메뉴 건너뛰기




Volumn 155, Issue 9, 2009, Pages 2962-2977

Mycobacteriophages BPs, angel and halo: Comparative genomics reveals a novel class of ultra-small mobile genetic elements

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENE EXPRESSION; GENE INSERTION; GENE LOCATION; GENE SEQUENCE; GENOME ANALYSIS; LYSOGENIZATION; MYCOBACTERIOPHAGE; MYCOBACTERIUM SMEGMATIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; VIRUS GENOME;

EID: 69949178774     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.030486-0     Document Type: Article
Times cited : (51)

References (41)
  • 2
    • 0036774617 scopus 로고    scopus 로고
    • Specialized transduction: An efficient method for generating marked and unmarked targeted gene disruptions in Mycobacterium tuberculosis, M. bovis BCG and M. smegmatis
    • Bardarov, S., Bardarov, S., Jr, Pavelka, M. S., Jr, Sambandamurthy, V., Larsen, M., Tufariello, J., Chan, J., Hatfull, G. & Jacobs, W. R., Jr (2002). Specialized transduction: an efficient method for generating marked and unmarked targeted gene disruptions in Mycobacterium tuberculosis, M. bovis BCG and M. smegmatis. Microbiology 148, 3007-3017.
    • (2002) Microbiology , vol.148 , pp. 3007-3017
    • Bardarov, S.1    Bardarov Jr, S.2    Pavelka Jr, M.S.3    Sambandamurthy, V.4    Larsen, M.5    Tufariello, J.6    Chan, J.7    Hatfull, G.8    Jacobs Jr, W.R.9
  • 3
    • 0030803306 scopus 로고    scopus 로고
    • Transcriptional silencing by the mycobacteriophage L5 repressor
    • Brown, K. L., Sarkis, G. J., Wadsworth, C. & Hatfull, G. F. (1997). Transcriptional silencing by the mycobacteriophage L5 repressor. EMBO J 16, 5914-5921.
    • (1997) EMBO J , vol.16 , pp. 5914-5921
    • Brown, K.L.1    Sarkis, G.J.2    Wadsworth, C.3    Hatfull, G.F.4
  • 4
    • 0034774475 scopus 로고    scopus 로고
    • Phages of dairy bacteria
    • Brussow, H. (2001). Phages of dairy bacteria. Annu Rev Microbiol 55, 283-303.
    • (2001) Annu Rev Microbiol , vol.55 , pp. 283-303
    • Brussow, H.1
  • 5
    • 0027536476 scopus 로고
    • Superinfection immunity of mycobacteriophage L5: Applications for genetic transformation of mycobacteria
    • Donnelly-Wu, M. K., Jacobs, W. R., Jr & Hatfull, G. F. (1993). Superinfection immunity of mycobacteriophage L5: applications for genetic transformation of mycobacteria. Mol Microbiol 7, 407-417.
    • (1993) Mol Microbiol , vol.7 , pp. 407-417
    • Donnelly-Wu, M.K.1    Jacobs Jr, W.R.2    Hatfull, G.F.3
  • 6
    • 0032577269 scopus 로고    scopus 로고
    • Genome structure of mycobacteriophage D29: Implications for phage evolution
    • Ford, M. E., Sarkis, G. J., Belanger, A. E., Hendrix, R. W. & Hatfull, G. F. (1998a). Genome structure of mycobacteriophage D29: implications for phage evolution. J Mol Biol 279, 143-164.
    • (1998) J Mol Biol , vol.279 , pp. 143-164
    • Ford, M.E.1    Sarkis, G.J.2    Belanger, A.E.3    Hendrix, R.W.4    Hatfull, G.F.5
  • 7
    • 0032453269 scopus 로고    scopus 로고
    • Mycobacteriophage TM4: Genome structure and gene expression
    • Ford, M. E., Stenstrom, C., Hendrix, R. W. & Hatfull, G. F. (1998b). Mycobacteriophage TM4: genome structure and gene expression. Tuber Lung Dis 79, 63-73.
    • (1998) Tuber Lung Dis , vol.79 , pp. 63-73
    • Ford, M.E.1    Stenstrom, C.2    Hendrix, R.W.3    Hatfull, G.F.4
  • 9
    • 0030608682 scopus 로고    scopus 로고
    • Mycobacteriophage L5 infection of Mycobacterium bovis BCG: Implications for phage genetics in the slow-growing mycobacteria
    • Fullner, K. J. & Hatfull, G. F. (1997). Mycobacteriophage L5 infection of Mycobacterium bovis BCG: implications for phage genetics in the slow-growing mycobacteria. Mol Microbiol 26, 755-766.
