structure of histone-depleted metaphase chromosomes. Cell 12:817-28
-
(1977)
Cell
, vol.12
, pp. 817-828
-
-
Paulson, J.R.1
Laemmli, U.K.2
-
65
-
-
84857190176
-
Human tRNA genes function as chromatin insulators
-
Raab JR, Chiu J, Zhu J, Katzman S, Kurukuti S, et al. 2011. Human tRNA genes function as chromatin insulators. EMBO J. 31:330-50
-
(2011)
EMBO J
, vol.31
, pp. 330-350
-
-
Raab, J.R.1
Chiu, J.2
Zhu, J.3
Katzman, S.4
Kurukuti, S.5
-
66
-
-
0037992395
-
The structure of DNA in the nucleosome core
-
DOI 10.1038/nature01595
-
Richmond TJ, Davey CA. 2003. The structure of DNA in the nucleosome core. Nature 423:145-50 (Pubitemid 36569532)
-
(2003)
Nature
, vol.423
, Issue.6936
, pp. 145-150
-
-
Richmond, T.J.1
Davey, C.A.2
-
67
-
-
33646242052
-
EM measurements define the dimensions of the "30-nm" chromatin fiber: Evidence for a compact, interdigitated structure
-
Robinson PJ, Fairall L, Huynh VA, Rhodes D. 2006. EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure. Proc. Natl. Acad. Sci. USA 103:6506-11
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 6506-6511
-
-
Robinson, P.J.1
Fairall, L.2
Huynh, V.A.3
Rhodes, D.4
-
68
-
-
33745416080
-
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays
-
DOI 10.1038/nmeth890, PII N890
-
Sabo PJ, Kuehn MS, Thurman R, Johnson BE, Johnson EM, et al. 2006. Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays. Nat. Methods 3:511-18 (Pubitemid 43941768)
-
(2006)
Nature Methods
, vol.3
, Issue.7
, pp. 511-518
-
-
Sabo, P.J.1
Kuehn, M.S.2
Thurman, R.3
Johnson, B.E.4
Johnson, E.M.5
Cao, H.6
Yu, M.7
Rosenzweig, E.8
Goldy, J.9
Haydock, A.10
Weaver, M.11
Shafer, A.12
Lee, K.13
Neri, F.14
Humbert, R.15
Singer, M.A.16
Richmond, T.A.17
Dorschner, M.O.18
McArthur, M.19
Hawrylycz, M.20
Green, R.D.21
Navas, P.A.22
Noble, W.S.23
Stamatoyannopoulos, J.A.24
more..
-
69
-
-
21844436803
-
X-ray structure of a tetranucleosome and its implications for the chromatin fibre
-
DOI 10.1038/nature03686
-
Schalch T, Duda S, Sargent DF, Richmond TJ. 2005. X-ray structure of a tetranucleosome and its implications for the chromatin fibre. Nature 436:138-41 (Pubitemid 40966200)
-
(2005)
Nature
, vol.436
, Issue.7047
, pp. 138-141
-
-
Schalch, T.1
Duda, S.2
Sargent, D.F.3
Richmond, T.J.4
-
70
-
-
39749145198
-
Dynamic Regulation of Nucleosome Positioning in the Human Genome
-
DOI 10.1016/j.cell.2008.02.022, PII S0092867408002705
-
Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, et al. 2008. Dynamic regulation of nucleosome positioning in the human genome. Cell 132:887-98 (Pubitemid 351312809)
-
(2008)
Cell
, vol.132
, Issue.5
, pp. 887-898
-
-
Schones, D.E.1
Cui, K.2
Cuddapah, S.3
Roh, T.-Y.4
Barski, A.5
Wang, Z.6
Wei, G.7
Zhao, K.8
-
71
-
-
33747500567
-
A genomic code for nucleosome positioning
-
DOI 10.1038/nature04979, PII NATURE04979
-
