-
1
-
-
78651514974
-
Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila
-
Bantignies F, Roure V, Comet I, Leblanc B, Schuettengruber B, Bonnet J, Tixier V, Mas A, Cavalli G (2011) Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila. Cell 144: 214-226
-
(2011)
Cell
, vol.144
, pp. 214-226
-
-
Bantignies, F.1
Roure, V.2
Comet, I.3
Leblanc, B.4
Schuettengruber, B.5
Bonnet, J.6
Tixier, V.7
Mas, A.8
Cavalli, G.9
-
2
-
-
77954386433
-
Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetylation and replication timing
-
Bell O, Schwaiger M, Oakeley EJ, Lienert F, Beisel C, Stadler MB, Schübeler D (2010) Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetylation and replication timing. Nat Struct Mol Biol 17: 894-900
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 894-900
-
-
Bell, O.1
Schwaiger, M.2
Oakeley, E.J.3
Lienert, F.4
Beisel, C.5
Stadler, M.B.6
Schübeler, D.7
-
3
-
-
0033861846
-
Beta-globin gene switching and DNase I sensitivity of the endogenous beta-globin locus in mice do not require the locus control region
-
Bender MA, Bulger M, Close J, GroudineM (2000) Beta-globin gene switching and DNase I sensitivity of the endogenous beta-globin locus in mice do not require the locus control region. Mol Cell 5: 387-393
-
(2000)
Mol Cell
, vol.5
, pp. 387-393
-
-
Bender, M.A.1
Bulger, M.2
Close, J.3
Groudine, M.4
-
4
-
-
4544252919
-
Chromatin techniques for plant cells
-
Bowler C, Benvenuto G, Laflamme P, Molino D, Probst AV, Tariq M, Paszkowski J (2004) Chromatin techniques for plant cells. Plant J 39: 776-789
-
(2004)
Plant J
, vol.39
, pp. 776-789
-
-
Bowler, C.1
Benvenuto, G.2
Laflamme, P.3
Molino, D.4
Probst, A.V.5
Tariq, M.6
Paszkowski, J.7
-
5
-
-
38649099445
-
High-resolution mapping and characterization of open chromatin across the genome
-
Boyle AP, Davis S, Shulha HP, Meltzer P, Margulies EH, Weng Z, Furey TS, Crawford GE (2008) High-resolution mapping and characterization of open chromatin across the genome. Cell 132: 311-322
-
(2008)
Cell
, vol.132
, pp. 311-322
-
-
Boyle, A.P.1
Davis, S.2
Shulha, H.P.3
Meltzer, P.4
Margulies, E.H.5
Weng, Z.6
Furey, T.S.7
Crawford, G.E.8
-
6
-
-
0042091987
-
A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse beta-globin locus
-
Bulger M, Schübeler D, Bender MA, Hamilton J, Farrell CM, Hardison RC, Groudine M (2003) A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse beta-globin locus. Mol Cell Biol 23: 5234-5244
-
(2003)
Mol Cell Biol
, vol.23
, pp. 5234-5244
-
-
Bulger, M.1
Schübeler, D.2
Bender, M.A.3
Hamilton, J.4
Farrell, C.M.5
Hardison, R.C.6
Groudine, M.7
-
7
-
-
33745409293
-
DNase-chip: A high-resolution method to identify DNase I hypersensitive sites using tiled microarrays
-
Crawford GE, Davis S, Scacheri PC, Renaud G, Halawi MJ, Erdos MR, Green R, Meltzer PS, Wolfsberg TG, Collins FS (2006) DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays. Nat Methods 3: 503-509
-
(2006)
Nat Methods
, vol.3
, pp. 503-509
-
-
Crawford, G.E.1
Davis, S.2
Scacheri, P.C.3
Renaud, G.4
Halawi, M.J.5
Erdos, M.R.6
Green, R.7
Meltzer, P.S.8
Wolfsberg, T.G.9
Collins, F.S.10
-
8
-
-
10744232248
-
Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites
-
Crawford GE, Holt IE, Mullikin JC, Tai D, Blakesley R, Bouffard G, Young A, Masiello C, Green ED, Wolfsberg TG, et al (2004) Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites. Proc Natl Acad Sci USA 101: 992-997
