-
1
-
-
0030839865
-
Oxidative decay of DNA
-
DOI 10.1074/jbc.272.32.19633
-
Beckman, K. B., and Ames, B. N. (1997) Oxidative decay of DNA. J. Biol. Chem. 272, 19633-19636 (Pubitemid 27340047)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.32
, pp. 19633-19636
-
-
Beckman, K.B.1
Ames, B.N.2
-
2
-
-
0031889780
-
DNA oxidation matters: The HPLC-electrochemical detection assay of 8-oxo-deoxyguanosine and 8-oxo-guanine
-
Helbock, H. J., Beckman, K. B., Shigenaga, M. K., Walter, P. B., Woodall, A. A., Yeo, H. C., and Ames, B. N. (1998) DNA oxidation matters: the HPLC-electrochemical detection assay of 8-oxo-deoxyguanosine and 8-oxo-guanine. Proc. Natl. Acad. Sci. U.S.A. 95, 288-293
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 288-293
-
-
Helbock, H.J.1
Beckman, K.B.2
Shigenaga, M.K.3
Walter, P.B.4
Woodall, A.A.5
Yeo, H.C.6
Ames, B.N.7
-
3
-
-
16544371202
-
Mutagenicities of 8-hydroxyguanine and 2-hydroxyadenine produced by reactive oxygen species
-
Kamiya, H. (2004) Mutagenicities of 8-hydroxyguanine and 2-hydroxyadenine produced by reactive oxygen species. Biol. Pharm. Bull. 27, 475-479
-
(2004)
Biol. Pharm. Bull.
, vol.27
, pp. 475-479
-
-
Kamiya, H.1
-
4
-
-
0025891928
-
Immunoaffinity isolation of urinary 8-hydroxy-2′-deoxyguanosine and 8-hydroxyguanine and quantitation of 8-hydroxy-2-deoxyguanosine in DNA by polyclonal antibodies
-
Degan, P., Shigenaga, M. K., Park, E. M., Alperin, P. E., and Ames, B. N. (1991) Immunoaffinity isolation of urinary 8-hydroxy-2′-deoxyguanosine and 8-hydroxyguanine and quantitation of 8-hydroxy-2-deoxyguanosine in DNA by polyclonal antibodies. Carcinogenesis 12, 865-871
-
(1991)
Carcinogenesis
, vol.12
, pp. 865-871
-
-
Degan, P.1
Shigenaga, M.K.2
Park, E.M.3
Alperin, P.E.4
Ames, B.N.5
-
5
-
-
0025938226
-
Major alterations in the nucleotide structure of DNA in cancer of the female breast
-
Malins, D. C., and Haimanot, R. (1991) Major alterations in the nucleotide structure of DNA in cancer of the female breast. Cancer Res. 51, 5430-5432
-
(1991)
Cancer Res.
, vol.51
, pp. 5430-5432
-
-
Malins, D.C.1
Haimanot, R.2
-
6
-
-
0025373259
-
Oxidative damage to DNA during aging: 8-hydroxy-2′-deoxyguanosine in rat organ DNA and urine
-
Fraga, C. G., Shigenaga, M. K., Park, J. W., Degan, P., and Ames, B. N. (1990) Oxidative damage to DNA during aging: 8-hydroxy-2′-deoxyguanosine in rat organ DNA and urine. Proc. Natl. Acad. Sci. U.S.A. 87, 4533-4537
-
(1990)
Proc. Natl. Acad. Sci. U.S.A.
, vol.87
, pp. 4533-4537
-
-
Fraga, C.G.1
Shigenaga, M.K.2
Park, J.W.3
Degan, P.4
Ames, B.N.5
-
7
-
-
0028339240
-
Increased formation of oxidative DNA damage, 8-hydroxydeoxyguanosine, in human livers with chronic hepatitis
-
Shimoda, R., Nagashima, M., Sakamoto, M., Yamaguchi, N., Hirohashi, S., Yokota, J., and Kasai, H. (1994) Increased formation of oxidative DNA damage, 8-hydroxydeoxyguanosine, in human livers with chronic hepatitis. Cancer Res. 54, 3171-3172 (Pubitemid 24208923)
-
(1994)
Cancer Research
, vol.54
, Issue.12
, pp. 3171-3172
-
-
Shimoda, R.1
Nagashima, M.2
Sakamoto, M.3
Yamaguchi, N.4
Hirohashi, S.5
Yokota, J.6
Kasai, H.7
-
8
-
-
0026323320
-
Ascorbic acid protects against endogenous oxidative DNA damage in human sperm
-
Fraga, C. G., Motchnik, P. A., Shigenaga, M. K., Helbock, H. J., Jacob, R. A., and Ames, B. N. (1991) Ascorbic acid protects against endogenous oxidative DNA damage in human sperm. Proc. Natl. Acad. Sci. U.S.A. 88, 11003-11006 (Pubitemid 21915967)
-
(1991)
Proceedings of the National Academy of Sciences of the United States of America
, vol.88
, Issue.24
, pp. 11003-11006
-
-
Fraga, C.G.1
Motchnik, P.A.2
Shigenaga, M.K.3
Helbock, H.J.4
Jacob, R.A.5
Ames, B.N.6
-
9
-
-
78549267771
-
DNA polymerase structure-based insight on the mutagenic properties of 8-oxoguanine
-
Beard, W. A., Batra, V. K., and Wilson, S. H. (2010) DNA polymerase structure-based insight on the mutagenic properties of 8-oxoguanine. Mutat. Res. 703, 18-23
-
(2010)
Mutat. Res.