Segal E, Fondufe-Mittendorf Y, Chen L, Thastrom A, Field Y, et al. 2006. A genomic code for nucleosome positioning. Nature 442:772-78 (Pubitemid 44258903)
-
(2006)
Nature
, vol.442
, Issue.7104
, pp. 772-778
-
-
Segal, E.1
Fondufe-Mittendorf, Y.2
Chen, L.3
Thastrom, A.4
Field, Y.5
Moore, I.K.6
Wang, J.-P.Z.7
Widom, J.8
-
72
-
-
41749091787
-
Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation
-
Shivaswamy S, Bhinge A, Zhao Y, Jones S, Hirst M, Iyer VR. 2008. Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation. PLoS Biol. 6:e65
-
(2008)
PLoS Biol
, vol.6
-
-
Shivaswamy, S.1
Bhinge, A.2
Zhao, Y.3
Jones, S.4
Hirst, M.5
Iyer, V.R.6
-
73
-
-
32444434989
-
Histone H4-K16 acetylation controls chromatin structure and protein interactions
-
DOI 10.1126/science.1124000
-
Shogren-Knaak M, Ishii H, Sun JM, Pazin MJ, Davie JR, PetersonCL. 2006. HistoneH4-K16 acetylation controls chromatin structure and protein interactions. Science 311:844-47 (Pubitemid 43228847)
-
(2006)
Science
, vol.311
, Issue.5762
, pp. 844-847
-
-
Shogren-Knaak, M.1
Ishii, H.2
Sun, J.-M.3
Pazin, M.J.4
Davie, J.R.5
Peterson, C.L.6
-
74
-
-
33750212321
-
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
-
DOI 10.1038/ng1896, PII NG1896
-
SimonisM, Klous P, Splinter E, Moshkin Y, Willemsen R, et al. 2006. Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nat. Genet. 38:1348-54 (Pubitemid 44646300)
-
(2006)
Nature Genetics
, vol.38
, Issue.11
, pp. 1348-1354
-
-
Simonis, M.1
Klous, P.2
Splinter, E.3
Moshkin, Y.4
Willemsen, R.5
De Wit, E.6
Van Steensel, B.7
De Laat, W.8
-
75
-
-
34548219406
-
A Transcription-Independent Role for TFIIB in Gene Looping
-
DOI 10.1016/j.molcel.2007.07.013, PII S1097276507004868
-
Singh BN, Hampsey M. 2007. A transcription-independent role for TFIIB in gene looping. Mol. Cell 27:806-16 (Pubitemid 47333227)
-
(2007)
Molecular Cell
, vol.27
, Issue.5
, pp. 806-816
-
-
Singh, B.N.1
Hampsey, M.2
-
76
-
-
80053539409
-
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
-
Song L, Zhang Z, Grasfeder LL, Boyle AP, Giresi PG, et al. 2011. Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity. Genome Res. 21:1757-67
-
(2011)
Genome Res
, vol.21
, pp. 1757-1767
-
-
Song, L.1
Zhang, Z.2
Grasfeder, L.L.3
Boyle, A.P.4
Giresi, P.G.5
-
77
-
-
79955760882
-
Dynamic reprogramming of chromatin accessibility during Drosophila embryo development
-
Thomas S, Li XY, Sabo PJ, SandstromR, Thurman RE, et al. 2011. Dynamic reprogramming of chromatin accessibility during Drosophila embryo development. Genome Biol. 12:R43
-
(2011)
Genome Biol
, vol.12
-
-
Thomas, S.1
Li, X.Y.2
Sabo, P.J.3
Sandstrom, R.4
Thurman, R.E.5
-
78
-
-
46449119367
-
A novel 6C assay uncovers Polycomb-mediated higher order chromatin conformations
-
DOI 10.1101/gr.073452.107
-
Tiwari VK, Cope L, McGarvey KM, Ohm JE, Baylin SB. 2008. A novel 6C assay uncovers Polycombmediated higher order chromatin conformations. Genome Res. 18:1171-79 (Pubitemid 351931168)
