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Volumn 5, Issue 1, 2014, Pages

A broadly implementable research course in phage discovery and genomics for first-year undergraduate students

(40)  Jordan, Tuajuanda C a   Burnett, Sandra H b   Carson, Susan c   Caruso, Steven M d   Clase, Kari e   DeJong, Randall J f   Dennehy, John J g   Denver, Dee R h   Dunbar, David i   Elgin, Sarah C R j   Findley, Ann M k   Gissendanner, Chris R k   Golebiewska, Urszula P l   Guild, Nancy m   Hartzog, Grant A n   Grillo, Wendy H o   Hollowell, Gail P o   Hughes, Lee E p   Johnson, Allison q   King, Rodney A r   more..


Author keywords

[No Author keywords available]

Indexed keywords

ACADEMIC ACHIEVEMENT; ARTICLE; BACTERIAL GENOME; BACTERIOPHAGE; BACTERIUM ISOLATE; CONTROLLED STUDY; EDUCATION PROGRAM; GENOMICS; HUMAN; LEARNING; MEDICAL EDUCATION; MEDICAL RESEARCH; MYCOBACTERIUM SMEGMATIS; MYCOBACTERIUM TUBERCULOSIS; PRIORITY JOURNAL; PROTEIN FUNCTION; UNDERGRADUATE STUDENT;

EID: 84903362641     PISSN: 21612129     EISSN: 21507511     Source Type: Journal    
DOI: 10.1128/mBio.01051-13     Document Type: Article
Times cited : (391)

