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Volumn 6, Issue 1, 2011, Pages

Discovery of porcine microRNAs in multiple tissues by a solexa deep sequencing approach

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; TRANSCRIPTOME;

EID: 79551564464     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0016235     Document Type: Article
Times cited : (61)

References (50)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 2
    • 0027751663 scopus 로고
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • Lee RC, Feinbaum RL, Ambros V (1993) The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75: 843-854.
    • (1993) Cell , vol.75 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 3
    • 0034708122 scopus 로고    scopus 로고
    • The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
    • Reinhart BJ, Slack FJ, Basson M, Pasquinelli AE, Bettinger JC, et al. (2000) The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 403: 901-906.
    • (2000) Nature , vol.403 , pp. 901-906
    • Reinhart, B.J.1    Slack, F.J.2    Basson, M.3    Pasquinelli, A.E.4    Bettinger, J.C.5
  • 4
    • 0034597777 scopus 로고    scopus 로고
    • Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA
    • Pasquinelli AE, Reinhart BJ, Slack F, Martindale MQ, Kuroda MI, et al. (2000) Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature 408: 86-89.
    • (2000) Nature , vol.408 , pp. 86-89
    • Pasquinelli, A.E.1    Reinhart, B.J.2    Slack, F.3    Martindale, M.Q.4    Kuroda, M.I.5
  • 5
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 6
    • 0038299558 scopus 로고    scopus 로고
    • Role of microRNAs in plant and animal development
    • Carrington JC, Ambros V (2003) Role of microRNAs in plant and animal development. Science 301: 336-338.
    • (2003) Science , vol.301 , pp. 336-338
    • Carrington, J.C.1    Ambros, V.2
  • 7
    • 33645119514 scopus 로고    scopus 로고
    • MicroRNAs direct rapid deadenylation of mRNA
    • Wu L, Fan J, Belasco JG (2006) MicroRNAs direct rapid deadenylation of mRNA. Proc Natl Acad Sci U S A 103: 4034-4039.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 4034-4039
    • Wu, L.1    Fan, J.2    Belasco, J.G.3
  • 8
    • 2142654329 scopus 로고    scopus 로고
    • MicroRNA-directed cleavage of HOXB8 mRNA
    • Yekta S, Shih IH, Bartel DP (2004) MicroRNA-directed cleavage of HOXB8 mRNA. Science 304: 594-596.
    • (2004) Science , vol.304 , pp. 594-596
    • Yekta, S.1    Shih, I.H.2    Bartel, D.P.3
  • 9
    • 0141843656 scopus 로고    scopus 로고
    • The nuclear RNase III Drosha initiates microRNA processing
    • Lee Y, Ahn C, Han J, Choi H, Kim J, et al. (2003) The nuclear RNase III Drosha initiates microRNA processing. Nature 425: 415-419.
    • (2003) Nature , vol.425 , pp. 415-419
    • Lee, Y.1    Ahn, C.2    Han, J.3    Choi, H.4    Kim, J.5
  • 10
    • 8144225486 scopus 로고    scopus 로고
    • MicroRNA genes are transcribed by RNA polymerase II
    • Lee Y, Kim M, Han J, Yeom KH, Lee S, et al. (2004) MicroRNA genes are transcribed by RNA polymerase II. Embo J 23: 4051-4060.
    • (2004) Embo J , vol.23 , pp. 4051-4060
    • Lee, Y.1    Kim, M.2    Han, J.3    Yeom, K.H.4    Lee, S.5
  • 12
    • 0037418839 scopus 로고    scopus 로고
    • Bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila
    • Brennecke J, Hipfner DR, Stark A, Russell RB, Cohen SM (2003) bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila. Cell 113: 25-36.
    • (2003) Cell , vol.113 , pp. 25-36
    • Brennecke, J.1    Hipfner, D.R.2    Stark, A.3    Russell, R.B.4    Cohen, S.M.5
  • 14
    • 58149085504 scopus 로고    scopus 로고
    • MicroRNA control in the immune system: Basic principles
    • Xiao C, Rajewsky K (2009) MicroRNA control in the immune system: basic principles. Cell 136: 26-36.