-
(2008)
Genome Research
, vol.18
, Issue.7
, pp. 1171-1179
-
-
Tiwari, V.K.1
Cope, L.2
McGarvey, K.M.3
Ohm, J.E.4
Baylin, S.B.5
-
79
-
-
0036923833
-
Looping and interaction between hypersensitive sites in the active β-globin locus
-
DOI 10.1016/S1097-2765(02)00781-5
-
Tolhuis B, Palstra RJ, Splinter E, Grosveld F, de Laat W. 2002. Looping and interaction between hypersensitive sites in the active β-globin locus. Mol. Cell 10:1453-65 (Pubitemid 36050885)
-
(2002)
Molecular Cell
, vol.10
, Issue.6
, pp. 1453-1465
-
-
Tolhuis, B.1
Palstra, R.-J.2
Splinter, E.3
Grosveld, F.4
De Laat, W.5
-
81
-
-
46449103738
-
A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
-
DOI 10.1101/gr.076463.108
-
Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, et al. 2008. A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. Genome Res. 18:1051-63 (Pubitemid 351931156)
-
(2008)
Genome Research
, vol.18
, Issue.7
, pp. 1051-1063
-
-
Valouev, A.1
Ichikawa, J.2
Tonthat, T.3
Stuart, J.4
Ranade, S.5
Peckham, H.6
Zeng, K.7
Malek, J.A.8
Costa, G.9
McKernan, K.10
Sidow, A.11
Fire, A.12
Johnson, S.M.13
-
82
-
-
80055081913
-
Globalmapping of cell type-specific open chromatin by FAIRE-seq reveals the regulatory role of the NFI family in adipocyte differentiation
-
Waki H, Nakamura M, Yamauchi T, WakabayashiK, Yu J, et al. 2011. Globalmapping of cell type-specific open chromatin by FAIRE-seq reveals the regulatory role of the NFI family in adipocyte differentiation. PLoS Genet. 7:e1002311
-
(2011)
PLoS Genet
, vol.7
-
-
Waki, H.1
Nakamura, M.2
Yamauchi, T.3
Wakabayashik Yu, J.4
-
83
-
-
46249112085
-
Combinatorial patterns of histone acetylations and methylations in the human genome
-
DOI 10.1038/ng.154, PII NG154
-
Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, et al. 2008.combinatorial patterns of histone acetylations and methylations in the human genome. Nat. Genet. 40:897-903 (Pubitemid 351913645)
-
(2008)
Nature Genetics
, vol.40
, Issue.7
, pp. 897-903
-
-
Wang, Z.1
Zang, C.2
Rosenfeld, J.A.3
Schones, D.E.4
Barski, A.5
Cuddapah, S.6
Cui, K.7
Roh, T.-Y.8
Peng, W.9
Zhang, M.Q.10
Zhao, K.11
-
84
-
-
0017142124
-
Chromosomal subunits in active genes have an altered conformation
-
Weintraub H, Groudine M. 1976. Chromosomal subunits in active genes have an altered conformation. Science 193:848-56
-
(1976)
Science
, vol.193
, pp. 848-856
-
-
Weintraub, H.1
Groudine, M.2
-
85
-
-
39149121436
-
Cohesin mediates transcriptional insulation by CCCTC-binding factor
-
DOI 10.1038/nature06634, PII NATURE06634
-
Wendt KS, Yoshida K, Itoh T, Bando M, Koch B, et al. 2008. Cohesin mediates transcriptional insulation by CCCTC-binding factor. Nature 451:796-801 (Pubitemid 351253176)
-
(2008)
Nature
, vol.451
, Issue.7180
, pp. 796-801
-
-
Wendt, K.S.1
Yoshida, K.2
Itoh, T.3
Bando, M.4
Koch, B.5
Schirghuber, E.6
Tsutsumi, S.7
Nagae, G.8
Ishihara, K.9