References (58)
  • 2
    • 30344466137 scopus 로고    scopus 로고
    • National Academy of Sciences, National Academy of Engineering, and Institute of Medicine of the National Academies. National Academies Press, Washington, DC
    • National Academy of Sciences, National Academy of Engineering, and Institute of Medicine of the National Academies. 2007. Rising above the gathering storm: energizing and employing America for a brighter economic future. National Academies Press, Washington, DC.
    • (2007) Rising above the gathering storm: Energizing and employing America for a brighter economic future.
  • 4
    • 79959814399 scopus 로고    scopus 로고
    • American Association for the Advancement of Science. American Association for the Advancement of Science, Washington, DC
    • American Association for the Advancement of Science. 2009. Vision and change in undergraduate biology education: a call to action. American Association for the Advancement of Science, Washington, DC.
    • (2009) Vision and change in undergraduate biology education: A call to action.
  • 5
    • 4043071402 scopus 로고    scopus 로고
    • Establishing the benefits of undergraduate research for undergraduates in the sciences: First findings from a three-year study
    • Seymour E, Hunter A-B, Laursen SL, DeAntoni T. 2004. Establishing the benefits of undergraduate research for undergraduates in the sciences: first findings from a three-year study. Sci. Educ. 88:493-594. http://dx.doi.org/ 10.1002/sce.10131.
    • (2004) Sci. Educ. , vol.88 , pp. 493-594
    • Seymour, E.1    Hunter, A.-B.2    Laursen, S.L.3    DeAntoni, T.4
  • 6
    • 84880612284 scopus 로고    scopus 로고
    • Making a difference in science education: The impact of undergraduate research programs
    • Eagan MK, Hurtado S, Chang MJ, Garcia GA, Herrera FA, Garibay JC. 2013. Making a difference in science education: the impact of undergraduate research programs. Am. Educ. Res. J. 50:683-713. http://dx.doi.org/ 10.3102/0002831213482038.
    • (2013) Am. Educ. Res. J. , vol.50 , pp. 683-713
    • Eagan, M.K.1    Hurtado, S.2    Chang, M.J.3    Garcia, G.A.4    Herrera, F.A.5    Garibay, J.C.6
  • 7
    • 38349068761 scopus 로고    scopus 로고
    • Undergraduate research experiences support science career decisions and active learning
    • Lopatto D. 2007. Undergraduate research experiences support science career decisions and active learning. CBE Life Sci. Educ. 6:297-306. http:// dx.doi.org/10.1187/cbe.07-06-0039.
    • (2007) CBE Life Sci. Educ. , vol.6 , pp. 297-306
    • Lopatto, D.1
  • 8
    • 34247634991 scopus 로고    scopus 로고
    • The pipeline. Benefits of undergraduate research experiences
    • Russell SH, Hancock MP, McCullough J. 2007. The pipeline. Benefits of undergraduate research experiences. Science 316:548-549. http:// dx.doi.org/10.1126/science.1140384.
    • (2007) Science , vol.316 , pp. 548-549
    • Russell, S.H.1    Hancock, M.P.2    McCullough, J.3
  • 9
    • 84883859825 scopus 로고    scopus 로고
    • Experiences of mentors training underrepresented undergraduates in the research laboratory
    • Prunuske AJ, Wilson J, Walls M, Clarke B. 2013. Experiences of mentors training underrepresented undergraduates in the research laboratory. CBE Life Sci. Educ. 12:403-409. http://dx.doi.org/10.1187/cbe.13-02-0043.
    • (2013) CBE Life Sci. Educ. , vol.12 , pp. 403-409
    • Prunuske, A.J.1    Wilson, J.2    Walls, M.3    Clarke, B.4
  • 13
    • 84867765192 scopus 로고    scopus 로고
    • IBI series winner. Student-directed discovery of the plant microbiome and its products
    • Bascom-Slack CA, Arnold AE, Strobel SA. 2012. IBI series winner. Student-directed discovery of the plant microbiome and its products. Science 338:485-486. http://dx.doi.org/10.1126/science.1215227.
    • (2012) Science , vol.338 , pp. 485-486
    • Bascom-Slack, C.A.1    Arnold, A.E.2    Strobel, S.A.3
  • 15
    • 8544229460 scopus 로고    scopus 로고
    • Massively parallel undergraduates for bacterial genome finishing