, vol.703
, pp. 18-23
-
-
Beard, W.A.1
Batra, V.K.2
Wilson, S.H.3
-
10
-
-
77952571717
-
Oxygen as a friend and enemy: How to combat the mutational potential of 8-oxo-guanine
-
van Loon, B., Markkanen, E., and Hübscher, U. (2010) Oxygen as a friend and enemy: how to combat the mutational potential of 8-oxo-guanine. DNA Repair 9, 604-616
-
(2010)
DNA Repair
, vol.9
, pp. 604-616
-
-
Van Loon, B.1
Markkanen, E.2
Hübscher, U.3
-
12
-
-
0030220956
-
Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily
-
DOI 10.1016/S0960-9822(02)00641-3
-
Nash, H. M., Bruner, S. D., Schärer, O. D., Kawate, T., Addona, T. A., Spooner, E., Lane, W. S., and Verdine, G. L. (1996) Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base excision DNA-repair protein superfamily. Curr. Biol. 6, 968-980 (Pubitemid 26350717)
-
(1996)
Current Biology
, vol.6
, Issue.8
, pp. 968-980
-
-
Nash, H.M.1
Bruner, S.D.2
Scharer, O.D.3
Kawate, T.4
Addona, T.A.5
Spooner, E.6
Lane, W.S.7
Verdine, G.L.8
-
13
-
-
0029896229
-
Cloning and expression in Escherichia coli of the OGG1 gene of Saccharomyces cerevisiae, which codes for a DNA glycosylase that excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine
-
van der Kemp, P. A., Thomas, D., Barbey, R., de Oliveira, R., and Boiteux, S. (1996) Cloning and expression in Escherichia coli of the OGG1 gene of Saccharomyces cerevisiae, which codes for a DNA glycosylase that excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N- methylformamidopyrimidine. Proc. Natl. Acad. Sci. U.S.A. 93, 5197-5202
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 5197-5202
-
-
Van Der Kemp, P.A.1
Thomas, D.2
Barbey, R.3
De Oliveira, R.4
Boiteux, S.5
-
14
-
-
0033197818
-
MSH2 and MSH6 are required for removal of adenine misincorporated opposite 8-oxo-guanine in S. cerevisiae
-
DOI 10.1016/S1097-2765(00)80346-9
-
Ni, T. T., Marsischky, G. T., and Kolodner, R. D. (1999) MSH2 and MSH6 are required for removal of adenine misincorporated opposite 8-oxo-guanine in S. cerevisiae. Mol. Cell 4, 439-444 (Pubitemid 29499797)
-
(1999)
Molecular Cell
, vol.4
, Issue.3
, pp. 439-444
-
-
Ni, T.T.1
Marsischky, G.T.2
Kolodner, R.D.3
-
15
-
-
0004228157
-
-
American Society for Microbiology, Washington, D. C.
-
Friedberg, E. C., Walker, G. C., Siede, W., Wood, R. D., Shultz, R. A., and Ellenberger, T. (eds) (2006) DNA Repair and Mutagenesis, 2nd Ed, American Society for Microbiology, Washington, D. C.