    • (1997) Mol Microbiol , vol.26 , pp. 755-766
    • Fullner, K.J.1    Hatfull, G.F.2
  • 10
    • 38949160725 scopus 로고    scopus 로고
    • In vitro reconstitution of a single-stranded transposition mechanism of IS608
    • Guynet, C., Hickman, A. B., Barabas, O., Dyda, F., Chandler, M. & Ton-Hoang, B. (2008). In vitro reconstitution of a single-stranded transposition mechanism of IS608. Mol Cell 29, 302-312.
    • (2008) Mol Cell , vol.29 , pp. 302-312
    • Guynet, C.1    Hickman, A.B.2    Barabas, O.3    Dyda, F.4    Chandler, M.5    Ton-Hoang, B.6
  • 11
    • 0002931444 scopus 로고    scopus 로고
    • Molecular genetics of mycobacteriophages
    • Edited by G. F. Hatfull & W. R. Jacobs, Jr. Washington, DC: American Society for Microbiology
    • Hatfull, G. F. (2000). Molecular genetics of mycobacteriophages. In Molecular Genetics of the Mycobacteria, pp. 37-54. Edited by G. F. Hatfull & W. R. Jacobs, Jr. Washington, DC: American Society for Microbiology.
    • (2000) Molecular Genetics of the Mycobacteria , pp. 37-54
    • Hatfull, G.F.1
  • 12
    • 33745681804 scopus 로고    scopus 로고
    • Mycobacteriophages
    • Edited by R. Calendar. New York: Oxford University Press
    • Hatfull, G. F. (2006). Mycobacteriophages. In The Bacteriophages, pp. 602-620. Edited by R. Calendar. New York: Oxford University Press.
    • (2006) The Bacteriophages , pp. 602-620
    • Hatfull, G.F.1
  • 13
    • 0027456546 scopus 로고
    • DNA sequence, structure and gene expression of mycobacteriophage L5: A phage system for mycobacterial genetics
    • Hatfull, G. F. & Sarkis, G. J. (1993). DNA sequence, structure and gene expression of mycobacteriophage L5: a phage system for mycobacterial genetics. Mol Microbiol 7, 395-405.
    • (1993) Mol Microbiol , vol.7 , pp. 395-405
    • Hatfull, G.F.1    Sarkis, G.J.2
  • 14
    • 33745698561 scopus 로고    scopus 로고
    • Hatfull, G. F., Pedulla, M. L., Jacobs-Sera, D., Cichon, P. M., Foley, A., Ford, M. E., Gonda, R. M., Houtz, J. M., Hryckowian, A. J. & other authors (2006). Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform. PLoS Genet 2, e92.
    • Hatfull, G. F., Pedulla, M. L., Jacobs-Sera, D., Cichon, P. M., Foley, A., Ford, M. E., Gonda, R. M., Houtz, J. M., Hryckowian, A. J. & other authors (2006). Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform. PLoS Genet 2, e92.
  • 15
    • 49149113206 scopus 로고    scopus 로고
    • Comparative genomics of the mycobacteriophages: Insights into bacteriophage evolution
    • Hatfull, G. F., Cresawn, S. G. & Hendrix, R. W. (2008). Comparative genomics of the mycobacteriophages: insights into bacteriophage evolution. Res Microbiol 159, 332-339.
    • (2008) Res Microbiol , vol.159 , pp. 332-339
    • Hatfull, G.F.1    Cresawn, S.G.2    Hendrix, R.W.3
  • 16
    • 0036597231 scopus 로고    scopus 로고
    • Bacteriophages: Evolution of the majority
    • Hendrix, R. W. (2002). Bacteriophages: evolution of the majority. Theor Popul Biol 61, 471-480.
    • (2002) Theor Popul Biol , vol.61 , pp. 471-480
    • Hendrix, R.W.1
  • 17
    • 0023274297 scopus 로고
    • Introduction of foreign DNA into mycobacteria using a shuttle phasmid
    • Jacobs, W. R., Jr, Tuckman, M. & Bloom, B. R. (1987). Introduction of foreign DNA into mycobacteria using a shuttle phasmid. Nature 327, 532-535.
    • (1987) Nature , vol.327 , pp. 532-535
    • Jacobs Jr, W.R.1    Tuckman, M.2    Bloom, B.R.3
  • 19
    • 0034537738 scopus 로고    scopus 로고
    • Transcriptional regulation and immunity in mycobacteriophage Bxb1
    • Jain, S. & Hatfull, G. F. (2000). Transcriptional regulation and immunity in mycobacteriophage Bxb1. Mol Microbiol 38, 971-985.
