메뉴 건너뛰기




Volumn 111, Issue 8, 2014, Pages 1521-1531

Directed evolution of a cellodextrin transporter for improved biofuel production under anaerobic conditions in Saccharomyces cerevisiae

Author keywords

Anaerobic fermentation; Cellobiose utilization; Cellodextrin transporter; Cellulosic biofuel; Directed evolution

Indexed keywords

BIOFUELS; FERMENTATION;

EID: 84903271929     PISSN: 00063592     EISSN: 10970290     Source Type: Journal    
DOI: 10.1002/bit.25214     Document Type: Article
Times cited : (44)

References (47)
  • 1
    • 33748759588 scopus 로고    scopus 로고
    • Directed evolution of a bacterial efflux pump: Adaptation of the E. coli TolC exit duct to the Pseudomonas MexAB translocase
    • Bokma E, Koronakis E, Lobedanz S, Hughes C, Koronakis V. 2006. Directed evolution of a bacterial efflux pump: Adaptation of the E. coli TolC exit duct to the Pseudomonas MexAB translocase. FEBS Lett 580(22):5339-5343.
    • (2006) FEBS Lett , vol.580 , Issue.22 , pp. 5339-5343
    • Bokma, E.1    Koronakis, E.2    Lobedanz, S.3    Hughes, C.4    Koronakis, V.5
  • 2
    • 84857056878 scopus 로고    scopus 로고
    • Evolutionary engineering of Saccharomyces cerevisiae for improved industrially important properties
    • Cakar ZP, Turanli-Yildiz B, Alkim C, Yilmaz U. 2012. Evolutionary engineering of Saccharomyces cerevisiae for improved industrially important properties. FEMS Yeast Res 12(2):171-182.
    • (2012) FEMS Yeast Res , vol.12 , Issue.2 , pp. 171-182
    • Cakar, Z.P.1    Turanli-Yildiz, B.2    Alkim, C.3    Yilmaz, U.4
  • 3
    • 84865279828 scopus 로고    scopus 로고
    • Directed evolution: An evolving and enabling synthetic biology tool
    • Cobb RE, Si T, Zhao H. 2012. Directed evolution: An evolving and enabling synthetic biology tool. Curr Opin Chem Biol 16(3-4):285-291.
    • (2012) Curr Opin Chem Biol , vol.16 , Issue.3-4 , pp. 285-291
    • Cobb, R.E.1    Si, T.2    Zhao, H.3
  • 4
    • 84877135608 scopus 로고    scopus 로고
    • Directed evolution as a powerful synthetic biology tool
    • Cobb RE, Sun N, Zhao H. 2013. Directed evolution as a powerful synthetic biology tool. Methods 60(1):81-90.
    • (2013) Methods , vol.60 , Issue.1 , pp. 81-90
    • Cobb, R.E.1    Sun, N.2    Zhao, H.3
  • 5
    • 77957892899 scopus 로고    scopus 로고
    • Discovery and characterization of novel D-xylose-specific transporters from Neurospora crassa and Pichia stipitis
    • Du J, Li S, Zhao H. 2010. Discovery and characterization of novel D-xylose-specific transporters from Neurospora crassa and Pichia stipitis. Mol Biosyst 6(11):2150-2156.
    • (2010) Mol Biosyst , vol.6 , Issue.11 , pp. 2150-2156
    • Du, J.1    Li, S.2    Zhao, H.3
  • 6
    • 80051704380 scopus 로고    scopus 로고
    • Engineering microbial factories for synthesis of value-added products
    • Du J, Shao Z, Zhao H. 2011. Engineering microbial factories for synthesis of value-added products. J Ind Microbiol Biotechnol 38(8):873-890.