    • Goodner B, Wheeler C, Hall P, Slater S. 2003. Massively parallel undergraduates for bacterial genome finishing. ASM News 69:584-585.
    • (2003) ASM News , vol.69 , pp. 584-585
    • Goodner, B.1    Wheeler, C.2    Hall, P.3    Slater, S.4
  • 17
    • 45349089352 scopus 로고    scopus 로고
    • Integrating research and education at research-extensive universities with research-intensive communities
    • Desai KV, Gatson SN, Stiles TW, Stewart RH, Laine GA, Quick CM. 2008. Integrating research and education at research-extensive universities with research-intensive communities. Adv. Physiol. Educ. 32: 136-141. http://dx.doi.org/10.1152/advan.90112.2008.
    • (2008) Adv. Physiol. Educ. , vol.32 , pp. 136-141
    • Desai, K.V.1    Gatson, S.N.2    Stiles, T.W.3    Stewart, R.H.4    Laine, G.A.5    Quick, C.M.6
  • 18
    • 77954042669 scopus 로고    scopus 로고
    • Entering research: A course that creates community and structure for beginning undergraduate researchers in theSTEMdisciplines
    • Balster N, Pfund C, Rediske R, Branchaw J. 2010. Entering research: a course that creates community and structure for beginning undergraduate researchers in theSTEMdisciplines. CBE Life Sci. Educ. 9:108-118. http:// dx.doi.org/10.1187/cbe.09-10-0073.
    • (2010) CBE Life Sci. Educ. , vol.9 , pp. 108-118
    • Balster, N.1    Pfund, C.2    Rediske, R.3    Branchaw, J.4
  • 22
    • 22544460255 scopus 로고    scopus 로고
    • The viriosphere, diversity, and genetic exchange within phage communities
    • Hambly E, Suttle CA. 2005. The viriosphere, diversity, and genetic exchange within phage communities. Curr. Opin. Microbiol. 8:444-450. http://dx.doi.org/10.1016/j.mib.2005.06.005.
    • (2005) Curr. Opin. Microbiol. , vol.8 , pp. 444-450
    • Hambly, E.1    Suttle, C.A.2
  • 23
    • 80053377130 scopus 로고    scopus 로고
    • Bacteriophages and their genomes
    • Hatfull GF, Hendrix RW. 2011. Bacteriophages and their genomes. Curr. Opin. Virol. 1:298-303. http://dx.doi.org/10.1016/j.coviro.2011.06.009.
    • (2011) Curr. Opin. Virol. , vol.1 , pp. 298-303
    • Hatfull, G.F.1    Hendrix, R.W.2
  • 24
    • 82455175458 scopus 로고    scopus 로고
    • Role of bacteriophage-encoded exotoxins in the evolution of bacterial pathogens
    • Casas V, Maloy S. 2011. Role of bacteriophage-encoded exotoxins in the evolution of bacterial pathogens. Future Microbiol. 6:1461-1473. http:// dx.doi.org/10.2217/fmb.11.124.
    • (2011) Future Microbiol. , vol.6 , pp. 1461-1473
    • Casas, V.1    Maloy, S.2
  • 26
    • 84857371051 scopus 로고    scopus 로고
    • Metagenomics and future perspectives in virus discovery
    • Mokili JL, Rohwer F, Dutilh BE. 2012. Metagenomics and future perspectives in virus discovery. Curr. Opin. Virol. 2:63-77. http://dx.doi.org/ 10.1016/j.coviro.2011.12.004.
    • (2012) Curr. Opin. Virol. , vol.2 , pp. 63-77
    • Mokili, J.L.1    Rohwer, F.2    Dutilh, B.E.3
  • 27
    • 79952966467 scopus 로고    scopus 로고
    • Bacteriophage research: Gateway to learning science
    • Hatfull GF. 2010. Bacteriophage research: gateway to learning science. Microbe 5:243-250.
    • (2010) Microbe , vol.5 , pp. 243-250
    • Hatfull, G.F.1
  • 28
    • 80052719011 scopus 로고    scopus 로고
    • Classroom-based science research at the introductory level: Changes in career choices and attitude
    • Harrison M, Dunbar D, Ratmansky L, Boyd K, Lopatto D. 2011. Classroom-based science research at the introductory level: changes in career choices and attitude. CBE Life Sci. Educ. 10:279-286. http:// dx.doi.org/10.1187/cbe.10-12-0151.
    • (2011) CBE Life Sci. Educ. , vol.10 , pp. 279-286
    • Harrison, M.1    Dunbar, D.2    Ratmansky, L.3    Boyd, K.4    Lopatto, D.5
  • 29
    • 71749110361 scopus 로고    scopus 로고
    • Non-STEM undergraduates become enthusiastic phage-hunters
    • Caruso SM, Sandoz J, Kelsey J. 2009. Non-STEM undergraduates become enthusiastic phage-hunters. CBE Life Sci. Educ. 8:278-282. http:// dx.doi.org/10.1187/cbe.09-07-0052.
