Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 4, 2004, Pages 992-997

  Crawford, Gregory E ^a   Holt, Ingeborg E ^a   Mullikin, James C ^a   Tai, Denise ^a   Green, Eric D ^a   Wolfsberg, Tyra G ^a   Collins, Francis S ^a   Blakesley, Robert ^a   Bouffard, Gerard ^a   Young, Alice ^a   Masiello, Catherine ^a  

^a NATIONAL HUMAN GENOME RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CD4 ANTIGEN; DEOXYRIBONUCLEASE;

ARTICLE; BINDING SITE; CELL MATURATION; COMPUTER MODEL; CPG ISLAND; DISEASE PREDISPOSITION; DNASE HYPERSENSITIVE SITE; ENZYME ACTIVE SITE; GENE EXPRESSION REGULATION; GENE IDENTIFICATION; GENE MAPPING; GENE SEQUENCE; HUMAN; HUMAN CELL; MOLECULAR CLONING; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN STRUCTURE; RANDOMIZATION; REGULATOR GENE; SCALE UP; STANDARD; T LYMPHOCYTE ACTIVATION; TISSUE TYPES; TRANSCRIPTION REGULATION; VALIDATION PROCESS;

CD4-POSITIVE T-LYMPHOCYTES; CELLS, CULTURED; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; DEOXYRIBONUCLEASES; GENOME; HUMANS; POLYMERASE CHAIN REACTION; REGULATORY SEQUENCES, NUCLEIC ACID;

EID: 10744232248     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0307540100     Document Type: Article

References (22)

1. Collins, F. S., Green, E. D., Guttmacher, A. E. & Guyer, M. S. (2003) Nature 422, 835-847.
2. Ureta-Vidal, A., Ettwiller, L. & Birney, E. (2003) Nat. Rev. Genet. 4, 251-262.
3. Thomas, J. W., Touchman, J. W., Blakesley, R. W., Bouffard, G. G., Beckstrom-Sternberg, S. M., Margulies, E. H., Blanchette, M., Siepel, A. C., Thomas, P. J., McDowell, J. C., et al. (2003) Nature 424, 788-793.
4. Slightom, J. L., Bock, J. H., Tagle, D. A., Gumucio, D. L., Goodman, M., Stojanovic, N., Jackson, J., Miller, W. & Hardison, R. (1997) Genomics 39, 90-94.
5. Lieb, J. D., Liu, X., Botstein, D. & Brown, P. O. (2001) Nat. Genet. 28, 327-334.
6. Ren, B., Robert, F., Wyrick, J. J., Aparicio, O., Jennings, E. G., Simon, I., Zeitlinger, J., Schreiber, J., Hannett, N., Kanin, E., et al. (2000) Science, 290, 2306-2309.
7. Weinmann, A. S., Yan, P. S., Oberley, M. J., Huang, T. H. & Farnham, P. J. (2002) Genes Dev. 16, 235-244.
8. Wingender, E., Dietze, P., Karas, H. & Knuppel, R. (1996) Nucleic Acids Res. 24, 238-241.
9. Pennacchio, L. A. & Rubin, E. M. (2001) Nat. Rev. Genet. 2, 100-109.
10. Gross, D. S. & Garrard, W. T. (1988) Annu. Rev. Biochem. 57, 159-197.
11. Zaret, K. S. & Yamamoto, K. R. (1984) Cell 38, 29-38.
12. Szabo, G., Jr., Damjanovich, S., Sumegi, J. & Klein, G. (1987) Exp. Cell Res. 169, 158-168.
13. Ning, Z., Cox, A. J. & Mullikin, J. C. (2001) Genome Res. 11, 1725-1729.
14. Kent, W. J. (2002) Genome Res. 12, 656-664.
15. Waterston, R. H., Lindblad-Toh, K., Birney, E., Rogers, J., Abril, J. F., Agarwal, P., Agarwala, R., Ainscough, R., Alexandersson, M., An, P., et al. (2002) Nature 420, 520-562.
16. McArthur, M., Gerum, S. & Stamatoyannopoulos, G. (2001) J. Mol. Biol. 313, 27-34.
17. Rozen, S. & Skaletsky, H. (2000) Methods Mol. Biol. 132, 365-386.
18. Larsen, F., Gundersen, G., Lopez, R. & Prydz, H. (1992) Genomics 13, 1095-1107.
19. Jantzen, K., Fritton, H. P. & Igo-Kemenes, T. (1986) Nucleic Acids Res. 14, 6085-6099.
20. Seber, G. A. (1986) Biometrics 42, 267-292.
21. Velculescu, V. E., Zhang, L., Vogelstein, B. & Kinzler, K. W. (1995) Science 270, 484-487.
22. Brenner, S., Johnson, M., Bridgham, J., Golda, G., Lloyd, D. H., Johnson, D., Luo, S., McCurdy, S., Foy, M., Ewan, M., et al. (2000) Nat. Biotechnol. 18, 630-634.