메뉴 건너뛰기




Volumn 12, Issue 2, 2013, Pages 1951-1961

Characterization of microRNAs from goat (Capra hircus) by Solexa deep-sequencing technology

Author keywords

Goat; MicroRNA characteristics; Real time quantitative PCR; Solexa deep sequencing technology

Indexed keywords

COMPLEMENTARY DNA; MICRORNA;

EID: 84879149392     PISSN: None     EISSN: 16765680     Source Type: Journal    
DOI: 10.4238/2013.June.13.4     Document Type: Article
Times cited : (11)

References (35)
  • 1
    • 17444430392 scopus 로고    scopus 로고
    • microRNA-directed phasing during trans-acting siRNA biogenesis in plants
    • Allen E, Xie Z, Gustafson AM and Carrington JC (2005). microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121: 207-221.
    • (2005) Cell , vol.121 , pp. 207-221
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Carrington, J.C.4
  • 2
    • 77956370863 scopus 로고    scopus 로고
    • microRNA-1 and microRNA-206 regulate skeletal muscle satellite cell proliferation and differentiation by repressing Pax7
    • Chen JF, Tao Y, Li J, Deng Z, et al. (2010). microRNA-1 and microRNA-206 regulate skeletal muscle satellite cell proliferation and differentiation by repressing Pax7. J. Cell Biol. 190: 867-879.
    • (2010) J. Cell Biol. , vol.190 , pp. 867-879
    • Chen, J.F.1    Tao, Y.2    Li, J.3    Deng, Z.4
  • 3
    • 37349008944 scopus 로고    scopus 로고
    • miRNApath: A database of miRNAs, target genes and metabolic pathways
    • Chiromatzo AO, Oliveira TY, Pereira G, Costa AY, et al. (2007). miRNApath: a database of miRNAs, target genes and metabolic pathways. Genet. Mol. Res. 6: 859-865.
    • (2007) Genet. Mol. Res. , vol.6 , pp. 859-865
    • Chiromatzo, A.O.1    Oliveira, T.Y.2    Pereira, G.3    Costa, A.Y.4
  • 4
    • 80855161003 scopus 로고    scopus 로고
    • How to choose a normalization strategy for miRNA quantitative real-time (qPCR) arrays
    • Deo A, Carlsson J and Lindlof A (2011). How to choose a normalization strategy for miRNA quantitative real-time (qPCR) arrays. J. Bioinform. Comput. Biol. 9: 795-812.
    • (2011) J. Bioinform. Comput. Biol. , vol.9 , pp. 795-812
    • Deo, A.1    Carlsson, J.2    Lindlof, A.3
  • 5
    • 79957647418 scopus 로고    scopus 로고
    • Aging and microRNA expression in human skeletal muscle: A microarray and bioinformatics analysis
    • Drummond MJ, McCarthy JJ, Sinha M, Spratt HM, et al. (2011). Aging and microRNA expression in human skeletal muscle: a microarray and bioinformatics analysis. Physiol. Genomics 43: 595-603.
    • (2011) Physiol. Genomics , vol.43 , pp. 595-603
    • Drummond, M.J.1    McCarthy, J.J.2    Sinha, M.3    Spratt, H.M.4
  • 6
    • 79960774021 scopus 로고    scopus 로고
    • Identification and differential expression of microRNAs during metamorphosis of the Japanese flounder (Paralichthys olivaceus)
    • Fu Y, Shi Z, Wu M, Zhang J, et al. (2011). Identification and differential expression of microRNAs during metamorphosis of the Japanese flounder (Paralichthys olivaceus). PLoS. One. 6: e22957.
    • (2011) PLoS. One. , vol.6
    • Fu, Y.1    Shi, Z.2    Wu, M.3    Zhang, J.4
  • 7
    • 78651301788 scopus 로고    scopus 로고
    • IGF-II is regulated by microRNA-125b in skeletal myogenesis
    • Ge Y, Sun Y and Chen J (2011). IGF-II is regulated by microRNA-125b in skeletal myogenesis. J. Cell Biol. 192: 69-81.
    • (2011) J. Cell Biol. , vol.192 , pp. 69-81
    • Ge, Y.1    Sun, Y.2    Chen, J.3
  • 8
    • 33847304124 scopus 로고    scopus 로고
    • CD34+ hematopoietic stem-progenitor cell microRNA expression and function: A circuit diagram of differentiation control