-
(2006)
DNA Repair and Mutagenesis, 2nd Ed
-
-
Friedberg, E.C.1
Walker, G.C.2
Siede, W.3
Wood, R.D.4
Shultz, R.A.5
Ellenberger, T.6
-
16
-
-
19344374975
-
Error-prone DNA repair and translesion DNA synthesis II: The inducible SOS hypothesis
-
Bridges, B. A. (2005) Error-prone DNA repair and translesion DNA synthesis II: the inducible SOS hypothesis. DNA Repair 4, 725-726
-
(2005)
DNA Repair
, vol.4
, pp. 725-726
-
-
Bridges, B.A.1
-
17
-
-
43449133259
-
PCNA Ubiquitination and REV1 Define Temporally Distinct Mechanisms for Controlling Translesion Synthesis in the Avian Cell Line DT40
-
DOI 10.1016/j.molcel.2008.03.024, PII S1097276508003249
-
Edmunds, C. E., Simpson, L. J., and Sale, J. E. (2008) PCNA ubiquitination and REV1 define temporally distinct mechanisms for controlling translesion synthesis in the avian cell line DT40. Mol. Cell 30, 519-529 (Pubitemid 351672376)
-
(2008)
Molecular Cell
, vol.30
, Issue.4
, pp. 519-529
-
-
Edmunds, C.E.1
Simpson, L.J.2
Sale, J.E.3
-
18
-
-
43049160831
-
Rad6-Rad18 Mediates a Eukaryotic SOS Response by Ubiquitinating the 9-1-1 Checkpoint Clamp
-
DOI 10.1016/j.cell.2008.02.050, PII S009286740800442X
-
Fu, Y., Zhu, Y., Zhang, K., Yeung, M., Durocher, D., and Xiao, W. (2008) Rad6-Rad18 mediates a eukaryotic SOS response by ubiquitinating the 9-1-1 checkpoint clamp. Cell 133, 601-611 (Pubitemid 351636298)
-
(2008)
Cell
, vol.133
, Issue.4
, pp. 601-611
-
-
Fu, Y.1
Zhu, Y.2
Zhang, K.3
Yeung, M.4
Durocher, D.5
Xiao, W.6
-
19
-
-
34248399044
-
New functions for Y family polymerases
-
Lehmann, A. R. (2006) New functions for Y family polymerases. Mol. Cell 24, 493-495
-
(2006)
Mol. Cell
, vol.24
, pp. 493-495
-
-
Lehmann, A.R.1
-
20
-
-
84857411787
-
Y-family DNA polymerases and their role in tolerance of cellular DNA damage
-
Sale, J. E., Lehmann, A. R., and Woodgate, R. (2012) Y-family DNA polymerases and their role in tolerance of cellular DNA damage. Nat. Rev. Cell Mol. Biol. 13, 141-152
-
(2012)
Nat. Rev. Cell Mol. Biol.
, vol.13
, pp. 141-152
-
-
Sale, J.E.1
Lehmann, A.R.2
Woodgate, R.3
-
21
-
-
21244506437
-
Eukaryotic translesion synthesis DNA polymerases: Specificity of structure and function
-
DOI 10.1146/annurev.biochem.74.082803.133250
-
Prakash, S., Johnson, R. E., and Prakash, L. (2005) Eukaryotic translesion synthesis DNA polymerases: specificity of structure and function. Annu. Rev. Biochem. 74, 317-353 (Pubitemid 40995510)
-
(2005)
Annual Review of Biochemistry
, vol.74
, pp. 317-353
-
-
Prakash, S.1
Johnson, R.E.2
Prakash, L.3
-
22
-
-
33644634327
-
Interactions of carcinogen-bound DNA with individual DNA polymerases
-
Guengerich, F. P. (2006) Interactions of carcinogen-bound DNA with individual DNA polymerases. Chem. Rev. 106, 420-452
-
(2006)
Chem. Rev.
, vol.106
, pp. 420-452
-
-
Guengerich, F.P.1
-
23
-
-
77956547549
-
-
Geacintov, N. E., and Broyde, S., eds Wiley-VCH, Weinheim, Germany
-
Eoff, R. L., Egli, M., and Guengerich, F. P. (2010) in The Chemical Biology of DNA Damage (Geacintov, N. E., and Broyde, S., eds) pp. 299-330, Wiley-VCH, Weinheim, Germany
-
(2010)
The Chemical Biology of DNA Damage
, pp. 299-330
-
-
Eoff, R.L.1
Egli, M.2
Guengerich, F.P.3
-
25
-
-
0033581011
-
DNA polymerases: Structural diversity and common mechanisms
-
Steitz, T. A. (1999) DNA polymerases: structural diversity and common mechanisms. J. Biol. Chem. 274, 17395-17398
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 17395-17398
-
-
Steitz, T.A.1
-
26
-
-
0035890599
-
Sulfolobus solfataricus P2 DNA polymerase IV (Dp04): An archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic polη
-
Boudsocq, F., Iwai, S., Hanaoka, F., and Woodgate, R. (2001) Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): an archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic polη. Nucleic Acids Res. 29, 4607-4616 (Pubitemid 33095021)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.22
, pp. 4607-4616
-
-
Boudsocq, F.1
Iwai, S.2
Hanaoka, F.3
Woodgate, R.4
-
27
-
-
0035812849
-
Crystal structure of a Y-family DNA polymerase in action: A mechanism for error-prone and lesion-bypass replication
-
DOI 10.1016/S0092-8674(01)00515-3
-
Ling, H., Boudsocq, F., Woodgate, R., and Yang, W. (2001) Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication. Cell 107, 91-102 (Pubitemid 32972040)
-
(2001)
Cell
, vol.107
, Issue.1
, pp. 91-102
-
-
Ling, H.1
Boudsocq, F.2
Woodgate, R.3
Yang, W.4
-
28
-
-
0041864009
-
Replication of a cis-syn thymine dimer at atomic resolution
-
DOI 10.1038/nature01919