    • (2009) CBE Life Sci. Educ. , vol.8 , pp. 278-282
    • Caruso, S.M.1    Sandoz, J.2    Kelsey, J.3
  • 30
    • 76349122227 scopus 로고    scopus 로고
    • Genomics and bioinformatics in undergraduate curricula: Contexts for hybrid laboratory/lecture courses for entering and advanced science students
    • Temple L, Cresawn SG, Monroe JD. 2010. Genomics and bioinformatics in undergraduate curricula: contexts for hybrid laboratory/lecture courses for entering and advanced science students. Biochem. Mol. Biol. Educ. 38:23-28. http://dx.doi.org/10.1002/bmb.20359.
    • (2010) Biochem. Mol. Biol. Educ. , vol.38 , pp. 23-28
    • Temple, L.1    Cresawn, S.G.2    Monroe, J.D.3
  • 40
    • 84857073808 scopus 로고    scopus 로고
    • Complete genome sequences of 138 mycobacteriophages
    • Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science Program, KwaZulu-Natal Research Institute for Tuberculosis and HIV Mycobacterial Genetics Course Students, Phage Hunters Integrating Research and Education Program
    • Hatfull GF, Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science Program, KwaZulu-Natal Research Institute for Tuberculosis and HIV Mycobacterial Genetics Course Students, Phage Hunters Integrating Research and Education Program. 2012. Complete genome sequences of 138 mycobacteriophages. J. Virol. 86:2382-2384. http://dx.doi.org/10.1128/JVI.06870-11.
    • (2012) J. Virol. , vol.86 , pp. 2382-2384
    • Hatfull, G.F.1
  • 41
    • 49149113206 scopus 로고    scopus 로고
    • Comparative genomics of the mycobacteriophages: Insights into bacteriophage evolution
    • Hatfull GF, Cresawn SG, Hendrix RW. 2008. Comparative genomics of the mycobacteriophages: insights into bacteriophage evolution. Res. Microbiol. 159:332-339. http://dx.doi.org/10.1016/j.resmic.2008.04.008.
    • (2008) Res. Microbiol. , vol.159 , pp. 332-339
    • Hatfull, G.F.1    Cresawn, S.G.2    Hendrix, R.W.3
  • 42
    • 84872783870 scopus 로고    scopus 로고
    • Integration-dependent bacteriophage immunity provides insights into the evolution of genetic switches
    • Broussard GW, Oldfield LM, Villanueva VM, Lunt BL, Shine EE, Hatfull GF. 2013. Integration-dependent bacteriophage immunity provides insights into the evolution of genetic switches. Mol. Cell 49:237-248. http://dx.doi.org/10.1016/j.molcel.2012.11.012.
    • (2013) Mol. Cell , vol.49 , pp. 237-248
    • Broussard, G.W.1    Oldfield, L.M.2    Villanueva, V.M.3    Lunt, B.L.4    Shine, E.E.5    Hatfull, G.F.6
  • 43
    • 69949178774 scopus 로고    scopus 로고
    • Mycobacteriophages BPs, angel and halo: Comparative genomics reveals a novel class of ultra-small mobile genetic elements
    • Sampson T, Broussard GW, Marinelli LJ, Jacobs-Sera D, Ray M, Ko CC, Russell D, Hendrix RW, Hatfull GF. 2009. Mycobacteriophages BPs, angel and halo: comparative genomics reveals a novel class of ultra-small mobile genetic elements. Microbiology 155:2962-2977. http://dx.doi.org/ 10.1099/mic.0.030486-0.
    • (2009) Microbiology , vol.155 , pp. 2962-2977
    • Sampson, T.1    Broussard, G.W.2    Marinelli, L.J.3    Jacobs-Sera, D.4    Ray, M.5    Ko, C.C.6    Russell, D.7    Hendrix, R.W.8    Hatfull, G.F.9
  • 44
    • 77249097494 scopus 로고    scopus 로고
    • Splicing of the mycobacteriophage Bethlehem DnaB intein: Identification of a new mechanistic class of inteins that contain an obligate block F nucleophile
    • Tori K, Dassa B, Johnson MA, Southworth MW, Brace LE, Ishino Y, Pietrokovski S, Perler FB. 2010. Splicing of the mycobacteriophage Bethlehem DnaB intein: identification of a new mechanistic class of inteins that contain an obligate block F nucleophile. J. Biol. Chem. 285:2515-2526. http://dx.doi.org/10.1074/jbc.M109.069567.
    • (2010) J. Biol. Chem. , vol.285 , pp. 2515-2526
    • Tori, K.1    Dassa, B.2    Johnson, M.A.3    Southworth, M.W.4    Brace, L.E.5    Ishino, Y.6    Pietrokovski, S.7    Perler, F.B.8
  • 45
    • 79955387027 scopus 로고    scopus 로고
