메뉴 건너뛰기




Volumn 703, Issue 1, 2010, Pages 18-23

DNA polymerase structure-based insight on the mutagenic properties of 8-oxoguanine

Author keywords

Base excision repair; DNA polymerase; Endogenous DNA damage; Fidelity; Structure

Indexed keywords

8 HYDROXYGUANINE; ADENINE; CYTOSINE; DNA DIRECTED DNA POLYMERASE BETA;

EID: 78549267771     PISSN: 13835718     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mrgentox.2010.07.013     Document Type: Review
Times cited : (82)

References (38)
  • 1
    • 0025902273 scopus 로고
    • Endogenous mutagens and the causes of aging and cancer
    • Ames B.N., Gold L.S. Endogenous mutagens and the causes of aging and cancer. Mutat. Res. 1991, 250:3-16.
    • (1991) Mutat. Res. , vol.250 , pp. 3-16
    • Ames, B.N.1    Gold, L.S.2
  • 2
    • 0035231287 scopus 로고    scopus 로고
    • Repair of 8-oxoguanine and Ogg1-incised apurinic sites in a CHO cell line
    • Boiteux S., Le Page F. Repair of 8-oxoguanine and Ogg1-incised apurinic sites in a CHO cell line. Prog. Nucleic Acid Res. Mol. Biol. 2001, 68:95-105.
    • (2001) Prog. Nucleic Acid Res. Mol. Biol. , vol.68 , pp. 95-105
    • Boiteux, S.1    Le Page, F.2
  • 3
    • 0027324378 scopus 로고
    • Mutagenesis by 8-oxoguanine: an enemy within
    • Grollman A.P., Moriya M. Mutagenesis by 8-oxoguanine: an enemy within. Trends Genet. 1993, 9:246-249.
    • (1993) Trends Genet. , vol.9 , pp. 246-249
    • Grollman, A.P.1    Moriya, M.2
  • 4
    • 0026701365 scopus 로고
    • The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8-dihydro-8-oxoguanine)
    • Michaels M.L., Miller J.H. The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8-dihydro-8-oxoguanine). J. Bacteriol. 1992, 174:6321-6325.
    • (1992) J. Bacteriol. , vol.174 , pp. 6321-6325
    • Michaels, M.L.1    Miller, J.H.2
  • 5
    • 0035237612 scopus 로고    scopus 로고
    • Regulation of intracellular localization of human MTH1, OGG1, and MYH proteins for repair of oxidative DNA damage
    • Nakabeppu Y. Regulation of intracellular localization of human MTH1, OGG1, and MYH proteins for repair of oxidative DNA damage. Prog. Nucleic Acid Res. Mol. Biol. 2001, 68:75-94.
    • (2001) Prog. Nucleic Acid Res. Mol. Biol. , vol.68 , pp. 75-94
    • Nakabeppu, Y.1
  • 6
    • 0035237613 scopus 로고    scopus 로고
    • Mammalian Ogg1/Mmh gene plays a major role in repair of the 8-hydroxyguanine lesion in DNA
    • Nishimura S. Mammalian Ogg1/Mmh gene plays a major role in repair of the 8-hydroxyguanine lesion in DNA. Prog. Nucleic Acid Res. Mol. Biol. 2001, 68:107-123.
    • (2001) Prog. Nucleic Acid Res. Mol. Biol. , vol.68 , pp. 107-123
    • Nishimura, S.1
  • 7
    • 33744467715 scopus 로고    scopus 로고
    • 8-Hydroxyguanine: from its discovery in 1983 to the present status
    • Nishimura S. 8-Hydroxyguanine: from its discovery in 1983 to the present status. Proc. Jpn. Acad., Ser. B 2006, 82:127-141.
    • (2006) Proc. Jpn. Acad., Ser. B , vol.82 , pp. 127-141
    • Nishimura, S.1
  • 9
    • 0037115963 scopus 로고    scopus 로고
    • Oxidative nucleotide damage: consequences and prevention
    • Sekiguchi M., Tsuzuki T. Oxidative nucleotide damage: consequences and prevention. Oncogene 2002, 58:8895-8904.
    • (2002) Oncogene , vol.58 , pp. 8895-8904
    • Sekiguchi, M.1    Tsuzuki, T.2
  • 11
    • 77954384819 scopus 로고    scopus 로고
    • Mutagenic conformation of 8-oxo-7,8-dihydro-2'-dGTP in the confines of a DNA polymerase active site
    • Batra V.K., Beard W.A., Hou E.W., Pedersen L.C., Prasad R., Wilson S.H. Mutagenic conformation of 8-oxo-7,8-dihydro-2'-dGTP in the confines of a DNA polymerase active site. Nat. Struct. Mol. Biol. 2010, 17:889-890.