    • Georgantas RW 3rd, Hildreth R, Morisot S, Alder J, et al. (2007). CD34+ hematopoietic stem-progenitor cell microRNA expression and function: a circuit diagram of differentiation control. Proc. Natl. Acad. Sci. U.S. A 104: 2750-2755.
    • (2007) Proc. Natl. Acad. Sci. U.S. A , vol.104 , pp. 2750-2755
    • Georgantas III, R.W.1    Hildreth, R.2    Morisot, S.3    Alder, J.4
  • 9
    • 84866780154 scopus 로고    scopus 로고
    • Serum microRNA expression in pregnancies with preeclampsia
    • Gunel T, Zeybek YG, Akcakaya P, Kalelioglu I, et al. (2011). Serum microRNA expression in pregnancies with preeclampsia. Genet. Mol. Res. 10: 4034-4040.
    • (2011) Genet. Mol. Res. , vol.10 , pp. 4034-4040
    • Gunel, T.1    Zeybek, Y.G.2    Akcakaya, P.3    Kalelioglu, I.4
  • 10
    • 84893016106 scopus 로고    scopus 로고
    • The expression profile analysis of sexual dimorphism miRNAs expressed in chicken embryo at early stages of sex differentiation
    • Huang P, Gong YZ, Peng XL and Li SJ (2010). The expression profile analysis of sexual dimorphism miRNAs expressed in chicken embryo at early stages of sex differentiation. J. Agricultura Biotechnol. 18: 1149-1155.
    • (2010) J. Agricultura Biotechnol. , vol.18 , pp. 1149-1155
    • Huang, P.1    Gong, Y.Z.2    Peng, X.L.3    Li, S.J.4
  • 11
    • 84555196419 scopus 로고    scopus 로고
    • Determination of miRNA targets in skeletal muscle cells
    • Huang ZP, Espinoza-Lewis R and Wang DZ (2012). Determination of miRNA targets in skeletal muscle cells. Methods Mol. Biol. 798: 475-490.
    • (2012) Methods Mol. Biol. , vol.798 , pp. 475-490
    • Huang, Z.P.1    Espinoza-Lewis, R.2    Wang, D.Z.3
  • 12
    • 84868574557 scopus 로고    scopus 로고
    • Identification and characterization of microRNA in the dairy goat (Capra hircus) mammary gland by Solexa deep-sequencing technology
    • Ji Z, Wang G, Xie Z, Zhang C, et al. (2012). Identification and characterization of microRNA in the dairy goat (Capra hircus) mammary gland by Solexa deep-sequencing technology. Mol. Biol. Rep. 39: 9361-9371.
    • (2012) Mol. Biol. Rep. , vol.39 , pp. 9361-9371
    • Ji, Z.1    Wang, G.2    Xie, Z.3    Zhang, C.4
  • 13
    • 84863230275 scopus 로고    scopus 로고
    • The polymorphism in 5 'Regulatory region and exon 13 of PRKAG3 gene and its distribution pattern in different goat breeds
    • Jin H, Chen HQ, Qin J, Zhu YJ, et al. (2012). The polymorphism in 5 'Regulatory region and exon 13 of PRKAG3 gene and its distribution pattern in different goat breeds. Asian J. Anim. Vet. Adv. 7: 568-577.
    • (2012) Asian J. Anim. Vet. Adv. , vol.7 , pp. 568-577
    • Jin, H.1    Chen, H.Q.2    Qin, J.3    Zhu, Y.J.4
  • 14
    • 2942672580 scopus 로고    scopus 로고
    • Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    • Jones-Rhoades MW and Bartel DP (2004). Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol. Cell 14: 787-799.
    • (2004) Mol. Cell , vol.14 , pp. 787-799
    • Jones-Rhoades, M.W.1    Bartel, D.P.2
  • 16
    • 78651511540 scopus 로고    scopus 로고
    • miR-29b is activated during neuronal maturation and targets BH3-only genes to restrict apoptosis
    • Kole AJ, Swahari V, Hammond SM and Deshmukh M (2011). miR-29b is activated during neuronal maturation and targets BH3-only genes to restrict apoptosis. Genes Dev. 25: 125-130.
    • (2011) Genes Dev. , vol.25 , pp. 125-130
    • Kole, A.J.1    Swahari, V.2    Hammond, S.M.3    Deshmukh, M.4
  • 17
    • 78651293534 scopus 로고    scopus 로고
    • miRBase: Integrating microRNA annotation and deep-sequencing data
    • Kozomara A and Griffiths-Jones S (2011). miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 39: D152-D157.
    • (2011) Nucleic Acids Res. , vol.39
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 18