    • (2009) Cell , vol.136 , pp. 26-36
    • Xiao, C.1    Rajewsky, K.2
  • 16
    • 77951701375 scopus 로고    scopus 로고
    • Henrion-Caude A microRNAs in diseases: From candidate to modifier genes
    • Bandiera S, Hatem E, Lyonnet S, Henrion-Caude A microRNAs in diseases: from candidate to modifier genes. Clin Genet 77: 306-313.
    • Clin Genet , vol.77 , pp. 306-313
    • Bandiera, S.1    Hatem, E.2    Lyonnet, S.3
  • 17
    • 0345818258 scopus 로고    scopus 로고
    • MicroRNAs and cancer
    • McManus MT (2003) MicroRNAs and cancer. Semin Cancer Biol 13: 253-258.
    • (2003) Semin Cancer Biol , vol.13 , pp. 253-258
    • McManus, M.T.1
  • 18
    • 0036544755 scopus 로고    scopus 로고
    • Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation
    • Lai EC (2002) Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation. Nat Genet 30: 363-364.
    • (2002) Nat Genet , vol.30 , pp. 363-364
    • Lai, E.C.1
  • 19
    • 77953563697 scopus 로고    scopus 로고
    • The code within the code: MicroRNAs target coding regions
    • Forman JJ, Coller HA. The code within the code: MicroRNAs target coding regions. Cell Cycle 9.
    • Cell Cycle , pp. 9
    • Forman, J.J.1    Coller, H.A.2
  • 20
    • 34547441263 scopus 로고    scopus 로고
    • Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5′ UTR as in the 3′ UTR
    • Lytle JR, Yario TA, Steitz JA (2007) Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5′ UTR as in the 3′ UTR. Proc Natl Acad Sci U S A 104: 9667-9672.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 9667-9672
    • Lytle, J.R.1    Yario, T.A.2    Steitz, J.A.3
  • 21
    • 36749026906 scopus 로고    scopus 로고
    • Switching from repression to activation: MicroRNAs can up-regulate translation
    • Vasudevan S, Tong Y, Steitz JA (2007) Switching from repression to activation: microRNAs can up-regulate translation. Science 318: 1931-1934.
    • (2007) Science , vol.318 , pp. 1931-1934
    • Vasudevan, S.1    Tong, Y.2    Steitz, J.A.3
  • 22
    • 33847068799 scopus 로고    scopus 로고
    • Advances in swine biomedical model genomics
    • Lunney JK (2007) Advances in swine biomedical model genomics. Int J Biol Sci 3: 179-184.
    • (2007) Int J Biol Sci , vol.3 , pp. 179-184
    • Lunney, J.K.1
  • 23
    • 75649121111 scopus 로고    scopus 로고
    • Proceedings of the Conference on Swine in Biomedical Research
    • Critser JK, Laughlin MH, Prather RS, Riley LK (2009) Proceedings of the Conference on Swine in Biomedical Research. Ilar J 50: 89-94.
    • (2009) Ilar J , vol.50 , pp. 89-94
    • Critser, J.K.1    Laughlin, M.H.2    Prather, R.S.3    Riley, L.K.4
  • 24
    • 23444460778 scopus 로고    scopus 로고
    • Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing
    • Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, et al. (2005) Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing. BMC Genomics 6: 70.
    • (2005) BMC Genomics , vol.6 , pp. 70
    • Wernersson, R.1    Schierup, M.H.2    Jorgensen, F.G.3    Gorodkin, J.4    Panitz, F.5
  • 25
    • 25144458451 scopus 로고    scopus 로고
    • Mapping and expression studies of the mir17-92 cluster on pig chromosome 11
    • Sawera M, Gorodkin J, Cirera S, Fredholm M (2005) Mapping and expression studies of the mir17-92 cluster on pig chromosome 11. Mamm Genome 16: 594-598.