    • (2010) Nat. Struct. Mol. Biol. , vol.17 , pp. 889-890
    • Batra, V.K.1    Beard, W.A.2    Hou, E.W.3    Pedersen, L.C.4    Prasad, R.5    Wilson, S.H.6
  • 12
    • 0023434210 scopus 로고
    • An ab initio molecular orbital study on the characteristics of 8-hydroxyguanine
    • Aida M., Nishimura S. An ab initio molecular orbital study on the characteristics of 8-hydroxyguanine. Mut. Res. 1987, 192:83-89.
    • (1987) Mut. Res. , vol.192 , pp. 83-89
    • Aida, M.1    Nishimura, S.2
  • 13
    • 0024841281 scopus 로고
    • Structural Conformational analyses of 8-hydroxy-2'-deoxyguanosine
    • Culp S.J., Cho B.P., Kadlubar F.F., Evans F.E., Structural conformational analyses of 8-hydroxy-2'-deoxyguanosine. Chem. Res. Toxicol. 1989, 2:416-422.
    • (1989) Chem. Res. Toxicol. , vol.2 , pp. 416-422
    • Culp, S.J.1    Cho, B.P.2    Kadlubar, F.F.3    Evans, F.E.4
  • 14
    • 0017772412 scopus 로고
    • Carbon-13 magnetic resonance spectra of 8-substituted purine nucleosides: characteristic shifts for the syn conformation
    • Uesugi S., Ikehara M. Carbon-13 magnetic resonance spectra of 8-substituted purine nucleosides: characteristic shifts for the syn conformation. J. Am. Chem. Soc. 1977, 99:3250-3253.
    • (1977) J. Am. Chem. Soc. , vol.99 , pp. 3250-3253
    • Uesugi, S.1    Ikehara, M.2
  • 17
    • 0025891866 scopus 로고
    • NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo-7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG(syn)•dA(anti) alignment at lesion site
    • Kouchakdjian M., Bodepudi V., Shibutani S., Eisenberg M., Johnson F., Grollman A.P., Patel D.J. NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo-7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG(syn)•dA(anti) alignment at lesion site. Biochemistry 1991, 30:1403-1412.
    • (1991) Biochemistry , vol.30 , pp. 1403-1412
    • Kouchakdjian, M.1    Bodepudi, V.2    Shibutani, S.3    Eisenberg, M.4    Johnson, F.5    Grollman, A.P.6    Patel, D.J.7
  • 19
    • 0037227566 scopus 로고    scopus 로고
    • Structure of DNA polymerase β with the mutagenic DNA lesion 8-oxodeoxyguanine reveals structural insights into its coding potential
    • Krahn J.M., Beard W.A., Miller H., Grollman A.P., Wilson S.H. Structure of DNA polymerase β with the mutagenic DNA lesion 8-oxodeoxyguanine reveals structural insights into its coding potential. Structure (Camb) 2003, 11:121-127.
    • (2003) Structure (Camb) , vol.11 , pp. 121-127
    • Krahn, J.M.1    Beard, W.A.2    Miller, H.3    Grollman, A.P.4    Wilson, S.H.5
  • 20
    • 33947170923 scopus 로고    scopus 로고
    • Single-turnover kinetic analysis of the mutagenic potential of 8-oxo-7,8-dihydro-2'-deoxyguanosine during gap-filling synthesis catalyzed by human DNA polymerases λ and β
    • Brown J.A., Duym W.W., Fowler J.D., Suo Z. Single-turnover kinetic analysis of the mutagenic potential of 8-oxo-7,8-dihydro-2'-deoxyguanosine during gap-filling synthesis catalyzed by human DNA polymerases λ and β. J. Mol. Biol. 2007, 367:1258-1269.
    • (2007) J. Mol. Biol. , vol.367 , pp. 1258-1269
    • Brown, J.A.1    Duym, W.W.2    Fowler, J.D.3    Suo, Z.4
  • 21
    • 0037041029 scopus 로고    scopus 로고
    • Loss of DNA polymerase β stacking interactions with templating purines, but not pyrimidines, alters catalytic efficiency and fidelity
    • Beard W.A., Shock D.D., Yang X.-P., DeLauder S.F., Wilson S.H. Loss of DNA polymerase β stacking interactions with templating purines, but not pyrimidines, alters catalytic efficiency and fidelity. J. Biol. Chem. 2002, 277:8235-8242.