    • (2011) J Ind Microbiol Biotechnol , vol.38 , Issue.8 , pp. 873-890
    • Du, J.1    Shao, Z.2    Zhao, H.3
  • 7
    • 84865278051 scopus 로고    scopus 로고
    • Customized optimization of metabolic pathways by combinatorial transcriptional engineering
    • Du J, Yuan Y, Si T, Lian J, Zhao H. 2012. Customized optimization of metabolic pathways by combinatorial transcriptional engineering. Nucleic Acids Res 40(18):e142.
    • (2012) Nucleic Acids Res , vol.40 , Issue.18
    • Du, J.1    Yuan, Y.2    Si, T.3    Lian, J.4    Zhao, H.5
  • 8
    • 84879454382 scopus 로고    scopus 로고
    • Directed evolution of a cellobiose utilization pathway in Saccharomyces cervisiae by simultaneously engineering multiple proteins
    • Eriksen DT, Hsieh PCH, Lynn P, Zhao H. 2013a. Directed evolution of a cellobiose utilization pathway in Saccharomyces cervisiae by simultaneously engineering multiple proteins. Microb Cell Fact 12:61.
    • (2013) Microb Cell Fact , vol.12 , pp. 61
    • Eriksen, D.T.1    Hsieh, P.C.H.2    Lynn, P.3    Zhao, H.4
  • 9
    • 84894934911 scopus 로고    scopus 로고
    • Protein design for pathway engineering
    • Eriksen DT, Lian J, Zhao H. 2013b. Protein design for pathway engineering. J Struct Biol 185(2):234-242.
    • (2013) J Struct Biol , vol.185 , Issue.2 , pp. 234-242
    • Eriksen, D.T.1    Lian, J.2    Zhao, H.3
  • 10
    • 84877878130 scopus 로고    scopus 로고
    • Directed evolution of an E. coli inner membrane transporter for improved efflux of biofuel molecules
    • Foo JL, Leong SS. 2013. Directed evolution of an E. coli inner membrane transporter for improved efflux of biofuel molecules. Biotechnol Biofuels 6:81.
    • (2013) Biotechnol Biofuels , vol.6 , pp. 81
    • Foo, J.L.1    Leong, S.S.2
  • 11
    • 84857741274 scopus 로고    scopus 로고
    • An evaluation of cellulose saccharification and fermentation with an engineered Saccharomyces cerevisiae capable of cellobiose and xylose utilization
    • Fox JM, Levine SE, Blanch HW, Clark DS. 2012. An evaluation of cellulose saccharification and fermentation with an engineered Saccharomyces cerevisiae capable of cellobiose and xylose utilization. Biotechnol J 7(3):361-373.
    • (2012) Biotechnol J , vol.7 , Issue.3 , pp. 361-373
    • Fox, J.M.1    Levine, S.E.2    Blanch, H.W.3    Clark, D.S.4
  • 14
    • 34347206860 scopus 로고    scopus 로고
    • High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method
    • Gietz RD, Schiestl RH. 2007. High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method. Nat Protoc 2(1):31-34.
    • (2007) Nat Protoc , vol.2 , Issue.1 , pp. 31-34
    • Gietz, R.D.1    Schiestl, R.H.2
  • 16
    • 80052620320 scopus 로고    scopus 로고
    • Cofermentation of cellobiose and galactose by an engineered Saccharomyces cerevisiae strain
    • Ha SJ, Wei Q, Kim SR, Galazka JM, Cate JH, Jin YS. 2011b. Cofermentation of cellobiose and galactose by an engineered Saccharomyces cerevisiae strain. Appl Environ Microbiol 77(16):5822-5825.