    • (2005) Mamm Genome , vol.16 , pp. 594-598
    • Sawera, M.1    Gorodkin, J.2    Cirera, S.3    Fredholm, M.4
  • 26
    • 33847755965 scopus 로고    scopus 로고
    • New porcine microRNA genes found by homology search
    • Kim HJ, Cui XS, Kim EJ, Kim WJ, Kim NH (2006) New porcine microRNA genes found by homology search. Genome 49: 1283-1286.
    • (2006) Genome , vol.49 , pp. 1283-1286
    • Kim, H.J.1    Cui, X.S.2    Kim, E.J.3    Kim, W.J.4    Kim, N.H.5
  • 27
    • 56949102405 scopus 로고    scopus 로고
    • Identification and characterization of new microRNAs from pig
    • Kim J, Cho IS, Hong JS, Choi YK, Kim H, et al. (2008) Identification and characterization of new microRNAs from pig. Mamm Genome 19: 570-580.
    • (2008) Mamm Genome , vol.19 , pp. 570-580
    • Kim, J.1    Cho, I.S.2    Hong, J.S.3    Choi, Y.K.4    Kim, H.5
  • 28
    • 52449084200 scopus 로고    scopus 로고
    • Discovery of porcine microRNAs and profiling from skeletal muscle tissues during development
    • Huang TH, Zhu MJ, Li XY, Zhao SH (2008) Discovery of porcine microRNAs and profiling from skeletal muscle tissues during development. PLoS ONE 3: e3225.
    • (2008) PLoS ONE , vol.3
    • Huang, T.H.1    Zhu, M.J.2    Li, X.Y.3    Zhao, S.H.4
  • 30
    • 77951652207 scopus 로고    scopus 로고
    • Identification and characterization of microRNAs from porcine skeletal muscle
    • Xie SS, Huang TH, Shen Y, Li XY, Zhang XX, et al. Identification and characterization of microRNAs from porcine skeletal muscle. Anim Genet 41: 179-190.
    • Anim Genet , vol.41 , pp. 179-190
    • Xie, S.S.1    Huang, T.H.2    Shen, Y.3    Li, X.Y.4    Zhang, X.X.5
  • 31
    • 77956949572 scopus 로고    scopus 로고
    • Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    • Cho IS, Kim J, Seo HY, Lim DH, Hong JS, et al. Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue. Mol Biol Rep.
    • Mol Biol Rep.
    • Cho, I.S.1    Kim, J.2    Seo, H.Y.3    Lim, D.H.4    Hong, J.S.5
  • 33
    • 77951628592 scopus 로고    scopus 로고
    • MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    • Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, et al. MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing. Anim Genet 41: 159-168.
    • Anim Genet , vol.41 , pp. 159-168
    • Nielsen, M.1    Hansen, J.H.2    Hedegaard, J.3    Nielsen, R.O.4    Panitz, F.5
  • 36
    • 44849106063 scopus 로고    scopus 로고
    • A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    • Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, et al. (2008) A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach. Genome Res 18: 957-964.
    • (2008) Genome Res , vol.18 , pp. 957-964
    • Glazov, E.A.1    Cottee, P.A.2    Barris, W.C.3    Moore, R.J.4    Dalrymple, B.P.5
  • 38
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 40
    • 77955388999 scopus 로고    scopus 로고
    • MicroRNAome of Porcine Pre- and Postnatal Development
    • doi:10.1371/ journal.pone.0011541
    • Li M, Xia Y, Gu Y, Zhang K, Lang Q, et al. (2010) MicroRNAome of Porcine Pre- and Postnatal Development. PLoS ONE 5(7): e11541. doi:10.1371/ journal.pone.0011541.
    • (2010) PLoS ONE , vol.5 , Issue.7
    • Li, M.1    Xia, Y.2    Gu, Y.3    Zhang, K.4    Lang, Q.5
  • 41
    • 77957312307 scopus 로고    scopus 로고
    • Dynamic isomiR regulation in Drosophila development
    • Fernandez-Valverde SL, Taft RJ, Mattick JS (2010) Dynamic isomiR regulation in Drosophila development. RNA 16: 1881-8.
