Identification and characterization of microRNAs in the ovaries of multiple and uniparous goats (Capra hircus) during follicular phase

BMC Genomics

Volumn 15, Issue 1, 2014, Pages

  Ling, Ying Hui ^a,b   Ren, Chun Huan ^a,b   Guo, Xiao Fei ^a,b   Xu, Li Na ^c   Huang, Ya Feng ^a,b   Luo, Jian Chuan ^a,b   Zhang, Yun Hai ^a,b   Zhang, Xiao Rong ^a,b   Zhang, Zi Jun ^a,b  

^a ANHUI AGRICULTURAL UNIVERSITY   (China)

^b Local Animal Genetic Resources Conservation and Biobreeding Laboratory of Anhui Province   (China)

^c RICE RESEARCH INSTITUTE   (China)

Author keywords

Follicular phase; Goat; Kidding rate; MicroRNA; Ovary; Solexa sequencing

Indexed keywords

MICRORNA; MICRORNA 1196B; MICRORNA 14090 3P; MICRORNA 1589; MICRORNA 1591 3P; MICRORNA 1692; MICRORNA 29C; MICRORNA 3135B; MICRORNA 3934 5P; MICRORNA 4001E 3P; MICRORNA 4674; MICRORNA 6215; MICRORNA 6317; MICRORNA 6406; UNCLASSIFIED DRUG;

ANIMAL TISSUE; ARTICLE; BIRTH RATE; CONTROLLED STUDY; DOMESTIC GOAT; FEMALE; FOLLICULAR PHASE; GENE EXPRESSION; GENE LIBRARY; GENE MAPPING; KIDDING RATE; MOLECULAR GENETICS; MULTIPARA; NAMED GROUPS BY PREGNANCY; NONHUMAN; OVARY; OVULATION; REAL TIME POLYMERASE CHAIN REACTION; RNA ANALYSIS; RNA DEGRADATION; RNA SEQUENCE; SEQUENCE ANALYSIS; TRANSCRIPTION REGULATION; UNIPARA; ANIMAL; GENETICS; GOAT; METABOLISM; POLYMERASE CHAIN REACTION; RNA PROCESSING; VALIDATION STUDY;

CAPRA HIRCUS;

ANIMALS; FEMALE; FOLLICULAR PHASE; GOATS; MICRORNAS; OVARY; POLYMERASE CHAIN REACTION; RNA PROCESSING, POST-TRANSCRIPTIONAL;

EID: 84900427004     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-339     Document Type: Article

References (50)

1. Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116(2):281-297. 10.1016/S0092-8674(04)00045-5, 14744438.
2. Hu SJ, Ren G, Liu JL, Zhao ZA, Yu YS, Su RW, Ma XH, Ni H, Lei W, Yang ZM. MicroRNA expression and regulation in mouse uterus during embryo implantation. J Biol Chem 2008, 283(34):23473-23484. 10.1074/jbc.M800406200, 18556655.
3. Hwang HW, Mendell JT. MicroRNAs in cell proliferation, cell death, and tumorigenesis. Br J Cancer 2006, 94(6):776-780. 10.1038/sj.bjc.6603023, 2361377, 16495913.
4. Ivey KN, Srivastava D. MicroRNAs as regulators of differentiation and cell fate decisions. Cell Stem Cell 2010, 7(1):36-41. 10.1016/j.stem.2010.06.012, 20621048.
5. Ambros V. The functions of animal microRNAs. Nature 2004, 431(7006):350-355. 10.1038/nature02871, 15372042.
6. Jansson MD, Lund AH. MicroRNA and cancer. Mol Oncol 2012, 6(6):590-610. 10.1016/j.molonc.2012.09.006, 23102669.
7. Cuellar TL, McManus MT. MicroRNAs and endocrine biology. J Endocrinol 2005, 187(3):327-332. 10.1677/joe.1.06426, 16423811.
8. Rottiers V, Näär AM. MicroRNAs in metabolism and metabolic disorders. Nat Rev Mol Cell Biol 2012, 13(4):239-250. 10.1038/nrm3313, 22436747.
9. Hawkins SM, Buchold GM, Matzuk MM. Minireview: the roles of small RNA pathways in reproductive medicine. Mol Endocrinol 2011, 25(8):1257-1279. 10.1210/me.2011-0099, 3146245, 21546411.
10. Ji Z, Wang G, Xie Z, Wang J, Zhang C, Dong F, Chen C. Identification of novel and differentially expressed microRNAs of dairy goat mammary gland tissues using Solexa sequencing and bioinformatics. PLoS One 2012, 7(11):e49463. 10.1371/journal.pone.0049463, 3498112, 23166677.
11. Liu Z, Xiao H, Li H, Zhang Y, Lai S, Yu X, Cai T, Du C, Zhang W, Li J. Identification of conserved and vovel microRNAs in cashmere goat skin by deep sequencing. PLoS One 2012, 7(12):e50001. 10.1371/journal.pone.0050001, 3517574, 23236360.
12. Ling YH, Ding JP, Zhang XD, Wang LJ, Zhang YH, Li YS, Zhang ZJ, Zhang XR. Characterization of microRNAs from goat (Capra hircus) by Solexa deep-sequencing technology. Genet Mol Res 2013, 12(2):1951. 10.4238/2013.June.13.4, 23913378.
13. Zhang XD, Zhang YH, Ling YH, Liu Y, Cao HG, Yin ZJ, Ding JP, Zhang XR. Characterization and differential expression of microRNAs in the ovaries of pregnant and non-pregnant goats (Capra hircus). BMC Genomics 2013, 14(1):157. 10.1186/1471-2164-14-157, 3599660, 23497306.
14. Lin X, Luo J, Zhang L, Wang W, Gou D. MiR-103 controls milk fat accumulation in goat (Capra hircus) mammary gland during lactation. PLoS One 2013, 8(11):e79258. 10.1371/journal.pone.0079258, 3823599, 24244462.
15. Kim HJ, Cui XS, Kim EJ, Kim WJ, Kin NH. New porcine microRNA genes found by homology search. Genome 2006, 49(10):1283-1286. 10.1139/g06-120, 17213910.
16. Ro S, Song R, Park C, Zheng H, Sanders KM, Yan W. Cloning and expression profiling of small RNAs expressed in the mouse ovary. RNA 2007, 13(12):2366-2380. 10.1261/rna.754207, 2080611, 17951331.
17. Otsuka M, Zheng M, Hayashi M, Lee JD, Yoshino O, Lin S, Han J. Impaired microRNA processing causes corpus luteum insufficiency and infertility in mice. J Clin Invest 2008, 118(5):1944. 10.1172/JCI33680, 2289794, 18398510.
18. Menchaca A, Pinczak A, Rubianes E. Follicular recruitment and ovulatory response to FSH treatment initiated on day 0 or day 3 postovulation in goats. Theriogenology 2002, 58(9):1713-1721. 10.1016/S0093-691X(02)01084-1, 12472141.
19. Messinis IE, Templeton AA. The importance of follicle-stimulating hormone increase for folliculogenesis. Hum Reprod 1990, 5(2):153-156.