    • 84892973459 scopus 로고    scopus 로고
    • Effects of microRNA-24 on Bovine mammary epithelial cells proliferation and apoptosis at high temperature
    • Li HX, Wang ZY, Zhang Z, Zhou X, et al. (2010). Effects of microRNA-24 on Bovine mammary epithelial cells proliferation and apoptosis at high temperature. Sin. Agric. Sci. 43: 4732-4738.
    • (2010) Sin. Agric. Sci. , vol.43 , pp. 4732-4738
    • Li, H.X.1    Wang, Z.Y.2    Zhang, Z.3    Zhou, X.4
  • 19
    • 61449120270 scopus 로고    scopus 로고
    • MicroRNA transcriptome profiles during swine skeletal muscle development
    • McDaneld TG, Smith TPL, Doumit ME, Miles JR, et al. (2009). MicroRNA transcriptome profiles during swine skeletal muscle development. BMC Genomics 10: 77.
    • (2009) BMC Genomics , vol.10 , pp. 77
    • McDaneld, T.G.1    Smith, T.P.L.2    Doumit, M.E.3    Miles, J.R.4
  • 20
    • 57149110022 scopus 로고    scopus 로고
    • High-throughput stem-loop RT-qPCR miRNA expression profiling using minute amounts of input RNA
    • Mestdagh P, Feys T, Bernard N, Guenther S, et al. (2008). High-throughput stem-loop RT-qPCR miRNA expression profiling using minute amounts of input RNA. Nucleic Acids Res. 36: e143.
    • (2008) Nucleic Acids Res. , vol.36
    • Mestdagh, P.1    Feys, T.2    Bernard, N.3    Guenther, S.4
  • 21
    • 35349009932 scopus 로고    scopus 로고
    • Interferon modulation of cellular microRNAs as an antiviral mechanism
    • Pedersen IM, Cheng G, Wieland S, Volinia S, et al. (2007). Interferon modulation of cellular microRNAs as an antiviral mechanism. Nature 449: 919-922.
    • (2007) Nature , vol.449 , pp. 919-922
    • Pedersen, I.M.1    Cheng, G.2    Wieland, S.3    Volinia, S.4
  • 22
    • 40349094597 scopus 로고    scopus 로고
    • MicroRNA-373 induces expression of genes with complementary promoter sequences
    • Place RF, Li LC, Pookot D, Noonan EJ, et al. (2008). MicroRNA-373 induces expression of genes with complementary promoter sequences. Proc. Natl. Acad. Sci. U. S. A 105: 1608-1613.
    • (2008) Proc. Natl. Acad. Sci. U. S. A , vol.105 , pp. 1608-1613
    • Place, R.F.1    Li, L.C.2    Pookot, D.3    Noonan, E.J.4
  • 23
    • 46249092601 scopus 로고    scopus 로고
    • Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites
    • Sandberg R, Neilson JR, Sarma A, Sharp PA, et al. (2008). Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites. Science 320: 1643-1647.
    • (2008) Science , vol.320 , pp. 1643-1647
    • Sandberg, R.1    Neilson, J.R.2    Sarma, A.3    Sharp, P.A.4
  • 24
    • 16244398080 scopus 로고    scopus 로고
    • Specific effects of microRNAs on the plant transcriptome
    • Schwab R, Palatnik JF, Riester M, Schommer C, et al. (2005). Specific effects of microRNAs on the plant transcriptome. Dev. Cell 8: 517-527.
    • (2005) Dev. Cell , vol.8 , pp. 517-527
    • Schwab, R.1    Palatnik, J.F.2    Riester, M.3    Schommer, C.4
  • 25
    • 80052492895 scopus 로고    scopus 로고
    • Characterization of microRNAs from sheep (Ovis aries) using computational and experimental analyses
    • Sheng X, Song X, Yu Y, Niu L, et al. (2011). Characterization of microRNAs from sheep (Ovis aries) using computational and experimental analyses. Mol. Biol. Rep. 38: 3161-3171.
    • (2011) Mol. Biol. Rep. , vol.38 , pp. 3161-3171
    • Sheng, X.1    Song, X.2    Yu, Y.3    Niu, L.4
  • 26
    • 61449097694 scopus 로고    scopus 로고
    • The role of microRNA in tumorigenesis: Key players or innocent bystanders
    • Sini RA, Trink B and Nissan A (2009). The role of microRNA in tumorigenesis: key players or innocent bystanders. J. Surg. Oncol. 99: 135-136.
    • (2009) J. Surg. Oncol. , vol.99 , pp. 135-136