-
Ling, H., Boudsocq, F., Plosky, B. S., Woodgate, R., and Yang, W. (2003) Replication of a cys-syn thymine dimer at atomic resolution. Nature 424, 1083-1087 (Pubitemid 37064312)
-
(2003)
Nature
, vol.424
, Issue.6952
, pp. 1083-1087
-
-
Ling, H.1
Boudsocq, F.2
Plosky, B.S.3
Woodgate, R.4
Yang, W.5
-
29
-
-
3543028588
-
Investigating the role of the little finger domain of Y-family DNA polymerases in low fidelity synthesis and translesion replication
-
DOI 10.1074/jbc.M405249200
-
Boudsocq, F., Kokoska, R. J., Plosky, B. S., Vaisman, A., Ling, H., Kunkel, T. A., Yang, W., and Woodgate, R. (2004) Investigating the role of the little finger domain of Y-family DNA polymerases in low fidelity synthesis and translesion replication. J. Biol. Chem. 279, 32932-32940 (Pubitemid 39014753)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.31
, pp. 32932-32940
-
-
Boudsocq, F.1
Kokoska, R.J.2
Plosky, B.B.3
Vaisman, A.4
Ling, H.5
Kunkel, T.A.6
Yang, W.7
Woodgate, R.8
-
30
-
-
33644866040
-
Efficient and high fidelity incorporation of dCTP opposite 7,8-dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA polymerase Dpo4
-
DOI 10.1074/jbc.M510889200
-
Zang, H., Irimia, A., Choi, J.-Y., Angel, K. C., Loukachevitch, L. V., Egli, M., and Guengerich, F. P. (2006) Efficient and high fidelity incorporation of dCTP opposite 7,8-dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA polymerase Dpo4. J. Biol. Chem. 281, 2358-2372 (Pubitemid 43845827)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.4
, pp. 2358-2372
-
-
Zang, H.1
Irimia, A.2
Choi, J.-Y.3
Angel, K.C.4
Loukachevitch, L.V.5
Egli, M.6
Guengerich, F.P.7
-
31
-
-
34547136494
-
Hydrogen bonding of 7,8-dihydro-8-oxodeoxyguanosine with a charged residue in the little finger domain determines miscoding events in sulfolobus solfataricus DNA polymerase Dpo4
-
DOI 10.1074/jbc.M702290200
-
Eoff, R. L., Irimia, A., Angel, K. C., Egli, M., and Guengerich, F. P. (2007) Hydrogen bonding of 7,8-dihydro-8-oxodeoxyguanosine with a charged residue in the little finger domain determines miscoding events in Sulfolobus solfataricus DNA polymerase Dpo4. J. Biol. Chem. 282, 19831-19843 (Pubitemid 47100053)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.27
, pp. 19831-19843
-
-
Eoff, R.L.1
Irimia, A.2
Angel, K.C.3
Egli, M.4
Guengerich, F.P.5
-
32
-
-
69249101227
-
Structural and functional elucidation of the mechanism promoting error-prone synthesis by human DNA polymerase κ opposite the 7,8-dihydro-8-oxo-2′-deoxyguanosine adduct
-
Irimia, A., Eoff, R. L., Guengerich, F. P., and Egli, M. (2009) Structural and functional elucidation of the mechanism promoting error-prone synthesis by human DNA polymerase κ opposite the 7,8-dihydro-8-oxo- 2′-deoxyguanosine adduct. J. Biol. Chem. 284, 22467-22480
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 22467-22480
-
-
Irimia, A.1
Eoff, R.L.2
Guengerich, F.P.3
Egli, M.4
-
33
-
-
0025981359
-
Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG
-
Shibutani, S., Takeshita, M., and Grollman, A. P. (1991) Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8- oxodG. Nature 349, 431-434 (Pubitemid 21926107)
-
(1991)
Nature
, vol.349
, Issue.6308
, pp. 431-434
-
-
Shibutani, S.1
Takeshita, M.2
Grollman, A.P.3
-
34
-
-
13844296708
-
Bumps in the road: How replicative DNA polymerases see DNA damage
-
DOI 10.1016/j.sbi.2005.01.014
-
Hogg, M., Wallace, S. S., and Doublié, S. (2005) Bumps in the road: how replicative DNA polymerases see DNA damage. Curr. Opin. Struct. Biol. 15, 86-93 (Pubitemid 40249514)
-
(2005)
Current Opinion in Structural Biology
, vol.15
, Issue.1 SPEC. ISS.
, pp. 86-93
-
-
Hogg, M.1
Wallace, S.S.2
Doublie, S.3
-
35
-
-
0037196072
-
Efficiency, specificity and DNA polymerase-dependence of translesion replication across the oxidative DNA lesion 8-oxoguanine in human cells
-
PII S0027510702002543
-
Avkin, S., and Livneh, Z. (2002) Efficiency, specificity and DNA polymerase-dependence of translesion replication across the oxidative DNA lesion 8-oxoguanine in human cells. Mutat. Res. 510, 81-90 (Pubitemid 35379888)
-
(2002)
Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis
, vol.510
, Issue.1-2
, pp. 81-90
-
-
Avkin, S.1
Livneh, Z.2
-
36
-
-
42649142912
-
Translesion synthesis of 7,8-dihydro-8-oxo-2-deoxyguanosine by DNA polymerase η in vivo
-
Lee, D. H., and Pfeifer, G. P. (2008) Translesion synthesis of 7,8-dihydro-8-oxo-2-deoxyguanosine by DNA polymerase η in vivo. Mutat. Res. 641, 19-26
-
(2008)
Mutat. Res.