    • (2010) RNA , vol.16 , pp. 1881-1888
    • Fernandez-Valverde, S.L.1    Taft, R.J.2    Mattick, J.S.3
  • 42
    • 77952368550 scopus 로고    scopus 로고
    • Mammalian microRNAs: Experimental evaluation of novel and previously annotated genes
    • Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, et al. (2010) Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. Genes Dev 24: 992-1009.
    • (2010) Genes Dev , vol.24 , pp. 992-1009
    • Chiang, H.R.1    Schoenfeld, L.W.2    Ruby, J.G.3    Auyeung, V.C.4    Spies, N.5
  • 44
    • 33645075443 scopus 로고    scopus 로고
    • miR-122 regulation of lipid metabolism revealed by in vivo antisense targeting
    • Esau C, Davis S, Murray SF, Yu XX, Pandey SK, Pear M, et al. (2006) miR-122 regulation of lipid metabolism revealed by in vivo antisense targeting. Cell Metab 3: 87-98.
    • (2006) Cell Metab , vol.3 , pp. 87-98
    • Esau, C.1    Davis, S.2    Murray, S.F.3    Yu, X.X.4    Pandey, S.K.5    Pear, M.6
  • 45
    • 77953574309 scopus 로고    scopus 로고
    • Lethal-7 is down-regulated by the hepatitis B virus x protein and targets signal transducer and activator of transcription 3
    • Wang Y, Lu Y, Toh ST, Sung WK, Tan P, Chow P, Chung AY, Jooi LL, Lee CG (2001) Lethal-7 is down-regulated by the hepatitis B virus x protein and targets signal transducer and activator of transcription 3. J Hepatol 53: 57-66.
    • (2001) J Hepatol , vol.53 , pp. 57-66
    • Wang, Y.1    Lu, Y.2    Toh, S.T.3    Sung, W.K.4    Tan, P.5    Chow, P.6    Chung, A.Y.7    Jooi, L.L.8    Lee, C.G.9
  • 46
    • 70449571951 scopus 로고    scopus 로고
    • Comprehensive gene and microRNA expression profiling reveals a role for microRNAs in human liver development
    • Tzur G, Israel A, Levy A, Benjamin H, Meiri E, Shufaro Y, et al. (2009) Comprehensive gene and microRNA expression profiling reveals a role for microRNAs in human liver development. PLoS One 4: e7511.
    • (2009) PLoS One , vol.4
    • Tzur, G.1    Israel, A.2    Levy, A.3    Benjamin, H.4    Meiri, E.5    Shufaro, Y.6
  • 47
    • 73949133652 scopus 로고    scopus 로고
    • Epigallocatechin gallate up-regulation of miR-16 and induction of apoptosis in human cancer cells
    • Tsang WP, Kwok TT (2010) Epigallocatechin gallate up-regulation of miR-16 and induction of apoptosis in human cancer cells. J Nutr Biochem 21: 140-146.
    • (2010) J Nutr Biochem , vol.21 , pp. 140-146
    • Tsang, W.P.1    Kwok, T.T.2
  • 48
    • 11844283981 scopus 로고    scopus 로고
    • Stage-specific expression of microRNAs during Xenopus development
    • Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, et al. (2005) Stage-specific expression of microRNAs during Xenopus development. FEBS Lett 579: 318-324.
    • (2005) FEBS Lett , vol.579 , pp. 318-324
    • Watanabe, T.1    Takeda, A.2    Mise, K.3    Okuno, T.4    Suzuki, T.5
  • 49
    • 13944262052 scopus 로고    scopus 로고
    • A custom microarray platform for analysis of microRNA gene expression
    • Thomson JM, Parker J, Perou CM, Hammond SM (2004) A custom microarray platform for analysis of microRNA gene expression. Nat Methods 1: 47-53.
    • (2004) Nat Methods , vol.1 , pp. 47-53
    • Thomson, J.M.1    Parker, J.2    Perou, C.M.3    Hammond, S.M.4
  • 50
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing diferential expression in microarray experiments
    • Smyth GK (2004) Linear models and empirical Bayes methods for assessing diferential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol 3: 1-29.
    • (2004) Stat. Appl. Genet. Mol. Biol , vol.3 , pp. 1-29
    • Smyth, G.K.1


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