20. Van der Meer M, Hompes PGA, Scheele F, Schoute E, Veersema S, Schoemaker J. Endocrinology: Follicle stimulating hormone (FSH) dynamics of low dose step-up ovulation induction with FSH in patients with polycystic ovary syndrome. Hum Reprod 1994, 9(9):1612-1617.
21. Ganguly A, Meur SK, Ganguly I. Changes in circulatory FSH of Barbari goats following treatment with high molecular weight inhibin isolated from buffalo follicular fluid. Res Vet Sci 2013, 95(2):374-380. 10.1016/j.rvsc.2013.03.013, 23602073.
22. Juengel JL, Hudson NL, Whiting L, McNatty KP. Effects of immunization against bone morphogenetic protein 15 and growth differentiation factor 9 on ovulation rate, fertilization, and pregnancy in ewes. Biol Reprod 2004, 70(3):557-561.
23. Orisaka M, Jiang JY, Orisaka S, Kotsuji F, Tsang BK. Growth differentiation factor 9 promotes rat preantral follicle growth by up-regulating follicular androgen biosynthesis. Endocrinology 2009, 150(6):2740-2748. 10.1210/en.2008-1536, 19213837.
24. Hanrahan JP, Gregan SM, Mulsant P, Mullen M, Davis GH, Powell R, Galloway SM. Mutations in the genes for oocyte-derived growth factors GDF9 and BMP15 are associated with both increased ovulation rate and sterility in Cambridge and Belclare sheep (Ovis aries). Biol Reprod 2004, 70(4):900-909.
25. Galloway SM, McNatty KP, Cambridge LM, Laitinen MPE, Juengel JL, Jokiranta TS, McLaren RJ, Luiro K, Dodds KG, Montgomery GW, Beattie AE, Davis GH, Ritvos O. Mutations in an oocyte-derived growth factor gene (BMP15) cause increased ovulation rate and infertility in a dosage-sensitive manner. Nat Genet 2000, 25(3):279-283. 10.1038/77033, 10888873.
26. Cummins LJ, Oshea T, Bindon BM, Lee VWK, Findlay JK. Ovarian inhibin content and sensitivity to inhibin in Booroola and control strain Merino ewes. J Reprod Fertil 1983, 67(1):1-7. 10.1530/jrf.0.0670001, 6401808.
27. McBride D, Carre W, Sontakke SD, Hogg CO, Law A, Donadeu FX, Clinton M. Identification of miRNAs associated with the follicular-luteal transition in the ruminant ovary. Reproduction 2012, 144(2):221-233. 10.1530/REP-12-0025, 22653318.
28. Yao G, Yin M, Lian J, Tian H, Liu L, Li X, Sun F. MicroRNA-224 is involved in transforming growth factor-beta-mediated mouse granulosa cell proliferation and granulosa cell function by targeting Smad4. Mol Endocrinol 2010, 24:540-551. 10.1210/me.2009-0432, 20118412.
29. Murchison EP, Stein P, Xuan Z, Pan H, Zhang MQ, Schultz RM, Hannon GJ. Critical roles for Dicer in the female germline. Genes Dev 2007, 21(6):682-693. 10.1101/gad.1521307, 1820942, 17369401.
30. Lin F, Li R, Pan Z, Zhou B, Yu D, Wang X, Ma X, Han J, Shen M, Liu H. miR-26b promotes granulosa cell apoptosis by targeting ATM during follicular atresia in porcine ovary. PLoS One 2012, 7(6):e38640. 10.1371/journal.pone.0038640, 3380909, 22737216.
31. Sheedy FJ, Palsson-McDermott E, Hennessy EJ, Martin C, O'Leary JJ, Ruan Q, Jojnson DJ, Chen Y, O'Neill LAJ. Negative regulation of TLR4 via targeting of the proinflammatory tumor suppressor PDCD4 by the microRNA miR-21. Nat Immunol 2010, 11(2):141-147. 10.1038/ni.1828, 19946272.
32. Xie SS, Li XY, Liu T, Cao JH, Zhong Q, Zhao SH. Discovery of porcine microRNAs in multiple tissues by a Solexa deep sequencing approach. PLoS One 2011, 6(1):e16235. 10.1371/journal.pone.0016235, 3026822, 21283541.
33. Calabrese JM, Seila AC, Yeo GW, Sharp PA. RNA sequence analysis defines Dicer's role in mouse embryonic stem cells. Proc Natl Acad Sci U S A 2007, 104(46):18097-18102. 10.1073/pnas.0709193104, 2084302, 17989215.