Mishiro, T.10
Yahata, K.11
Imamoto, F.12
Aburatani, H.13
Nakao, M.14
Imamoto, N.15
Maeshima, K.16
Shirahige, K.17
Peters, J.-M.18
-
86
-
-
0018458970
-
The chromatin structure of specific genes: I. Evidence for higher order domains of defined DNA sequence
-
Wu C, Bingham PM, Livak KJ, Holmgren R, Elgin SC. 1979. The chromatin structure of specific genes: I. Evidence for higher order domains of defined DNA sequence. Cell 16:797-806
-
(1979)
Cell
, vol.16
, pp. 797-806
-
-
Wu, C.1
Bingham, P.M.2
Livak, K.J.3
Holmgren, R.4
Elgin, S.C.5
-
87
-
-
0018359588
-
The chromatin structure of specific genes: II. Disruption of chromatin structure during gene activity
-
Wu C, Wong YC, Elgin SC. 1979. The chromatin structure of specific genes: II. Disruption of chromatin structure during gene activity. Cell 16:807-14 (Pubitemid 9161331)
-
(1979)
Cell
, vol.16
, Issue.4
, pp. 807-814
-
-
Wu, C.1
Wong, Y.C.2
Elgin, S.C.R.3
-
88
-
-
34548441932
-
Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome
-
Xi H, Shulha HP, Lin JM, Vales TR, Fu Y, et al. 2007. Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome. PLoS Genet. 3:e136
-
(2007)
PLoS Genet
, vol.3
-
-
Xi, H.1
Shulha, H.P.2
Lin, J.M.3
Vales, T.R.4
Fu, Y.5
-
89
-
-
22744432660
-
Molecular biology: Genome-scale identification of nucleosome positions in S. cerevisiae
-
DOI 10.1126/science.1112178
-
Yuan GC, Liu YJ, Dion MF, Slack MD, Wu LF, et al. 2005. Genome-scale identification of nucleosome positions in S. cerevisiae. Science 309:626-30 (Pubitemid 41033649)
-
(2005)
Science
, vol.309
, Issue.5734
, pp. 626-630
-
-
Yuan, G.-C.1
Liu, Y.-J.2
Dion, M.F.3
Slack, M.D.4
Wu, L.F.5
Altschuler, S.J.6
Rando, O.J.7
-
90
-
-
57449095143
-
Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq
-
Zhang Y, Shin H, Song JS, Lei Y, Liu XS. 2008. Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq. BMC Genomics 9:537
-
(2008)
BMC Genomics
, vol.9
, pp. 537
-
-
Zhang, Y.1
Shin, H.2
Song, J.S.3
Lei, Y.4
Liu, X.S.5
-
91
-
-
33750203582
-
Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions
-
DOI 10.1038/ng1891, PII NG1891
-
Zhao Z, Tavoosidana G, Sjolinder M, Gondor A, Mariano P, et al. 2006. Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra-and interchromosomal interactions. Nat. Genet. 38:1341-47 (Pubitemid 44646299)
-
(2006)
Nature Genetics
, vol.38
, Issue.11
, pp. 1341-1347
-
-
Zhao, Z.1
Tavoosidana, G.2
Sjolinder, M.3
Gondor, A.4
Mariano, P.5
Wang, S.6
Kanduri, C.7
Lezcano, M.8
Sandhu, K.S.9
Singh, U.10
Pant, V.11
Tiwari, V.12
Kurukuti, S.13
Ohlsson, R.14
-
92
-
-
78650304236
-
Charting histone modifications and the functional organization of mammalian genomes
-
Zhou VW, Goren A, Bernstein BE. 2011. Charting histone modifications and the functional organization of mammalian genomes. Nat. Rev. Genet. 12:7-18
-
(2011)
Nat. Rev. Genet
, vol.12
, pp. 7-18
-
-
Zhou, V.W.1
Goren, A.2
Bernstein, B.E.3
|