    • (2011) Appl Environ Microbiol , vol.77 , Issue.16 , pp. 5822-5825
    • Ha, S.J.1    Wei, Q.2    Kim, S.R.3    Galazka, J.M.4    Cate, J.H.5    Jin, Y.S.6
  • 17
    • 84871442608 scopus 로고    scopus 로고
    • Energetic benefits and rapid cellobiose fermentation by Saccharomyces cerevisiae expressing cellobiose phosphorylase and mutant cellodextrin transporters
    • Ha SJ, Galazka JM, Joong Oh E, Kordic V, Kim H, Jin YS, Cate JH. 2013a. Energetic benefits and rapid cellobiose fermentation by Saccharomyces cerevisiae expressing cellobiose phosphorylase and mutant cellodextrin transporters. Metab Eng 15:134-143.
    • (2013) Metab Eng , vol.15 , pp. 134-143
    • Ha, S.J.1    Galazka, J.M.2    Joong Oh, E.3    Kordic, V.4    Kim, H.5    Jin, Y.S.6    Cate, J.H.7
  • 18
    • 84874707022 scopus 로고    scopus 로고
    • Single amino acid substitutions in HXT2.4 from Scheffersomyces stipitis lead to improved cellobiose fermentation by engineered Saccharomyces cerevisiae
    • Ha SJ, Kim H, Lin Y, Jang MU, Galazka JM, Kim TJ, Cate JH, Jin YS. 2013b. Single amino acid substitutions in HXT2.4 from Scheffersomyces stipitis lead to improved cellobiose fermentation by engineered Saccharomyces cerevisiae. Appl Environ Microbiol 79(5):1500-1507.
    • (2013) Appl Environ Microbiol , vol.79 , Issue.5 , pp. 1500-1507
    • Ha, S.J.1    Kim, H.2    Lin, Y.3    Jang, M.U.4    Galazka, J.M.5    Kim, T.J.6    Cate, J.H.7    Jin, Y.S.8
  • 21
    • 84864186953 scopus 로고    scopus 로고
    • Metabolic engineering of Saccharomyces cerevisiae: A key cell factory platform for future biorefineries
    • Hong KK, Nielsen J. 2012. Metabolic engineering of Saccharomyces cerevisiae: A key cell factory platform for future biorefineries. Cell Mol Life Sci 69(16):2671-2690.
    • (2012) Cell Mol Life Sci , vol.69 , Issue.16 , pp. 2671-2690
    • Hong, K.K.1    Nielsen, J.2
  • 22
    • 69249095799 scopus 로고    scopus 로고
    • Cell-free synthesis of functional aquaporin Z in synthetic liposomes
    • Hovijitra NT, Wuu JJ, Peaker B, Swartz JR. 2009. Cell-free synthesis of functional aquaporin Z in synthetic liposomes. Biotechnol Bioeng 104(1):40-49.
    • (2009) Biotechnol Bioeng , vol.104 , Issue.1 , pp. 40-49
    • Hovijitra, N.T.1    Wuu, J.J.2    Peaker, B.3    Swartz, J.R.4
  • 24
    • 84875490793 scopus 로고    scopus 로고
    • Continuous SSCF of AFEX pretreated corn stover for enhanced ethanol productivity using commercial enzymes and Saccharomyces cerevisiae 424A (LNH-ST)
    • Jin M, Gunawan C, Balan V, Yu X, Dale BE. 2013. Continuous SSCF of AFEX pretreated corn stover for enhanced ethanol productivity using commercial enzymes and Saccharomyces cerevisiae 424A (LNH-ST). Biotechnol Bioeng 110(5):1302-1311.
    • (2013) Biotechnol Bioeng , vol.110 , Issue.5 , pp. 1302-1311
    • Jin, M.1    Gunawan, C.2    Balan, V.3    Yu, X.4    Dale, B.E.5
  • 25
    • 74149091662 scopus 로고    scopus 로고
    • Sugar transporters in efficient utilization of mixed sugar substrates: Current knowledge and outlook
    • Jojima T, Omumasaba CA, Inui M, Yukawa H. 2010. Sugar transporters in efficient utilization of mixed sugar substrates: Current knowledge and outlook. Appl Microbiol Biotechnol 85(3):471-480.