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 992-997
-
-
Crawford, G.E.1
Holt, I.E.2
Mullikin, J.C.3
Tai, D.4
Blakesley, R.5
Bouffard, G.6
Young, A.7
Masiello, C.8
Green, E.D.9
Wolfsberg, T.G.10
-
9
-
-
20844435623
-
Highthroughput localization of functional elements by quantitative chromatin profiling
-
Dorschner MO, Hawrylycz M, Humbert R, Wallace JC, Shafer A, Kawamoto J, Mack J, Hall R, Goldy J, Sabo PJ, et al (2004) Highthroughput localization of functional elements by quantitative chromatin profiling. Nat Methods 1: 219-225
-
(2004)
Nat Methods
, vol.1
, pp. 219-225
-
-
Dorschner, M.O.1
Hawrylycz, M.2
Humbert, R.3
Wallace, J.C.4
Shafer, A.5
Kawamoto, J.6
Mack, J.7
Hall, R.8
Goldy, J.9
Sabo, P.J.10
-
10
-
-
77951947926
-
Ring1B compacts chromatin structure and represses gene expression independent of histone ubiquitination
-
Eskeland R, Leeb M, Grimes GR, Kress C, Boyle S, Sproul D, Gilbert N, Fan Y, Skoultchi AI, Wutz A, et al (2010) Ring1B compacts chromatin structure and represses gene expression independent of histone ubiquitination. Mol Cell 38: 452-464
-
(2010)
Mol Cell
, vol.38
, pp. 452-464
-
-
Eskeland, R.1
Leeb, M.2
Grimes, G.R.3
Kress, C.4
Boyle, S.5
Sproul, D.6
Gilbert, N.7
Fan, Y.8
Skoultchi, A.I.9
Wutz, A.10
-
11
-
-
0026560488
-
High-resolution analysis of c-fos chromatin accessibility using a novel DNase I-PCR assay
-
Feng J, Villeponteau B (1992) High-resolution analysis of c-fos chromatin accessibility using a novel DNase I-PCR assay. Biochim Biophys Acta 1130: 253-258
-
(1992)
Biochim Biophys Acta
, vol.1130
, pp. 253-258
-
-
Feng, J.1
Villeponteau, B.2
-
12
-
-
33749392739
-
Identifying gene regulatory elements by genomic microarray mapping of DNaseI hypersensitive sites
-
Follows GA, Dhami P, Göttgens B, Bruce AW, Campbell PJ, Dillon SC, Smith AM, Koch C, Donaldson IJ, Scott MA, et al (2006) Identifying gene regulatory elements by genomic microarray mapping of DNaseI hypersensitive sites. Genome Res 16: 1310-1319
-
(2006)
Genome Res
, vol.16
, pp. 1310-1319
-
-
Follows, G.A.1
Dhami, P.2
Göttgens, B.3
Bruce, A.W.4
Campbell, P.J.5
Dillon, S.C.6
Smith, A.M.7
Koch, C.8
Donaldson, I.J.9
Scott, M.A.10
-
13
-
-
34249744467
-
Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin
-
Kodama Y, Nagaya S, Shinmyo A, Kato K (2007) Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin. Plant Cell Physiol 48: 459-470
-
(2007)
Plant Cell Physiol
, vol.48
, pp. 459-470
-
-
Kodama, Y.1
Nagaya, S.2
Shinmyo, A.3
Kato, K.4
-
14
-
-
33847070442
-
The role of chromatin during transcription
-
Li B, Carey M, Workman JL (2007) The role of chromatin during transcription. Cell 128: 707-719
-
(2007)
Cell
, vol.128
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
15
-
-
38049162037
-
Tracking chromatin states using controlled DNase I treatment and real-time PCR
-
Martins RP, Platts AE, Krawetz SA (2007) Tracking chromatin states using controlled DNase I treatment and real-time PCR. Cell Mol Biol Lett 12: 545-555
-
(2007)
Cell Mol Biol Lett
, vol.12
, pp. 545-555
-
-
Martins, R.P.1
Platts, A.E.2
Krawetz, S.A.3
-
16
-
-
0020960251
-
Methylation status and DNase I sensitivity of immunoglobulin genes: Changes associated with rearrangement
-
Mather EL, Perry RP (1983) Methylation status and DNase I sensitivity of immunoglobulin genes: changes associated with rearrangement. Proc Natl Acad Sci USA 80: 4689-4693
-
(1983)
Proc Natl Acad Sci USA
, vol.80