    • (2002) J. Biol. Chem. , vol.277 , pp. 8235-8242
    • Beard, W.A.1    Shock, D.D.2    Yang, X.-P.3    DeLauder, S.F.4    Wilson, S.H.5
  • 23
    • 33644634986 scopus 로고    scopus 로고
    • Structure and mechanism of DNA polymerase β
    • Beard W.A., Wilson S.H. Structure and mechanism of DNA polymerase β. Chem. Rev. 2006, 106:361-382.
    • (2006) Chem. Rev. , vol.106 , pp. 361-382
    • Beard, W.A.1    Wilson, S.H.2
  • 24
    • 4644259458 scopus 로고    scopus 로고
    • Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase
    • Brieba L.G., Eichman B.F., Kokoska R.J., Doublie S., Kunkel T.A., Ellenberger T. Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase. EMBO J. 2004, 23:3452-3461.
    • (2004) EMBO J. , vol.23 , pp. 3452-3461
    • Brieba, L.G.1    Eichman, B.F.2    Kokoska, R.J.3    Doublie, S.4    Kunkel, T.A.5    Ellenberger, T.6
  • 25
    • 2342484512 scopus 로고    scopus 로고
    • Lesion (in)tolerance reveals insights into DNA replication fidelity
    • Freisinger E., Grollman A.P., Miller H., Kisker C. Lesion (in)tolerance reveals insights into DNA replication fidelity. EMBO J. 2004, 23:1494-1505.
    • (2004) EMBO J. , vol.23 , pp. 1494-1505
    • Freisinger, E.1    Grollman, A.P.2    Miller, H.3    Kisker, C.4
  • 27
    • 33644866040 scopus 로고    scopus 로고
    • Efficient and high fidelity incorporation of dCTP opposite 7,8-dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA polymerase Dpo4
    • Zang H., Irimia A., Choi J.-Y., Angel K.C., Loukachevitch L.V., Egli M., Guengerich F.P. Efficient and high fidelity incorporation of dCTP opposite 7,8-dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA polymerase Dpo4. J. Biol. Chem. 2006, 281:2358-2372.
    • (2006) J. Biol. Chem. , vol.281 , pp. 2358-2372
    • Zang, H.1    Irimia, A.2    Choi, J.-Y.3    Angel, K.C.4    Loukachevitch, L.V.5    Egli, M.6    Guengerich, F.P.7
  • 28
    • 34547136494 scopus 로고    scopus 로고
    • Hydrogen bonding of 7,8-dihydro-8-oxodeoxyguanosine with a charged residue in the little finger domain determines miscoding events in Sulfolobus solfataricus DNA polymerase Dpo4
    • Eoff R.L., Irimia A., Angel K.C., Egli M., Guengerich F.P. Hydrogen bonding of 7,8-dihydro-8-oxodeoxyguanosine with a charged residue in the little finger domain determines miscoding events in Sulfolobus solfataricus DNA polymerase Dpo4. J. Biol. Chem. 2007, 282:19831-19843.
    • (2007) J. Biol. Chem. , vol.282 , pp. 19831-19843
    • Eoff, R.L.1    Irimia, A.2    Angel, K.C.3    Egli, M.4    Guengerich, F.P.5
  • 29
    • 27644597370 scopus 로고    scopus 로고
    • A lysine residue in the fingers subdomain of T7 DNA polymerase modulates the miscoding potential of 8-oxo-7,8-dihydroguanosine
    • Brieba L.G., Kokoska R.J., Bebenek K., Kunkel T.A., Ellenberger T. A lysine residue in the fingers subdomain of T7 DNA polymerase modulates the miscoding potential of 8-oxo-7,8-dihydroguanosine. Structure (Camb) 2005, 13:1653-1659.
    • (2005) Structure (Camb) , vol.13 , pp. 1653-1659
    • Brieba, L.G.1    Kokoska, R.J.2    Bebenek, K.3    Kunkel, T.A.4    Ellenberger, T.5
  • 30
    • 69249101227 scopus 로고    scopus 로고
    • Structural and functional elucidation of the mechanism promoting error-prone synthesis by human DNA polymerase κ opposite the 7,8-dihydro-8-oxo-2'-deoxyguanosine adduct
    • Irimia A., Eoff R.L., Guengerich F.P., Egli M. Structural and functional elucidation of the mechanism promoting error-prone synthesis by human DNA polymerase κ opposite the 7,8-dihydro-8-oxo-2'-deoxyguanosine adduct. J. Biol. Chem. 2009, 284:22467-22480.