    • (2010) Appl Microbiol Biotechnol , vol.85 , Issue.3 , pp. 471-480
    • Jojima, T.1    Omumasaba, C.A.2    Inui, M.3    Yukawa, H.4
  • 26
    • 77958544345 scopus 로고    scopus 로고
    • Preparative scale production of functional mouse aquaporin 4 using different cell-free expression modes
    • Kai L, Kaldenhoff R, Lian J, Zhu X, Dotsch V, Bernhard F, Cen P, Xu Z. 2010. Preparative scale production of functional mouse aquaporin 4 using different cell-free expression modes. PLoS ONE 5(9):e12972.
    • (2010) PLoS ONE , vol.5 , Issue.9
    • Kai, L.1    Kaldenhoff, R.2    Lian, J.3    Zhu, X.4    Dotsch, V.5    Bernhard, F.6    Cen, P.7    Xu, Z.8
  • 27
    • 84862812426 scopus 로고    scopus 로고
    • Simultaneous co-fermentation of mixed sugars: A promising strategy for producing cellulosic ethanol
    • Kim SR, Ha SJ, Wei N, Oh EJ, Jin YS. 2012. Simultaneous co-fermentation of mixed sugars: A promising strategy for producing cellulosic ethanol. Trends Biotechnol 30(5):274-282.
    • (2012) Trends Biotechnol , vol.30 , Issue.5 , pp. 274-282
    • Kim, S.R.1    Ha, S.J.2    Wei, N.3    Oh, E.J.4    Jin, Y.S.5
  • 28
    • 84874499132 scopus 로고    scopus 로고
    • Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae
    • Kim SR, Skerker JM, Kang W, Lesmana A, Wei N, Arkin AP, Jin YS. 2013. Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae. PLoS ONE 8(2):e57048.
    • (2013) PLoS ONE , vol.8 , Issue.2
    • Kim, S.R.1    Skerker, J.M.2    Kang, W.3    Lesmana, A.4    Wei, N.5    Arkin, A.P.6    Jin, Y.S.7
  • 29
    • 77957928329 scopus 로고    scopus 로고
    • Overcoming glucose repression in mixed sugar fermentation by co-expressing a cellobiose transporter and a beta-glucosidase in Saccharomyces cerevisiae
    • Li S, Du J, Sun J, Galazka JM, Glass NL, Cate JH, Yang X, Zhao H. 2010. Overcoming glucose repression in mixed sugar fermentation by co-expressing a cellobiose transporter and a beta-glucosidase in Saccharomyces cerevisiae. Mol Biosyst 6(11):2129-2132.
    • (2010) Mol Biosyst , vol.6 , Issue.11 , pp. 2129-2132
    • Li, S.1    Du, J.2    Sun, J.3    Galazka, J.M.4    Glass, N.L.5    Cate, J.H.6    Yang, X.7    Zhao, H.8
  • 30
    • 60549098614 scopus 로고    scopus 로고
    • Improving aquaporin Z expression in Escherichia coli by fusion partners and subsequent condition optimization
    • Lian J, Ding S, Cai J, Zhang D, Xu Z, Wang X. 2009a. Improving aquaporin Z expression in Escherichia coli by fusion partners and subsequent condition optimization. Appl Microbiol Biotechnol 82(3):463-470.
    • (2009) Appl Microbiol Biotechnol , vol.82 , Issue.3 , pp. 463-470
    • Lian, J.1    Ding, S.2    Cai, J.3    Zhang, D.4    Xu, Z.5    Wang, X.6
  • 32
    • 55549108089 scopus 로고    scopus 로고
    • Engineered enzymes for chemical production
    • Luetz S, Giver L, Lalonde J. 2008. Engineered enzymes for chemical production. Biotechnol Bioeng 101(4):647-653.