, vol.641
, pp. 19-26
-
-
Lee, D.H.1
Pfeifer, G.P.2
-
37
-
-
84884599178
-
In vivo bypass of 8-oxoG
-
Rodriguez, G. P., Song, J. B., and Crouse, G. F. (2013) In vivo bypass of 8-oxoG. PLoS Genet. 9, e1003682
-
(2013)
PLoS Genet.
, vol.9
-
-
Rodriguez, G.P.1
Song, J.B.2
Crouse, G.F.3
-
38
-
-
0034425754
-
Efficient and accurate replication in the presence of 7,8-dihydro-8-oxoguanine by DNA polymerase η
-
DOI 10.1038/78169
-
Haracska, L., Yu, S. L., Johnson, R. E., Prakash, L., and Prakash, S. (2000) Efficient and accurate replication in the presence of 7,8-dihydro-8-oxoguanine by DNA polymerase η. Nat. Genet. 25, 458-461 (Pubitemid 32983443)
-
(2000)
Nature Genetics
, vol.25
, Issue.4
, pp. 458-461
-
-
Haracska, L.1
Yu, S.-L.2
Johnson, R.E.3
Prakash, L.4
Prakash, S.5
-
39
-
-
0034677798
-
Specificity of DNA lesion bypass by the yeast DNA polymerase η
-
DOI 10.1074/jbc.275.11.8233
-
Yuan, F., Zhang, Y., Rajpal, D. K., Wu, X., Guo, D., Wang, M., Taylor, J.-S., and Wang, Z. (2000) Specificity of DNA lesion bypass by the yeast polymerase η. J. Biol. Chem. 275, 8233-8239 (Pubitemid 30159741)
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.11
, pp. 8233-8239
-
-
Yuan, F.1
Zhang, Y.2
Rajpal, D.K.3
Wu, X.4
Guo, D.5
Wang, M.6
Taylor, J.-S.7
Wang, Z.8
-
40
-
-
14844364365
-
Mechanism of efficient and accurate nucleotide incorporation opposite 7,8-Dihydro-8-oxoguanine by Saccharomyces cerevisiae DNA polymerase η
-
DOI 10.1128/MCB.25.6.2169-2176.2005
-
Carlson, K. D., and Washington, M. T. (2005) Mechanism of efficient and accurate nucleotide incorporation opposite 7,8-dihydro-8-oxoguanine by Saccharomyces cerevisiae DNA polymerase η. Mol. Cell Biol. 25, 2169-2176 (Pubitemid 40354617)
-
(2005)
Molecular and Cellular Biology
, vol.25
, Issue.6
, pp. 2169-2176
-
-
Carlson, K.D.1
Washington, M.T.2
-
41
-
-
78149443814
-
Structural basis for error-free replication of oxidatively damaged DNA by yeast DNA polymerase η
-
Silverstein, T. D., Jain, R., Johnson, R. E., Prakash, L., Prakash, S., and Aggarwal, A. K. (2010) Structural basis for error-free replication of oxidatively damaged DNA by yeast DNA polymerase η. Structure 18, 1463-1470
-
(2010)
Structure
, vol.18
, pp. 1463-1470
-
-
Silverstein, T.D.1
Jain, R.2
Johnson, R.E.3
Prakash, L.4
Prakash, S.5
Aggarwal, A.K.6
-
42
-
-
34249870372
-
8-oxo-guanine bypass by human DNA polymerases in the presence of auxiliary proteins
-
DOI 10.1038/nature05843, PII NATURE05843
-
Maga, G., Villani, G., Crespan, E., Wimmer, U., Ferrari, E., Bertocci, B., and Hübscher, U. (2007) 8-Oxo-guanine bypass by human DNA polymerases in the presence of auxiliary proteins. Nature 447, 606-608 (Pubitemid 46868042)
-
(2007)
Nature
, vol.447
, Issue.7144
, pp. 606-608
-
-
Maga, G.1
Villani, G.2
Crespan, E.3
Wimmer, U.4
Ferrari, E.5
Bertocci, B.6
Hubscher, U.7
-
43
-
-
84870880802
-
A switch between polymerases δ and λ promotes error-free bypass of 8-oxo-G lesions
-
Markkanen, E., Castrec, B., Villani, G., and Hübscher, U. (2012) A switch between polymerases δ and λ promotes error-free bypass of 8-oxo-G lesions. Proc. Natl. Acad. Sci. U.S.A. 109, 20401-20406
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 20401-20406
-
-
Markkanen, E.1
Castrec, B.2
Villani, G.3
Hübscher, U.4
-
44
-
-
42949177129
-
Nucleotide incorporation against 7,8-dihydro-8-oxoguanine is influenced by neighboring base sequences in TLS DNA polymerase reaction
-
Yung, C., Suzuki, T., Okugawa, Y., Kawakami, A., Loakes, D., Negishi, K., and Negishi, T. (2007) Nucleotide incorporation against 7,8-dihydro-8- oxoguanine is influenced by neighboring base sequences in TLS DNA polymerase reaction. Nucleic Acids Symp. Ser. 51, 49-50
-
(2007)
Nucleic Acids Symp. Ser.