, pp. 4689-4693
-
-
Mather, E.L.1
Perry, R.P.2
-
17
-
-
0035850725
-
Quantification of DNaseI-sensitivity by real-time PCR: Quantitative analysis of DNaseIhypersensitivity of the mouse beta-globin LCR
-
McArthur M, Gerum S, Stamatoyannopoulos G (2001) Quantification of DNaseI-sensitivity by real-time PCR: quantitative analysis of DNaseIhypersensitivity of the mouse beta-globin LCR. J Mol Biol 313: 27-34
-
(2001)
J Mol Biol
, vol.313
, pp. 27-34
-
-
McArthur, M.1
Gerum, S.2
Stamatoyannopoulos, G.3
-
18
-
-
78149433663
-
Analysis of active and inactive X chromosome architecture reveals the independent organization of 30 nm and large-scale chromatin structures
-
Naughton C, Sproul D, Hamilton C, Gilbert N (2010) Analysis of active and inactive X chromosome architecture reveals the independent organization of 30 nm and large-scale chromatin structures. Mol Cell 40: 397-409
-
(2010)
Mol Cell
, vol.40
, pp. 397-409
-
-
Naughton, C.1
Sproul, D.2
Hamilton, C.3
Gilbert, N.4
-
19
-
-
0032144764
-
Higher order chromatin structures in maize and Arabidopsis
-
Paul AL, Ferl RJ (1998a) Higher order chromatin structures in maize and Arabidopsis. Plant Cell 10: 1349-1359
-
(1998)
Plant Cell
, vol.10
, pp. 1349-1359
-
-
Paul, A.L.1
Ferl, R.J.2
-
20
-
-
0031917786
-
Permeabilized Arabidopsis protoplasts provide new insight into the chromatin structure of plant alcohol dehydrogenase genes
-
Paul AL, Ferl RJ (1998b) Permeabilized Arabidopsis protoplasts provide new insight into the chromatin structure of plant alcohol dehydrogenase genes. Dev Genet 22: 7-16
-
(1998)
Dev Genet
, vol.22
, pp. 7-16
-
-
Paul, A.L.1
Ferl, R.J.2
-
21
-
-
0025735111
-
Chromatin differences between active and inactive X chromosomes revealed by genomic footprinting of permeabilized cells using DNase I and ligation-mediated PCR
-
Pfeifer GP, Riggs AD (1991) Chromatin differences between active and inactive X chromosomes revealed by genomic footprinting of permeabilized cells using DNase I and ligation-mediated PCR. Genes Dev 5: 1102-1113
-
(1991)
Genes Dev
, vol.5
, pp. 1102-1113
-
-
Pfeifer, G.P.1
Riggs, A.D.2
-
22
-
-
79952266465
-
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
-
Pique-Regi R, Degner JF, Pai AA, Gaffney DJ, Gilad Y, Pritchard JK (2011) Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data. Genome Res 21: 447-455
-
(2011)
Genome Res
, vol.21
, pp. 447-455
-
-
Pique-Regi, R.1
Degner, J.F.2
Pai, A.A.3
Gaffney, D.J.4
Gilad, Y.5
Pritchard, J.K.6
-
23
-
-
75949122780
-
AGRONOMICS1: A new resource for Arabidopsis transcriptome profiling
-
Rehrauer H, Aquino C, Gruissem W, Henz SR, Hilson P, Laubinger S, Naouar N, Patrignani A, Rombauts S, Shu H, et al (2010) AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling. Plant Physiol 152: 487-499
-
(2010)
Plant Physiol
, vol.152
, pp. 487-499
-
-
Rehrauer, H.1
Aquino, C.2
Gruissem, W.3
Henz, S.R.4
Hilson, P.5
Laubinger, S.6
Naouar, N.7
Patrignani, A.8
Rombauts, S.9
Shu, H.10
-
24
-
-
1842532951
-
Genome-wide identification of DNaseI hypersensitive sites using active chromatin sequence libraries
-
Sabo PJ, Humbert R, Hawrylycz M, Wallace JC, Dorschner MO, McArthur M, Stamatoyannopoulos JA (2004) Genome-wide identification of DNaseI hypersensitive sites using active chromatin sequence libraries. Proc Natl Acad Sci USA 101: 4537-4542
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 4537-4542
-
-
Sabo, P.J.1
Humbert, R.2
