메뉴 건너뛰기




Volumn 110, Issue 20, 2013, Pages 8146-8151

Mechanism of somatic hypermutation at the WA motif by human DNA polymerase n

Author keywords

A to G transition; Immunoglobulin; P cation stacking

Indexed keywords

DEOXYADENOSINE TRIPHOSPHATE; DEOXYGUANOSINE TRIPHOSPHATE; DNA BASE; DNA DIRECTED DNA POLYMERASE ETA; PURINE; PYRIMIDINE;

EID: 84877867629     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1303126110     Document Type: Article
Times cited : (69)

References (41)
  • 1
    • 0023510298 scopus 로고
    • Evolutionary and somatic selection of tghe antibody repertoire in the mouse
    • Rajewsky K, Förster I, Cumano A (1987) Evolutionary and somatic selection of the antibody repertoire in the mouse. Science 238(4830):1088-1094. (Pubitemid 18011949)
    • (1987) Science , vol.238 , Issue.4830 , pp. 1088-1094
    • Rajewsky, K.1    Forster, I.2    Cumano, A.3
  • 2
    • 0019847882 scopus 로고
    • Antibody diversity: Somatic hypermutation of rearranged V(H) genes
    • Kim S, Davis M, Sinn E, Patten P, Hood L (1981) Antibody diversity: Somatic hypermutation of rearranged VH genes. Cell 27(3 Pt 2):573-581. (Pubitemid 12200794)
    • (1981) Cell , vol.27 , Issue.3 , pp. 573-581
    • Kim, S.1    Davis, M.2    Sinn, E.3
  • 3
    • 34249790004 scopus 로고    scopus 로고
    • Molecular mechanisms of antibody somatic hypermutation
    • Di Noia JM, Neuberger MS (2007) Molecular mechanisms of antibody somatic hypermutation. Annu Rev Biochem 76:1-22.
    • (2007) Annu Rev Biochem , vol.76 , pp. 1-22
    • Di Noia, J.M.1    Neuberger, M.S.2
  • 4
    • 0037901850 scopus 로고    scopus 로고
    • Human activation-induced cytidine deaminase causes transcription- dependent, strand-biased C to U deaminations
    • DOI 10.1093/nar/gkg464
    • Sohail A, Klapacz J, Samaranayake M, Ullah A, Bhagwat AS (2003) Human activationinduced cytidine deaminase causes transcription-dependent, strand-biased C to U deaminations. Nucleic Acids Res 31(12):2990-2994. (Pubitemid 37441756)
    • (2003) Nucleic Acids Research , vol.31 , Issue.12 , pp. 2990-2994
    • Sohail, A.1    Klapacz, J.2    Samaranayake, M.3    Ullah, A.4    Bhagwat, A.S.5
  • 5
    • 34249801641 scopus 로고    scopus 로고
    • Discovery of Activation-Induced Cytidine Deaminase, the Engraver of Antibody Memory
    • DOI 10.1016/S0065-2776(06)94001-2, PII S0065277606940012, AID for Immunoglobulin Diversity
    • MuramatsuM, Nagaoka H, Shinkura R, Begum NA, Honjo T (2007) Discovery of activationinduced cytidine deaminase, the engraver of antibody memory. Adv Immunol 94:1-36. (Pubitemid 46863447)
    • (2007) Advances in Immunology , vol.94 , pp. 1-36
    • Muramatsu, M.1    Nagaoka, H.2    Shinkura, R.3    Begum, N.A.4    Honjo, T.5
  • 6
    • 6344256944 scopus 로고    scopus 로고
    • Mismatch recognition and uracil excision provide complementary paths to both Ig switching and the A/T-focused phase of somatic mutation
    • DOI 10.1016/j.molcel.2004.10.011, PII S1097276504006136
    • Rada C, Di Noia JM, Neuberger MS (2004) Mismatch recognition and uracil excision provide complementary paths to both Ig switching and the A/T-focused phase of somatic mutation. Mol Cell 16(2):163-171. (Pubitemid 39388832)
    • (2004) Molecular Cell , vol.16 , Issue.2 , pp. 163-171
    • Rada, C.1    Di Noia, J.M.2    Neuberger, M.S.3
  • 8
    • 65249161710 scopus 로고    scopus 로고
    • Interference of mismatch and base excision repair during the processing of adjacent U/G mispairs may play a key role in somatic hypermutation
    • Schanz S, Castor D, Fischer F, Jiricny J (2009) Interference of mismatch and base excision repair during the processing of adjacent U/G mispairs may play a key role in somatic hypermutation. Proc Natl Acad Sci USA 106(14):5593-5598.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.14 , pp. 5593-5598
    • Schanz, S.1    Castor, D.2    Fischer, F.3    Jiricny, J.4
  • 12
    • 0034660259 scopus 로고    scopus 로고