, vol.51
, pp. 49-50
-
-
Yung, C.1
Suzuki, T.2
Okugawa, Y.3
Kawakami, A.4
Loakes, D.5
Negishi, K.6
Negishi, T.7
-
45
-
-
0034327408
-
Error-free and error-prone lesion bypass by human DNA polymerase κ in vitro
-
Zhang, Y., Yuan, F., Wu, X., Wang, M., Rechkoblit, O., Taylor, J.-S., Geacintov, N. E., and Wang, Z. (2000) Error-free and error-prone lesion bypass by human DNA polymerase κ in vitro. Nucleic Acids Res. 28, 4138-4146
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4138-4146
-
-
Zhang, Y.1
Yuan, F.2
Wu, X.3
Wang, M.4
Rechkoblit, O.5
Taylor, J.-S.6
Geacintov, N.E.7
Wang, Z.8
-
46
-
-
0344442405
-
8-Hydroxyguanine in a mutational hotspot of the c-Ha-ras gene causes misreplication, 'action-at-a-distance' mutagenesis and inhibition of replication
-
DOI 10.1093/nar/gkg829
-
Jaloszyński, P., Masutani, C., Hanaoka, F., Perez, A. B., and Nishimura, S. (2003) 8-Hydroxyguanine in a mutational hotspot of the c-Ha-ras gene causes misreplication, 'action-at-a-distance' mutagenesis and inhibition of replication. Nucleic Acids Res. 31, 6085-6095 (Pubitemid 37442336)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.21
, pp. 6085-6095
-
-
Jaloszynski, P.1
Masutani, C.2
Hanaoka, F.3
Blanco, P.A.4
Nishimura, S.5
-
47
-
-
66249093490
-
The efficiency and fidelity of 8-oxo-guanine bypass by DNA polymerases δ and η
-
McCulloch, S. D., Kokoska, R. J., Garg, P., Burgers, P. M., and Kunkel, T. A. (2009) The efficiency and fidelity of 8-oxo-guanine bypass by DNA polymerases δ and η. Nucleic Acids Res. 37, 2830-2840
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 2830-2840
-
-
McCulloch, S.D.1
Kokoska, R.J.2
Garg, P.3
Burgers, P.M.4
Kunkel, T.A.5
-
48
-
-
0033548231
-
Efficient bypass of a thymine-thymine dimer by yeast DNA polymerase Polη
-
Johnson, R. E., Prakash, S., and Prakash, L. (1999) Efficient bypass of a thymine-thymine dimer by yeast DNA polymerase Polη. Science 283, 1001-1004
-
(1999)
Science
, vol.283
, pp. 1001-1004
-
-
Johnson, R.E.1
Prakash, S.2
Prakash, L.3
-
49
-
-
0033578040
-
The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase η
-
DOI 10.1038/21447
-
Masutani, C., Kusumoto, R., Yamada, A., Dohmae, N., Yokoi, M., Yuasa, M., Araki, M., Iwai, S., Takio, K., and Hanaoka, F. (1999) The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase η. Nature 399, 700-704 (Pubitemid 29289067)
-
(1999)
Nature
, vol.399
, Issue.6737
, pp. 700-704
-
-
Masutani, C.1
Kusumoto, R.2
Yamada, A.3
Dohmae, N.4
Yokol, M.5
Yuasa, M.6
Araki, M.7
Iwai, S.8
Takio, K.9
Hanaoka, F.10
-
50
-
-
0033538470
-
hRAD30 mutations in the variant form of xeroderma pigmentosum
-
DOI 10.1126/science.285.5425.263
-
Johnson, R. E., Kondratick, C. M., Prakash, S., and Prakash, L. (1999) hRAD30 mutations in the variant form of xeroderma pigmentosum. Science 285, 263-265 (Pubitemid 29330001)
-
(1999)
Science
, vol.285
, Issue.5425
, pp. 263-265
-
-
Johnson, R.E.1
Kondratick, C.M.2
Prakash, S.3
Prakash, L.4
-
51
-
-
0034712656
-
Efficient translesion replication past oxaliplatin and cisplatin GpG adducts by human DNA polymerase η
-
DOI 10.1021/bi000130k
-
Vaisman, A., Masutani, C., Hanaoka, F., and Chaney, S. G. (2000) Efficient translesion replication past oxaliplatin and cisplatin GpG adducts by human DNA polymerase η. Biochemistry 39, 4575-4580 (Pubitemid 30225320)
-
(2000)
Biochemistry
, vol.39
, Issue.16
, pp. 4575-4580
-
-
Vaisman, A.1