Hawrylycz, M.3
Wallace, J.C.4
Dorschner, M.O.5
McArthur, M.6
Stamatoyannopoulos, J.A.7
-
25
-
-
33745416080
-
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays
-
Sabo PJ, Kuehn MS, Thurman R, Johnson BE, Johnson EM, Cao H, Yu M, Rosenzweig E, Goldy J, Haydock A, et al (2006) Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays. Nat Methods 3: 511-518
-
(2006)
Nat Methods
, vol.3
, pp. 511-518
-
-
Sabo, P.J.1
Kuehn, M.S.2
Thurman, R.3
Johnson, B.E.4
Johnson, E.M.5
Cao, H.6
Yu, M.7
Rosenzweig, E.8
Goldy, J.9
Haydock, A.10
-
27
-
-
39449088572
-
Genome-wide approaches to studying chromatin modifications
-
Schones DE, Zhao K (2008) Genome-wide approaches to studying chromatin modifications. Nat Rev Genet 9: 179-191
-
(2008)
Nat Rev Genet
, vol.9
, pp. 179-191
-
-
Schones, D.E.1
Zhao, K.2
-
28
-
-
84871796810
-
Distinct modes of DNA accessibility in plant chromatin
-
Shu H, Wildhaber T, Siretskiy A, Gruissem W, Hennig L (2012) Distinct modes of DNA accessibility in plant chromatin. Nat Commun 3: 1281
-
(2012)
Nat Commun
, vol.3
, pp. 1281
-
-
Shu, H.1
Wildhaber, T.2
Siretskiy, A.3
Gruissem, W.4
Hennig, L.5
-
29
-
-
77956276383
-
DNase-seq: A high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells
-
pdb.prot5384
-
Song L, Crawford GE (2010) DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells. Cold Spring Harb Protoc 2010: pdb. prot5384
-
(2010)
Cold Spring Harb Protoc
, vol.2010
-
-
Song, L.1
Crawford, G.E.2
-
30
-
-
0029410874
-
The Arabidopsis Adh gene exhibits diverse nucleosome arrangements within a small DNase I-sensitive domain
-
Vega-Palas MA, Ferl RJ (1995) The Arabidopsis Adh gene exhibits diverse nucleosome arrangements within a small DNase I-sensitive domain. Plant Cell 7: 1923-1932
-
(1995)
Plant Cell
, vol.7
, pp. 1923-1932
-
-
Vega-Palas, M.A.1
Ferl, R.J.2
-
31
-
-
69749092724
-
Chromatin immunoprecipitation (ChIP) on unfixed chromatin from cells and tissues to analyze histone modifications
-
pdb. prot4767
-
Wagschal A, Delaval K, Pannetier M, Arnaud P, Feil R (2007) Chromatin immunoprecipitation (ChIP) on unfixed chromatin from cells and tissues to analyze histone modifications. Cold Spring Harb Protoc 2007: pdb. prot4767
-
(2007)
Cold Spring Harb Protoc
, vol.2007
-
-
Wagschal, A.1
Delaval, K.2
Pannetier, M.3
Arnaud, P.4
Feil, R.5
-
32
-
-
0035340816
-
Chromatin structure mapping in Saccharomyces cerevisiae in vivo with DNase I
-
Wang X, Simpson RT (2001) Chromatin structure mapping in Saccharomyces cerevisiae in vivo with DNase I. Nucleic Acids Res 29: 1943-1950
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 1943-1950
-
-
Wang, X.1
Simpson, R.T.2
-
33
-
-
2342528298
-
Global survey of chromatin accessibility using DNA microarrays
-
Weil MR, Widlak P, Minna JD, Garner HR (2004) Global survey of chromatin accessibility using DNA microarrays. Genome Res 14: 1374-1381
-
(2004)
Genome Res
, vol.14
, pp. 1374-1381
-
-
Weil, M.R.1
Widlak, P.2
Minna, J.D.3
Garner, H.R.4
-
34
-
-
84865331447
-
Genome-wide identification of regulatory DNA elements and protein-binding footprints using signatures of open chromatin in Arabidopsis
-
Zhang W, Zhang T, Wu Y, Jiang J (2012) Genome-wide identification of regulatory DNA elements and protein-binding footprints using signatures of open chromatin in Arabidopsis. Plant Cell 24: 2719-2731
-
(2012)
Plant Cell
, vol.24
, pp. 2719-2731
-
-
Zhang, W.1
Zhang, T.2
Wu, Y.3
Jiang, J.4
|