    • Expanding the definition of class 3 inteins and their proposed phage origin
    • Tori K, Perler FB. 2011. Expanding the definition of class 3 inteins and their proposed phage origin. J. Bacteriol. 193:2035-2041. http:// dx.doi.org/10.1128/JB.01407-10.
    • (2011) J. Bacteriol. , vol.193 , pp. 2035-2041
    • Tori, K.1    Perler, F.B.2
  • 48
    • 33947357684 scopus 로고    scopus 로고
    • Recombineering in Mycobacterium tuberculosis
    • van Kessel JC, Hatfull GF. 2007. Recombineering in Mycobacterium tuberculosis. Nat. Methods 4:147-152. http://dx.doi.org/10.1038/ nmeth996.
    • (2007) Nat. Methods , vol.4 , pp. 147-152
    • van Kessel, J.C.1    Hatfull, G.F.2
  • 49
    • 0026323938 scopus 로고
    • Site-specific integration of mycobacteriophage L5: Integration-proficient vectors for Mycobacterium smegmatis, Mycobacterium tuberculosis, and bacille Calmette-Guerin
    • Lee MH, Pascopella L, Jacobs WR, Jr, Hatfull GF. 1991. Site-specific integration of mycobacteriophage L5: integration-proficient vectors for Mycobacterium smegmatis, Mycobacterium tuberculosis, and bacille Calmette-Guerin. Proc. Natl. Acad. Sci. U. S. A. 88:3111-3115.
    • (1991) Proc. Natl. Acad. Sci. U. S. A. , vol.88 , pp. 3111-3115
    • Lee, M.H.1    Pascopella, L.2    Jacobs Jr., W.R.3    Hatfull, G.F.4
  • 50
    • 15744392545 scopus 로고    scopus 로고
    • Survey of undergraduate research experiences (SURE): First findings
    • Lopatto D. 2004. Survey of undergraduate research experiences (SURE): first findings. Cell Biol. Educ. 3:270-277. http://dx.doi.org/10.1187/ cbe.04-07-0045.
    • (2004) Cell Biol. Educ. , vol.3 , pp. 270-277
    • Lopatto, D.1
  • 51
    • 79951789716 scopus 로고    scopus 로고
    • Toward a model of social influence that explains minority student integration into the scientific community
    • Estrada-Hollenbeck M, Woodcock A, Hernandez PR, Schultz PW. 2011. Toward a model of social influence that explains minority student integration into the scientific community. J. Educ. Psychol. 103:206-222. http://dx.doi.org/10.1037/a0020743.
    • (2011) J. Educ. Psychol. , vol.103 , pp. 206-222
    • Estrada-Hollenbeck, M.1    Woodcock, A.2    Hernandez, P.R.3    Schultz, P.W.4
  • 52
    • 33644664970 scopus 로고    scopus 로고
    • First things first: Developing academic competence in the first year of college
    • Reason RD, Terenzini PT, Domingo RJ. 2006. First things first: developing academic competence in the first year of college. Res. High. Educ. 47:149-175. http://dx.doi.org/10.1007/s11162-005-8884-4.
    • (2006) Res. High. Educ. , vol.47 , pp. 149-175
    • Reason, R.D.1    Terenzini, P.T.2    Domingo, R.J.3
  • 53
    • 33847633897 scopus 로고    scopus 로고
    • Becoming a scientist: The role of undergraduate research in students' cognitive, personal, and professional development
    • Hunter A-B, Laursen SL, Seymour E. 2007. Becoming a scientist: the role of undergraduate research in students' cognitive, personal, and professional development. Sci. Educ. 91:36-74. http://dx.doi.org/10.1002/ sce.20173.
    • (2007) Sci. Educ. , vol.91 , pp. 36-74
    • Hunter, A.-B.1    Laursen, S.L.2    Seymour, E.3
  • 57
    • 0000241874 scopus 로고
    • GeneMark: Parallel gene recognition for both DNA strands
    • Borodovsky M, McIninch J. 1993. GeneMark: parallel gene recognition for both DNA strands. Comput. Chem. 17:123-133. http://dx.doi.org/ 10.1016/0098-1354(93)80010-K.
    • (1993) Comput. Chem. , vol.17 , pp. 123-133
    • Borodovsky, M.1    McIninch, J.2
  • 58
    • 34249734822 scopus 로고    scopus 로고
    • Gepard: A rapid and sensitive tool for creating dotplots on genome scale
    • Krumsiek J, Arnold R, Rattei T. 2007. Gepard: a rapid and sensitive tool for creating dotplots on genome scale. Bioinformatics 23:1026-1028. http://dx.doi.org/10.1093/bioinformatics/btm039.
    • (2007) Bioinformatics , vol.23 , pp. 1026-1028
    • Krumsiek, J.1    Arnold, R.2    Rattei, T.3


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