    • Mechanisms of accurate translesion synthesis by human DNA polymerase η
    • Masutani C, Kusumoto R, Iwai S, Hanaoka F (2000) Mechanisms of accurate translesion synthesis by human DNA polymerase eta. EMBO J 19(12):3100-3109. (Pubitemid 30386780)
    • (2000) EMBO Journal , vol.19 , Issue.12 , pp. 3100-3109
    • Masutani, C.1    Kusumoto, R.2    Iwai, S.3    Hanaoka, F.4
  • 16
    • 0034720285 scopus 로고    scopus 로고
    • Low fidelity DNA synthesis by human DNA polymerase-η
    • DOI 10.1038/35010014
    • Matsuda T, Bebenek K, Masutani C, Hanaoka F, Kunkel TA (2000) Low fidelity DNA synthesis by human DNA polymerase-eta. Nature 404(6781):1011-1013. (Pubitemid 30243597)
    • (2000) Nature , vol.404 , Issue.6781 , pp. 1011-1013
    • Matsuda, T.1    Bebenek, K.2    Masultanl, C.3    Hanaoka, F.4    Kunkel, T.A.5
  • 18
    • 1842732235 scopus 로고    scopus 로고
    • Absence of DNA Polymerase η Reveals Targeting of C Mutations on the Nontranscribed Strand in Immunoglobulin Switch Regions
    • DOI 10.1084/jem.20032022
    • Zeng X, Negrete GA, Kasmer C, Yang WW, Gearhart PJ (2004) Absence of DNA polymerase eta reveals targeting of C mutations on the nontranscribed strand in immunoglobulin switch regions. J Exp Med 199(7):917-924. (Pubitemid 38481083)
    • (2004) Journal of Experimental Medicine , vol.199 , Issue.7 , pp. 917-924
    • Zeng, X.1    Negrete, G.A.2    Kasmer, C.3    Yang, W.W.4    Gearhart, P.J.5
  • 21
    • 0035379581 scopus 로고    scopus 로고
    • Somatic mutation hotspots correlate with DNA polymerase η error spectrum
    • DOI 10.1038/88732
    • Rogozin IB, Pavlov YI, Bebenek K, Matsuda T, Kunkel TA (2001) Somatic mutation hotspots correlate with DNA polymerase eta error spectrum. Nat Immunol 2(6): 530-536. (Pubitemid 33705855)
    • (2001) Nature Immunology , vol.2 , Issue.6 , pp. 530-536
    • Rogozin, I.B.1    Pavlov, Y.I.2    Bebenek, K.3    Matsuda, T.4    Kunkel, T.A.5
  • 23
    • 33846404877 scopus 로고    scopus 로고
    • DNA polymerase η is the sole contributor of A/T modifications during immunoglobulin gene hypermutation in the mouse
    • DOI 10.1084/jem.20062131
    • Delbos F, Aoufouchi S, Faili A, Weill JC, Reynaud CA (2007) DNA polymerase eta is the sole contributor of A/T modifications during immunoglobulin gene hypermutation in the mouse. J Exp Med 204(1):17-23. (Pubitemid 46148751)
    • (2007) Journal of Experimental Medicine , vol.204 , Issue.1 , pp. 17-23
    • Delbos, F.1    Aoufouchi, S.2    Faili, A.3    Weill, J.-C.4    Reynaud, C.-A.5
  • 24
    • 84861887954 scopus 로고    scopus 로고
    • Structural basis for cisplatin DNA damage tolerance by human polymerase η during cancer chemotherapy
    • Ummat A, et al. (2012) Structural basis for cisplatin DNA damage tolerance by human polymerase η during cancer chemotherapy. Nat Struct Mol Biol 19(6): 628-632.
    • (2012) Nat Struct Mol Biol , vol.19 , Issue.6 , pp. 628-632
    • Ummat, A.1
  • 25
    • 84860792390 scopus 로고    scopus 로고
    • Structural basis of human DNA polymerase η-mediated chemoresistance to cisplatin
    • Zhao Y, et al. (2012) Structural basis of human DNA polymerase η-mediated chemoresistance to cisplatin. Proc Natl Acad Sci USA 109(19):7269-7274.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.19 , pp. 7269-7274
    • Zhao, Y.1
  • 26
    • 84856217776 scopus 로고    scopus 로고
    • Human DNA polymerase η is pre-aligned for dNTP binding and catalysis
    • Ummat A, et al. (2012) Human DNA polymerase η is pre-aligned for dNTP binding and catalysis. J Mol Biol 415(4):627-634.
    • (2012) J Mol Biol , vol.415 , Issue.4 , pp. 627-634
    • Ummat, A.1
  • 27
    • 77953924511 scopus 로고    scopus 로고
    • Structure and mechanism of human DNA polymerase eta
    • Biertümpfel C, et al. (2010) Structure and mechanism of human DNA polymerase eta. Nature 465(7301):1044-1048.
    • (2010) Nature , vol.465 , Issue.7301 , pp. 1044-1048
    • Biertümpfel, C.1
  • 28
    • 84863676249 scopus 로고    scopus 로고