    • (2000) Mol Microbiol , vol.38 , pp. 971-985
    • Jain, S.1    Hatfull, G.F.2
  • 20
    • 0023647163 scopus 로고
    • Determination of bacteriophage lambda tail length by a protein ruler
    • Katsura, I. (1987). Determination of bacteriophage lambda tail length by a protein ruler. Nature 327, 73-75.
    • (1987) Nature , vol.327 , pp. 73-75
    • Katsura, I.1
  • 21
    • 0021712727 scopus 로고
    • Length determination in bacteriophage lambda tails
    • Katsura, I. & Hendrix, R. W. (1984). Length determination in bacteriophage lambda tails. Cell 39, 691-698.
    • (1984) Cell , vol.39 , pp. 691-698
    • Katsura, I.1    Hendrix, R.W.2
  • 22
    • 0036154792 scopus 로고    scopus 로고
    • Transposable element ISHp608 of Helicobacter pylori: Nonrandom geographic distribution, functional organization, and insertion specificity
    • Kersulyte, D., Velapatino, B., Dailide, G., Mukhopadhyay, A. K., Ito, Y., Cahuayme, L., Parkinson, A. J., Gilman, R. H. & Berg, D. E. (2002). Transposable element ISHp608 of Helicobacter pylori: nonrandom geographic distribution, functional organization, and insertion specificity. J Bacteriol 184, 992-1002.
    • (2002) J Bacteriol , vol.184 , pp. 992-1002
    • Kersulyte, D.1    Velapatino, B.2    Dailide, G.3    Mukhopadhyay, A.K.4    Ito, Y.5    Cahuayme, L.6    Parkinson, A.J.7    Gilman, R.H.8    Berg, D.E.9
  • 23
    • 0142062042 scopus 로고    scopus 로고
    • Mycobacteriophage Bxb1 integrates into the Mycobacterium smegmatis groEL1 gene
    • Kim, A. I., Ghosh, P., Aaron, M. A., Bibb, L. A., Jain, S. & Hatfull, G. F. (2003). Mycobacteriophage Bxb1 integrates into the Mycobacterium smegmatis groEL1 gene. Mol Microbiol 50, 463-473.
    • (2003) Mol Microbiol , vol.50 , pp. 463-473
    • Kim, A.I.1    Ghosh, P.2    Aaron, M.A.3    Bibb, L.A.4    Jain, S.5    Hatfull, G.F.6
  • 25
    • 0036719291 scopus 로고    scopus 로고
    • Imbroglios of viral taxonomy: Genetic exchange and failings of phenetic approaches
    • Lawrence, J. G., Hatfull, G. F. & Hendrix, R. W. (2002). Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches. J Bacteriol 184, 4891-4905.
    • (2002) J Bacteriol , vol.184 , pp. 4891-4905
    • Lawrence, J.G.1    Hatfull, G.F.2    Hendrix, R.W.3
  • 26
    • 0026323938 scopus 로고
    • Site-specific integration of mycobacteriophage L5: Integration-proficient vectors for Mycobacterium smegmatis, Mycobacterium tuberculosis, and bacille Calmette-Guérin
    • Lee, M. H., Pascopella, L., Jacobs, W. R., Jr & Hatfull, G. F. (1991). Site-specific integration of mycobacteriophage L5: integration-proficient vectors for Mycobacterium smegmatis, Mycobacterium tuberculosis, and bacille Calmette-Guérin. Proc Natl Acad Sci U S A 88, 3111-3115.
    • (1991) Proc Natl Acad Sci U S A , vol.88 , pp. 3111-3115
    • Lee, M.H.1    Pascopella, L.2    Jacobs Jr, W.R.3    Hatfull, G.F.4
  • 29
    • 38849186955 scopus 로고    scopus 로고
    • Genomic characterization of mycobacteriophage Giles: Evidence for phage acquisition of host DNA by illegitimate recombination
    • Morris, P., Marinelli, L. J., Jacobs-Sera, D., Hendrix, R. W. & Hatfull, G. F. (2008). Genomic characterization of mycobacteriophage Giles: evidence for phage acquisition of host DNA by illegitimate recombination. J Bacteriol 190, 2172-2182.