    • Sini, R.A.1    Trink, B.2    Nissan, A.3
  • 27
    • 77954385461 scopus 로고    scopus 로고
    • MicroRNAs 1, 133, and 206: Critical factors of skeletal and cardiac muscle development, function, and disease
    • Townley-Tilson WH, Callis TE and Wang D (2010). MicroRNAs 1, 133, and 206: critical factors of skeletal and cardiac muscle development, function, and disease. Int. J. Biochem. Cell Biol. 42: 1252-1255.
    • (2010) Int. J. Biochem. Cell Biol. , vol.42 , pp. 1252-1255
    • Townley-Tilson, W.H.1    Callis, T.E.2    Wang, D.3
  • 28
    • 36749026906 scopus 로고    scopus 로고
    • Switching from repression to activation: MicroRNAs can up-regulate translation
    • Vasudevan S, Tong Y and Steitz JA (2007). Switching from repression to activation: microRNAs can up-regulate translation. Science 318: 1931-1934.
    • (2007) Science , vol.318 , pp. 1931-1934
    • Vasudevan, S.1    Tong, Y.2    Steitz, J.A.3
  • 29
    • 82255183273 scopus 로고    scopus 로고
    • MicroRNAs miR-27a and miR-143 Regulate Porcine Adipocyte Lipid Metabolism
    • Wang T, Li M, Guan J, Li P, et al. (2011). MicroRNAs miR-27a and miR-143 Regulate Porcine Adipocyte Lipid Metabolism. Int. J. Mol. Sci. 12: 7950-7959.
    • (2011) Int. J. Mol. Sci. , vol.12 , pp. 7950-7959
    • Wang, T.1    Li, M.2    Guan, J.3    Li, P.4
  • 30
    • 83755207256 scopus 로고    scopus 로고
    • Identification and characterization of microRNA from chicken adipose tissue and skeletal muscle
    • Wang XG, Yu JF, Zhang Y, Gong DQ, et al. (2012). Identification and characterization of microRNA from chicken adipose tissue and skeletal muscle. Poult. Sci. 91: 139-149.
    • (2012) Poult. Sci. , vol.91 , pp. 139-149
    • Wang, X.G.1    Yu, J.F.2    Zhang, Y.3    Gong, D.Q.4
  • 31
    • 67649885497 scopus 로고    scopus 로고
    • Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust
    • Wei Y, Chen S, Yang P, Ma Z, et al. (2009). Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust. Genome Biol,. 10: R6.
    • (2009) Genome Biol,. , vol.10
    • Wei, Y.1    Chen, S.2    Yang, P.3    Ma, Z.4
  • 32
    • 26944495173 scopus 로고    scopus 로고
    • MicroRNA function in animal development
    • Wienholds E and Plasterk RH (2005). MicroRNA function in animal development. FEBS Lett. 579: 5911-5922.
    • (2005) FEBS Lett. , vol.579 , pp. 5911-5922
    • Wienholds, E.1    Plasterk, R.H.2
  • 33
    • 80054053675 scopus 로고    scopus 로고
    • MiR-143 enhances adipogenic differentiation of 3T3-L1 cells through targeting the coding region of mouse pleiotrophin
    • Yi C, Xie WD, Li F, Lv Q, et al. (2011). MiR-143 enhances adipogenic differentiation of 3T3-L1 cells through targeting the coding region of mouse pleiotrophin. FEBS Lett. 585: 3303-3309.
    • (2011) FEBS Lett. , vol.585 , pp. 3303-3309
    • Yi, C.1    Xie, W.D.2    Li, F.3    Lv, Q.4
  • 34
    • 34147153781 scopus 로고    scopus 로고
    • Dysregulation of cardiogenesis, cardiac conduction, and cell cycle in mice lacking miRNA-1-2
    • Zhao Y, Ransom JF, Li A, Vedantham V, et al. (2007). Dysregulation of cardiogenesis, cardiac conduction, and cell cycle in mice lacking miRNA-1-2. Cell 129: 303-317.
    • (2007) Cell , vol.129 , pp. 303-317
    • Zhao, Y.1    Ransom, J.F.2    Li, A.3    Vedantham, V.4
  • 35
    • 77956487601 scopus 로고    scopus 로고
    • MicroRNA expression profiles of porcine skeletal muscle
    • Zhou B, Liu HL, Shi FX and Wang JY (2010). MicroRNA expression profiles of porcine skeletal muscle. Anim. Genet. 41: 499-508.
    • (2010) Anim. Genet. , vol.41 , pp. 499-508
    • Zhou, B.1    Liu, H.L.2    Shi, F.X.3    Wang, J.Y.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.