34. Hao DC, Yang L, Xiao PG, Liu M. Identification of Taxus microRNAs and their targets with high-throughput sequencing and degradome analysis. Physiol Plant 2012, 146(4):388-403. 10.1111/j.1399-3054.2012.01668.x, 22708792.
35. Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J. Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle. Int J Biol Sci 2011, 7(7):1016. 3164151, 21912509.
36. Yuan C, Wang X, Geng R, He X, Qu L, Chen Y. Discovery of cashmere goat (Capra hircus) microRNAs in skin and hair follicles by Solexa sequencing. BMC Genomics 2013, 14(1):511. 10.1186/1471-2164-14-511, 3765263, 23889850.
37. Zhang Y, Zhou X, Ge X, Jiang J, Li M, Jia S, Yang X, Kan Y, Miao G, Zhao G, Li F, Huang Y. Insect-specific microRNA involved in the development of the silkworm Bombyx mori. PLoS One 2009, 4(3):e4677. 10.1371/journal.pone.0004677, 2650705, 19262741.
38. Schneider MR. MicroRNAs as novel players in skin development, homeostasis and disease. Br J Dermatol 2012, 166(1):22-28.
39. Mardaryev AN, Ahmed MI, Vlahov NV, Fessing MY, Gill JH, Sharov AA, Botchkareva NV. Micro-RNA-31 controls hair cycle-associated changes in gene expression programs of the skin and hair follicle. FASEB J 2010, 24(10):3869-3881. 10.1096/fj.10-160663, 20522784.
40. Easow G, Teleman AA, Cohen SM. Isolation of microRNA targets by miRNP immunopurification. RNA 2007, 13(8):1198-1204. 10.1261/rna.563707, 1924889, 17592038.
41. Mascarenhas R, Simões Nunes A, Robalo Silva J. Cyclic reproductive activity and efficiency of reproduction in Serrana goats. Anim Reprod Sci 1995, 38(3):223-229.
42. Khanum SA, Hussain M, Kausar R. Assessment of reproductive parameters in female Dwarf goat (Capra hircus) on the basis of progesterone profiles. Anim Reprod Sci 2007, 102(3):267-275.
43. Zhang CY, Chen SL, Li X, Xu DQ, Zhang Y, Yang LG. Genetic and phenotypic parameter estimates for reproduction traits in the Boer dam. Livest Sci 2009, 125(1):60-65.
44. Bradford GE, Quirk JF, Famula TR. Fertility, embryo survival and littex size in lines of Targhee sheep selected for weaning weight or titter size. J Anim Sci 1986, 62:395.
45. Scaramuzzi RJ, Adams NR, Baird DT, Campbell BK, Downing JA, Findlay JK, Henderson KM, Martin GB, McNatty KP, McNeilly AS, Tsonis CG. A model for follicle selection and the determination of ovulation rate in the ewe. Reprod Fertil Dev 1993, 5(5):459-478. 10.1071/RD9930459, 8190903.
46. Carletti MZ, Fiedler SD, Christenson LK. MicroRNA 21 blocks apoptosis in mouse periovulatory granulosa cells. Biol Reprod 2010, 83(2):286-295. 10.1095/biolreprod.109.081448, 2907287, 20357270.
47. Yao N, Yang BQ, Liu Y, Tan XY, Lu CL, Yuan XH, Ma X. Follicle-stimulating hormone regulation of microRNA expression on progesterone production in cultured rat granulosa cells. Endocrine 2010, 38(2):158-166. 10.1007/s12020-010-9345-1, 20734245.
48. Humphreys DT, Hynes CJ, Patel HR, Wei GH, Cannon L, Fatkin D, Suter CM, Clancy JL, Preiss T. Complexity of murine cardiomyocyte miRNA biogenesis, sequence variant expression and function. PLoS One 2012, 7(2):e30933. 10.1371/journal.pone.0030933, 3272019, 22319597.
49. Schoenian SG, Burfening PJ. Ovulation rate, lambing rate, litter size and embryo survival of Rambouillet sheep selected for high and low reproductive rate. J Anim Sci 1990, 68(8):2263-2270.
50. Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, Yamanishi Y. KEGG for linking genomes to life and the environment. Nucleic Acids Res 2008, 36(suppl 1):D480-D484. 2238879, 18077471.