    • (2008) J Bacteriol , vol.190 , pp. 2172-2182
    • Morris, P.1    Marinelli, L.J.2    Jacobs-Sera, D.3    Hendrix, R.W.4    Hatfull, G.F.5
  • 32
    • 34547886939 scopus 로고    scopus 로고
    • Comparative genomic analysis of mycobacteriophage Tweety: Evolutionary insights and construction of compatible sitespecific integration vectors for mycobacteria
    • Pham, T. T., Jacobs-Sera, D., Pedulla, M. L., Hendrix, R. W. & Hatfull, G. F. (2007). Comparative genomic analysis of mycobacteriophage Tweety: evolutionary insights and construction of compatible sitespecific integration vectors for mycobacteria. Microbiology 153, 2711-2723.
    • (2007) Microbiology , vol.153 , pp. 2711-2723
    • Pham, T.T.1    Jacobs-Sera, D.2    Pedulla, M.L.3    Hendrix, R.W.4    Hatfull, G.F.5
  • 33
    • 33751384637 scopus 로고    scopus 로고
    • A peptidoglycan hydrolase motif within the mycobacteriophage TM4 tape measure protein promotes efficient infection of stationary phase cells
    • Piuri, M. & Hatfull, G. F. (2006). A peptidoglycan hydrolase motif within the mycobacteriophage TM4 tape measure protein promotes efficient infection of stationary phase cells. Mol Microbiol 62, 1569-1585.
    • (2006) Mol Microbiol , vol.62 , pp. 1569-1585
    • Piuri, M.1    Hatfull, G.F.2
  • 34
    • 63749110948 scopus 로고    scopus 로고
    • Piuri, M., Jacobs, W. R., Jr & Hatfull, G. F. (2009). Fluoromycobacteriophages for rapid, specific, and sensitive antibiotic susceptibility testing of Mycobacterium tuberculosis. PLoS One 4, e4870.
    • Piuri, M., Jacobs, W. R., Jr & Hatfull, G. F. (2009). Fluoromycobacteriophages for rapid, specific, and sensitive antibiotic susceptibility testing of Mycobacterium tuberculosis. PLoS One 4, e4870.
  • 36
    • 0028940695 scopus 로고
    • L5 luciferase reporter mycobacteriophages: A sensitive tool for the detection and assay of live mycobacteria
    • Sarkis, G. J., Jacobs, W. R., Jr & Hatfull, G. F. (1995). L5 luciferase reporter mycobacteriophages: a sensitive tool for the detection and assay of live mycobacteria. Mol Microbiol 15, 1055-1067.
    • (1995) Mol Microbiol , vol.15 , pp. 1055-1067
    • Sarkis, G.J.1    Jacobs Jr, W.R.2    Hatfull, G.F.3
  • 37
    • 0021144528 scopus 로고
    • Induction of bacteriophage from members of the Mycobacterium avium, Mycobacterium intracellulare, Mycobacterium scrofulaceum serocomplex
    • Timme, T. L. & Brennan, P. J. (1984). Induction of bacteriophage from members of the Mycobacterium avium, Mycobacterium intracellulare, Mycobacterium scrofulaceum serocomplex. J Gen Microbiol 130, 2059-2066.
    • (1984) J Gen Microbiol , vol.130 , pp. 2059-2066
    • Timme, T.L.1    Brennan, P.J.2
  • 38
    • 33947357684 scopus 로고    scopus 로고
    • Recombineering in Mycobacterium tuberculosis
    • van Kessel, J. C. & Hatfull, G. F. (2007). Recombineering in Mycobacterium tuberculosis. Nat Methods 4, 147-152.
    • (2007) Nat Methods , vol.4 , pp. 147-152
    • van Kessel, J.C.1    Hatfull, G.F.2
  • 39
    • 38849190026 scopus 로고    scopus 로고
    • Efficient point mutagenesis in mycobacteria using single-stranded DNA recombineering: Characterization of antimycobacterial drug targets
    • van Kessel, J. C. & Hatfull, G. F. (2008). Efficient point mutagenesis in mycobacteria using single-stranded DNA recombineering: characterization of antimycobacterial drug targets. Mol Microbiol 67, 1094-1107.
    • (2008) Mol Microbiol , vol.67 , pp. 1094-1107
    • van Kessel, J.C.1    Hatfull, G.F.2
  • 41
    • 4944237752 scopus 로고    scopus 로고
    • Conserved translational frameshift in dsDNA bacteriophage tail assembly genes
    • Xu, J., Hendrix, R. W. & Duda, R. L. (2004). Conserved translational frameshift in dsDNA bacteriophage tail assembly genes. Mol Cell 16, 11-21.
    • (2004) Mol Cell , vol.16 , pp. 11-21
    • Xu, J.1    Hendrix, R.W.2    Duda, R.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.