    • (2008) Biotechnol Bioeng , vol.101 , Issue.4 , pp. 647-653
    • Luetz, S.1    Giver, L.2    Lalonde, J.3
  • 33
    • 38449096799 scopus 로고    scopus 로고
    • Further improvement of phosphite dehydrogenase thermostability by saturation mutagenesis
    • McLachlan MJ, Johannes TW, Zhao H. 2008. Further improvement of phosphite dehydrogenase thermostability by saturation mutagenesis. Biotechnol Bioeng 99(2):268-274.
    • (2008) Biotechnol Bioeng , vol.99 , Issue.2 , pp. 268-274
    • McLachlan, M.J.1    Johannes, T.W.2    Zhao, H.3
  • 34
    • 84872390751 scopus 로고    scopus 로고
    • Enhanced xylitol production through simultaneous co-utilization of cellobiose and xylose by engineered Saccharomyces cerevisiae
    • Oh EJ, Ha SJ, Rin Kim S, Lee WH, Galazka JM, Cate JH, Jin YS. 2013. Enhanced xylitol production through simultaneous co-utilization of cellobiose and xylose by engineered Saccharomyces cerevisiae. Metab Eng 15:226-234.
    • (2013) Metab Eng , vol.15 , pp. 226-234
    • Oh, E.J.1    Ha, S.J.2    Rin Kim, S.3    Lee, W.H.4    Galazka, J.M.5    Cate, J.H.6    Jin, Y.S.7
  • 35
    • 74049128960 scopus 로고    scopus 로고
    • An evolved xylose transporter from Zymomonas mobilis enhances sugar transport in Escherichia coli
    • Ren C, Chen T, Zhang J, Liang L, Lin Z. 2009. An evolved xylose transporter from Zymomonas mobilis enhances sugar transport in Escherichia coli. Microb Cell Fact 8:66.
    • (2009) Microb Cell Fact , vol.8 , pp. 66
    • Ren, C.1    Chen, T.2    Zhang, J.3    Liang, L.4    Lin, Z.5
  • 36
    • 1242292971 scopus 로고    scopus 로고
    • Engineering of carbon catabolite repression in recombinant xylose fermenting Saccharomyces cerevisiae
    • Roca C, Haack MB, Olsson L. 2004. Engineering of carbon catabolite repression in recombinant xylose fermenting Saccharomyces cerevisiae. Appl Microbiol Biotechnol 63(5):578-583.
    • (2004) Appl Microbiol Biotechnol , vol.63 , Issue.5 , pp. 578-583
    • Roca, C.1    Haack, M.B.2    Olsson, L.3
  • 37
    • 33744492921 scopus 로고    scopus 로고
    • Recent advances in biocatalysis by directed enzyme evolution
    • Rubin-Pitel SB, Zhao H. 2006. Recent advances in biocatalysis by directed enzyme evolution. Comb Chem High Throughput Screen 9(4):247-257.
    • (2006) Comb Chem High Throughput Screen , vol.9 , Issue.4 , pp. 247-257
    • Rubin-Pitel, S.B.1    Zhao, H.2
  • 38
    • 59649108349 scopus 로고    scopus 로고
    • DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways
    • Shao Z, Zhao H, Zhao H. 2009. DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways. Nucleic Acids Res 37(2):e16.
    • (2009) Nucleic Acids Res , vol.37 , Issue.2
    • Shao, Z.1    Zhao, H.2    Zhao, H.3
  • 39
    • 10244225308 scopus 로고    scopus 로고
    • TMRPres2D: High quality visual representation of transmembrane protein models
    • Spyropoulos IC, Liakopoulos TD, Bagos PG, Hamodrakas SJ. 2004. TMRPres2D: High quality visual representation of transmembrane protein models. Bioinformatics 20(17):3258-3260.