Masutani, C.2
Hanaoka, F.3
Chaney, S.G.4
-
52
-
-
77953924511
-
Structure and mechanism of human DNA polymerase η
-
Biertümpfel, C., Zhao, Y., Kondo, Y., Ramón-Maiques, S., Gregory, M., Lee, J. Y., Masutani, C., Lehmann, A. R., Hanaoka, F., and Yang, W. (2010) Structure and mechanism of human DNA polymerase η. Nature 465, 1044-1048
-
(2010)
Nature
, vol.465
, pp. 1044-1048
-
-
Biertümpfel, C.1
Zhao, Y.2
Kondo, Y.3
Ramón-Maiques, S.4
Gregory, M.5
Lee, J.Y.6
Masutani, C.7
Lehmann, A.R.8
Hanaoka, F.9
Yang, W.10
-
53
-
-
84863676249
-
Watching DNA polymerase η make a phosphodiester bond
-
Nakamura, T., Zhao, Y., Yamagata, Y., Hua, Y. J., and Yang, W. (2012) Watching DNA polymerase η make a phosphodiester bond. Nature 487, 196-201
-
(2012)
Nature
, vol.487
, pp. 196-201
-
-
Nakamura, T.1
Zhao, Y.2
Yamagata, Y.3
Hua, Y.J.4
Yang, W.5
-
54
-
-
36048931023
-
Bypass of DNA lesions generated during anticancer treatment with cisplatin by DNA polymerase η
-
DOI 10.1126/science.1148242
-
Alt, A., Lammens, K., Chiocchini, C., Lammens, A., Pieck, J. C., Kuch, D., Hopfner, K. P., and Carell, T. (2007) Bypass of DNA lesions generated during anticancer treatment with cisplatin by DNA polymerase η. Science 318, 967-970 (Pubitemid 350098991)
-
(2007)
Science
, vol.318
, Issue.5852
, pp. 967-970
-
-
Alt, A.1
Lammens, K.2
Chiocchini, C.3
Lammens, A.4
Pieck, J.C.5
Kuch, D.6
Hopfner, K.-P.7
Carell, T.8
-
55
-
-
84860792390
-
Structural basis of human polymerase η-mediated chemoresistance to cisplatin
-
Zhao, Y., Biertümpfel, C., Gregory, M. T., Hua, Y. J., Hanaoka, F., and Yang, W. (2012) Structural basis of human polymerase η-mediated chemoresistance to cisplatin. Proc. Natl. Acad. Sci. U.S.A. 109, 7269-7274
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 7269-7274
-
-
Zhao, Y.1
Biertümpfel, C.2
Gregory, M.T.3
Hua, Y.J.4
Hanaoka, F.5
Yang, W.6
-
56
-
-
0029780554
-
-+
-
DOI 10.1021/bi960485x
-
Lowe, L. G., and Guengerich, F. P. (1996) Steady-state and pre-steady-state kinetic analysis of dNTP insertion opposite 8-oxo-7,8-dihydroguanine by Escherichia coli polymerases I exo- and II exo-. Biochemistry 35, 9840-9849 (Pubitemid 26302999)
-
(1996)
Biochemistry
, vol.35
, Issue.30
, pp. 9840-9849
-
-
Lowe, L.G.1
Guengerich, F.P.2
-
57
-
-
23844454020
-
2- ethenoguanine
-
DOI 10.1074/jbc.M504756200
-
Zang, H., Goodenough, A. K., Choi, J. Y., Irimia, A., Loukachevitch, L. V., Kozekov, I. D., Angel, K. C., Rizzo, C. J., Egli, M., and Guengerich, F. P. (2005) DNA adduct bypass polymerization by Sulfolobus solfataricus DNA polymerase Dpo4. Analysis and crystal structures of multiple basepair substitution and frameshift products with the adduct 1, N2-ethenoguanine. J. Biol. Chem. 280, 29750-29764 (Pubitemid 41177052)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.33
, pp. 29750-29764
-
-
Zang, H.1
Goodenough, A.K.2
Choi, J.-Y.3
Irimia, A.4
Loukachevitch, L.V.5
Kozekov, I.D.6
Angel, K.C.7
Rizzo, C.J.8
Egli, M.9
Guengerich, F.P.10
-
58
-
-
67449103244
-
5-methyl-formamidopyrimidine lesion of deoxyguanosine by DNA polymerases and an improved procedure for sequence analysis of in vitro bypass products by mass spectrometry
-
5-methyl-formamidopyrimidine lesion of deoxyguanosine by DNA polymerases and an improved procedure for sequence analysis of in vitro bypass products by mass spectrometry. Chem. Res. Toxicol. 22, 1086-1095
-
(2009)
Chem. Res. Toxicol.