    • (2009) J. Biol. Chem. , vol.284 , pp. 22467-22480
    • Irimia, A.1    Eoff, R.L.2    Guengerich, F.P.3    Egli, M.4
  • 31
    • 77952407219 scopus 로고    scopus 로고
    • Substitution of ala for Tyr567 in RB69 DNA polymerase allows dAMP to be inserted opposite 7,8-dihydro-8-oxoguanine
    • Beckman J., Wang M., Blaha G., Wang J., Konigsberg W.H. Substitution of ala for Tyr567 in RB69 DNA polymerase allows dAMP to be inserted opposite 7,8-dihydro-8-oxoguanine. Biochemistry 2010, 49:4116-4125.
    • (2010) Biochemistry , vol.49 , pp. 4116-4125
    • Beckman, J.1    Wang, M.2    Blaha, G.3    Wang, J.4    Konigsberg, W.H.5
  • 32
    • 42949164023 scopus 로고    scopus 로고
    • Structures of DNA polymerase β with active site mismatches suggest a transient abasic site intermediate during misincorporation
    • Batra V.K., Beard W.A., Shock D.D., Pedersen L.C., Wilson S.H. Structures of DNA polymerase β with active site mismatches suggest a transient abasic site intermediate during misincorporation. Mol. Cell. 2008, 30:315-324.
    • (2008) Mol. Cell. , vol.30 , pp. 315-324
    • Batra, V.K.1    Beard, W.A.2    Shock, D.D.3    Pedersen, L.C.4    Wilson, S.H.5
  • 33
    • 0034620584 scopus 로고    scopus 로고
    • 8-OxodGTP incorporation by DNA polymerase β is modified by active-site residue Asn279
    • Miller H., Prasad R., Wilson S.H., Johnson F., Grollman A.P. 8-OxodGTP incorporation by DNA polymerase β is modified by active-site residue Asn279. Biochemistry 2000, 39:1029-1033.
    • (2000) Biochemistry , vol.39 , pp. 1029-1033
    • Miller, H.1    Prasad, R.2    Wilson, S.H.3    Johnson, F.4    Grollman, A.P.5
  • 34
    • 4544273926 scopus 로고    scopus 로고
    • Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase
    • Hsu G.W., Ober M., Carell T., Beese L.S. Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase. Nature 2004, 431:217-221.
    • (2004) Nature , vol.431 , pp. 217-221
    • Hsu, G.W.1    Ober, M.2    Carell, T.3    Beese, L.S.4
  • 35
    • 65149093314 scopus 로고    scopus 로고
    • Impact of conformational heterogeneity of oxoG lesions and their pairing partners on bypass fidelity by Y family polymerases
    • Rechkoblit O., Malinina L., Cheng Y., Geacintov N.E., Broyde S., Patel D.J. Impact of conformational heterogeneity of oxoG lesions and their pairing partners on bypass fidelity by Y family polymerases. Structure (Camb) 2009, 17:725-736.
    • (2009) Structure (Camb) , vol.17 , pp. 725-736
    • Rechkoblit, O.1    Malinina, L.2    Cheng, Y.3    Geacintov, N.E.4    Broyde, S.5    Patel, D.J.6
  • 36
    • 70450257567 scopus 로고    scopus 로고
    • DNA polymerase β substrate specificity: side chain modulation of the " A-rule"
    • Beard W.A., Shock D.D., Batra V.K., Pedersen L.C., Wilson S.H. DNA polymerase β substrate specificity: side chain modulation of the " A-rule" J. Biol. Chem. 2009, 284:31680-31689.
    • (2009) J. Biol. Chem. , vol.284 , pp. 31680-31689
    • Beard, W.A.1    Shock, D.D.2    Batra, V.K.3    Pedersen, L.C.4    Wilson, S.H.5
  • 37
    • 34249870372 scopus 로고    scopus 로고
    • 8-oxo-guanine bypass by human DNA polymerases in the presence of auxiliary proteins
    • Maga G., Villani G., Crespan E., Wimmer U., Ferrari E., Bertocci B., Hubscher U. 8-oxo-guanine bypass by human DNA polymerases in the presence of auxiliary proteins. Nature 2007, 447:606-608.
    • (2007) Nature , vol.447 , pp. 606-608
    • Maga, G.1    Villani, G.2    Crespan, E.3    Wimmer, U.4    Ferrari, E.5    Bertocci, B.6    Hubscher, U.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.