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 3258-3260
    • Spyropoulos, I.C.1    Liakopoulos, T.D.2    Bagos, P.G.3    Hamodrakas, S.J.4
  • 40
    • 84862817382 scopus 로고    scopus 로고
    • Cloning and characterization of a panel of constitutive promoters for applications in pathway engineering in Saccharomyces cerevisiae
    • Sun J, Shao Z, Zhao H, Nair N, Wen F, Xu JH. 2012. Cloning and characterization of a panel of constitutive promoters for applications in pathway engineering in Saccharomyces cerevisiae. Biotechnol Bioeng 109(8):2082-2092.
    • (2012) Biotechnol Bioeng , vol.109 , Issue.8 , pp. 2082-2092
    • Sun, J.1    Shao, Z.2    Zhao, H.3    Nair, N.4    Wen, F.5    Xu, J.H.6
  • 41
    • 0034786532 scopus 로고    scopus 로고
    • The HMMTOP transmembrane topology prediction server
    • Tusnady GE, Simon I. 2001. The HMMTOP transmembrane topology prediction server. Bioinformatics 17(9):849-850.
    • (2001) Bioinformatics , vol.17 , Issue.9 , pp. 849-850
    • Tusnady, G.E.1    Simon, I.2
  • 42
    • 0025318231 scopus 로고
    • Physiology of Saccharomyces cerevisiae in anaerobic glucose-limited chemostat cultures
    • Verduyn C, Postma E, Scheffers WA, van Dijken JP. 1990. Physiology of Saccharomyces cerevisiae in anaerobic glucose-limited chemostat cultures. J Gen Microbiol 136(3):395-403.
    • (1990) J Gen Microbiol , vol.136 , Issue.3 , pp. 395-403
    • Verduyn, C.1    Postma, E.2    Scheffers, W.A.3    van Dijken, J.P.4
  • 43
    • 70349765870 scopus 로고    scopus 로고
    • Protein engineering in designing tailored enzymes and microorganisms for biofuels production
    • Wen F, Nair NU, Zhao H. 2009. Protein engineering in designing tailored enzymes and microorganisms for biofuels production. Curr Opin Biotechnol 20(4):412-419.
    • (2009) Curr Opin Biotechnol , vol.20 , Issue.4 , pp. 412-419
    • Wen, F.1    Nair, N.U.2    Zhao, H.3
  • 45
    • 84862800120 scopus 로고    scopus 로고
    • A molecular transporter engineering approach to improving xylose catabolism in Saccharomyces cerevisiae
    • Young EM, Comer AD, Huang H, Alper HS. 2012. A molecular transporter engineering approach to improving xylose catabolism in Saccharomyces cerevisiae. Metab Eng 14(4):401-411.
    • (2012) Metab Eng , vol.14 , Issue.4 , pp. 401-411
    • Young, E.M.1    Comer, A.D.2    Huang, H.3    Alper, H.S.4
  • 46
    • 84884535181 scopus 로고    scopus 로고
    • Directed evolution of a highly efficient cellobiose utilizing pathway in an industrial Saccharomyces cerevisiae strain
    • Yuan Y, Zhao H. 2013. Directed evolution of a highly efficient cellobiose utilizing pathway in an industrial Saccharomyces cerevisiae strain. Biotechnol Bioeng 110(11):2874-2881.
    • (2013) Biotechnol Bioeng , vol.110 , Issue.11 , pp. 2874-2881
    • Yuan, Y.1    Zhao, H.2
  • 47
    • 1642273858 scopus 로고    scopus 로고
    • Kinetics and relative importance of phosphorolytic and hydrolytic cleavage of cellodextrins and cellobiose in cell extracts of Clostridium thermocellum
    • Zhang YH, Lynd LR. 2004. Kinetics and relative importance of phosphorolytic and hydrolytic cleavage of cellodextrins and cellobiose in cell extracts of Clostridium thermocellum. Appl Environ Microbiol 70(3):1563-1569.
    • (2004) Appl Environ Microbiol , vol.70 , Issue.3 , pp. 1563-1569
    • Zhang, Y.H.1    Lynd, L.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.