, vol.22
, pp. 1086-1095
-
-
Christov, P.P.1
Angel, K.C.2
Guengerich, F.P.3
Rizzo, C.J.4
-
59
-
-
84941616318
-
-
Egli, M., Herwijn, P., Matsuda, A., and Sanghvi, Y., eds John Wiley and Sons, Inc., Hoboken, NJ
-
Chowdhury, G., and Guengerich, F. P. (2011) in Current Protocols Nucleic Acid Chemistry (Egli, M., Herwijn, P., Matsuda, A., and Sanghvi, Y., eds) pp. 7.16.1-7.16.11, John Wiley and Sons, Inc., Hoboken, NJ
-
(2011)
Current Protocols Nucleic Acid Chemistry
-
-
Chowdhury, G.1
Guengerich, F.P.2
-
60
-
-
0026206788
-
Sparse matrix sampling. A screening method for crystallization of proteins
-
DOI 10.1107/S0021889891004430
-
Jancarik, J., and Kim, S. H., (1991) Sparse matrix sampling: a screening method for crystallization of proteins. J. Appl. Crystallogr. 24, 409-411 (Pubitemid 21679358)
-
(1991)
Journal of Applied Crystallography
, vol.24
, Issue.PART 4
, pp. 409-411
-
-
Jancarik, J.1
Kim S.-Hou2
-
61
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
DOI 10.1016/S0076-6879(97)76066-X
-
Otwinowski, Z., and Minor, W. (1997) Processing of x-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326 (Pubitemid 27085611)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
63
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project No. 4
-
Collaborative Computational Project No. 4 (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 50, 760-763
-
(1994)
Acta Crystallogr. D Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
64
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams, P. D., Afonine, P. V., Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., Hung, L. W., Kapral, G. J., Grosse-Kunstleve, R. W., McCoy, A. J., Moriarty, N. W., Oeffner, R., Read, R. J., Richardson, D. C., Richardson, J. S., Terwilliger, T. C., and Zwart, P. H. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 66, 213-221
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
66
-
-
4444221565
-
UCSF Chimera-a visualization system for exploratory research and analysis
-
Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., and Ferrin, T. E. (2004) UCSF Chimera-a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605-1612
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
67
-
-
23944449018
-
Adduct size limits efficient and error-free bypass across bulky N2-guanine DNA lesions by human DNA polymerase η
-
Choi, J. Y., and Guengerich, F. P. (2005) Adduct size limits efficient and error-free bypass across bulky N2-guanine DNA lesions by human DNA polymerase η. J. Mol. Biol. 352, 72-90
-
(2005)
J. Mol. Biol.
, vol.352
, pp. 72-90
-
-
Choi, J.Y.1
Guengerich, F.P.2
-
68
-
-
84878226044
-
Biochemical analysis of active site mutations of human polymerase η
-
Suarez, S. C., Beardslee, R. A., Toffton, S. M., and McCulloch, S. D. (2013) Biochemical analysis of active site mutations of human polymerase η. Mutat. Res. 745, 46-54
-
(2013)
Mutat. Res.
, vol.745
, pp. 46-54
-
-
Suarez, S.C.1
Beardslee, R.A.2
Toffton, S.M.3
McCulloch, S.D.4
-
69
-
-
0346996697
-
Recognition of 5′-YpG-3′ Sequences by Coupled Stacking/ Hydrogen Bonding Interactions with Amino Acid Residues
-
DOI 10.1016/j.jmb.2003.10.071
-
Lamoureux, J. S., Maynes, J. T., and Glover, J. N. (2004) Recognition of 5′-YpG-3′ sequences by coupled stacking/hydrogen bonding interactions with amino acid residues. J. Mol. Biol. 335, 399-408 (Pubitemid 37532643)
-
(2004)
Journal of Molecular Biology
, vol.335
, Issue.2
, pp. 399-408
-
-
Lamoureux, J.S.1
Maynes, J.T.2
Glover, J.N.M.3
-
70
-
-
84877867629
-
Mechanism of somatic hypermutation at the WA motif by human DNA polymerase η
-
Zhao, Y., Gregory, M. T., Biertümpfel, C., Hua, Y.-J., Hanaoka, F., and Yang, W. (2013) Mechanism of somatic hypermutation at the WA motif by human DNA polymerase η. Proc. Natl. Acad. Sci. U.S.A. 110, 8146-8151
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 8146-8151
-
-
Zhao, Y.1
Gregory, M.T.2
Biertümpfel, C.3
Hua, Y.-J.4
Hanaoka, F.5
Yang, W.6
-
71
-
-
66849126006
-
Structure of human DNA polymerase κ inserting dATP opposite an 8-oxoG DNA lesion
-
Vasquez-Del Carpio, R., Silverstein, T. D., Lone, S., Swan, M. K., Choudhury, J. R., Johnson, R. E., Prakash, S., Prakash, L., and Aggarwal, A. K. (2009) Structure of human DNA polymerase κ inserting dATP opposite an 8-oxoG DNA lesion. PLoS ONE 4, e5766
-
(2009)
PLoS ONE
, vol.4
-
-
Vasquez-Del Carpio, R.1
Silverstein, T.D.2
Lone, S.3
Swan, M.K.4
Choudhury, J.R.5
Johnson, R.E.6
Prakash, S.7
Prakash, L.8
Aggarwal, A.K.9
|