    • Watching DNA polymerase η make a phosphodiester bond
    • Nakamura T, Zhao Y, Yamagata Y, Hua YJ, YangW(2012) Watching DNA polymerase η make a phosphodiester bond. Nature 487(7406):196-201.
    • (2012) Nature , vol.487 , Issue.7406 , pp. 196-201
    • Nakamura, T.1    Zhao, Y.2    Yamagata, Y.3    Hua, Y.J.4    Yang, W.5
  • 29
    • 0034979126 scopus 로고    scopus 로고
    • Hydrogen bonding, base stacking, and steric effects in DNA replication
    • DOI 10.1146/annurev.biophys.30.1.1
    • Kool ET (2001) Hydrogen bonding, base stacking, and steric effects in DNA replication. Annu Rev Biophys Biomol Struct 30:1-22. (Pubitemid 32566154)
    • (2001) Annual Review of Biophysics and Biomolecular Structure , vol.30 , pp. 1-22
    • Kool, E.T.1
  • 30
    • 4043129033 scopus 로고    scopus 로고
    • Interaction of DNA with clusters of amino acids in proteins
    • DOI 10.1093/nar/gkh733
    • Sathyapriya R, Vishveshwara S (2004) Interaction of DNA with clusters of amino acids in proteins. Nucleic Acids Res 32(14):4109-4118. (Pubitemid 39232283)
    • (2004) Nucleic Acids Research , vol.32 , Issue.14 , pp. 4109-4118
    • Sathyapriya, R.1    Vishveshwara, S.2
  • 32
    • 72549092945 scopus 로고    scopus 로고
    • Structural insight into translesion synthesis by DNA Pol II
    • Wang F, Yang W (2009) Structural insight into translesion synthesis by DNA Pol II. Cell 139(7):1279-1289.
    • (2009) Cell , vol.139 , Issue.7 , pp. 1279-1289
    • Wang, F.1    Yang, W.2
  • 33
    • 27144542782 scopus 로고    scopus 로고
    • Fidelity of Dpo4: Effect of metal ions, nucleotide selection and pyrophosphorolysis
    • DOI 10.1038/sj.emboj.7600786, PII 7600786
    • Vaisman A, Ling H, Woodgate R, YangW(2005) Fidelity of Dpo4: Effect of metal ions, nucleotide selection and pyrophosphorolysis. EMBO J 24(17):2957-2967. (Pubitemid 41486333)
    • (2005) EMBO Journal , vol.24 , Issue.17 , pp. 2957-2967
    • Vaisman, A.1    Ling, H.2    Woodgate, R.3    Yang, W.4
  • 34
    • 67349236998 scopus 로고    scopus 로고
    • Structural basis of error-prone replication and stalling at a thymine base by human DNA polymerase iota
    • Kirouac KN, Ling H (2009) Structural basis of error-prone replication and stalling at a thymine base by human DNA polymerase iota. EMBO J 28(11):1644-1654.
    • (2009) EMBO J , vol.28 , Issue.11 , pp. 1644-1654
    • Kirouac, K.N.1    Ling, H.2
  • 36
    • 0036786471 scopus 로고    scopus 로고
    • The role of polymerase eta in somatic hypermutation determined by analysis of mutations in a patient with xeroderma pigmentosum variant
    • Yavuz S, Yavuz AS, Kraemer KH, Lipsky PE (2002) The role of polymerase eta in somatic hypermutation determined by analysis of mutations in a patient with xeroderma pigmentosum variant. J Immunol 169(7):3825-3830.
    • (2002) J Immunol , vol.169 , Issue.7 , pp. 3825-3830
    • Yavuz, S.1    Yavuz, A.S.2    Kraemer, K.H.3    Lipsky, P.E.4
  • 37
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • DOI 10.1016/S0076-6879(97)76066-X
    • Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276:307-326. (Pubitemid 27085611)
    • (1997) Methods in Enzymology , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 39
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • Collaborative Computational Project Number 4
    • Collaborative Computational Project, Number 4 (1994) The CCP4 suite: Programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 50(Pt 5):760-763.
    • (1994) Acta Crystallogr D Biol Crystallogr , vol.50 , Issue.PART 5 , pp. 760-763
  • 41
    • 76449098262 scopus 로고    scopus 로고
    • PHENIX: A comprehensive Python-based system for macromolecular structure solution
    • Adams PD, et al. (2010) PHENIX: A comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66(Pt 2): 213-221.
    • (2010) Acta Crystallogr D Biol Crystallogr , vol.66 , Issue.PART 2 , pp. 213-221
    • Adams, P.D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.