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Volumn 146, Issue 4, 2012, Pages 388-403

Identification of Taxus microRNAs and their targets with high-throughput sequencing and degradome analysis

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; ISOMERASE; MICRORNA; PLANT RNA; TAXA 4(5),11(12) DIENE SYNTHASE; TAXA-4(5),11(12)-DIENE SYNTHASE; TRANSCRIPTOME;

EID: 84869081672     PISSN: 00319317     EISSN: 13993054     Source Type: Journal    
DOI: 10.1111/j.1399-3054.2012.01668.x     Document Type: Article
Times cited : (88)

References (39)
  • 1
    • 43449091567 scopus 로고    scopus 로고
    • Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome
    • Addo-Quaye C, Eshoo TW, Bartel DP, Axtell MJ (2008) Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr Biol 18: 758-762
    • (2008) Curr Biol , vol.18 , pp. 758-762
    • Addo-Quaye, C.1    Eshoo, T.W.2    Bartel, D.P.3    Axtell, M.J.4
  • 2
    • 73249121905 scopus 로고    scopus 로고
    • Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome
    • Addo-Quaye C, Snyder JA, Park YB, Li YF, Sunkar R, Axtell MJ (2009) Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome. RNA 15: 2112-2121
    • (2009) RNA , vol.15 , pp. 2112-2121
    • Addo-Quaye, C.1    Snyder, J.A.2    Park, Y.B.3    Li, Y.F.4    Sunkar, R.5    Axtell, M.J.6
  • 3
    • 17444430392 scopus 로고    scopus 로고
    • microRNA directed phasing during trans-acting siRNA biogenesis in plants
    • Allen E, Xie Z, Gustafson AM, Carrington JC (2005) microRNA directed phasing during trans-acting siRNA biogenesis in plants. Cell 121: 207-221
    • (2005) Cell , vol.121 , pp. 207-221
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Carrington, J.C.4
  • 4
    • 79955841150 scopus 로고    scopus 로고
    • Sequencing-based approaches reveal low ambient temperature-responsive and tissue-specific microRNAs in phalaenopsis orchid
    • An FM, Hsiao SR, Chan MT (2011) Sequencing-based approaches reveal low ambient temperature-responsive and tissue-specific microRNAs in phalaenopsis orchid. PLoS One 6: e18937
    • (2011) PLoS One , vol.6
    • An, F.M.1    Hsiao, S.R.2    Chan, M.T.3
  • 6
    • 80052418295 scopus 로고    scopus 로고
    • Cytosolic HSP90 cochaperones HOP and FKBP interact with freshly synthesized chloroplast preproteins of Arabidopsis
    • Fellerer C, Schweiger R, Schöngruber K, Soll J, Schwenkert S (2011) Cytosolic HSP90 cochaperones HOP and FKBP interact with freshly synthesized chloroplast preproteins of Arabidopsis. Mol Plant 4: 1133-1145
    • (2011) Mol Plant , vol.4 , pp. 1133-1145
    • Fellerer, C.1    Schweiger, R.2    Schöngruber, K.3    Soll, J.4    Schwenkert, S.5
  • 7
    • 33846904347 scopus 로고    scopus 로고
    • The miRNA156/157 recognition element in the 3' UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational inhibition in seedlings
    • Gandikota M, Birkenbihl RP, Hohmann S, Cardon GH, Saedler H, Huijser P (2007) The miRNA156/157 recognition element in the 3' UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational inhibition in seedlings. Plant J 49: 683-693
    • (2007) Plant J , vol.49 , pp. 683-693
    • Gandikota, M.1    Birkenbihl, R.P.2    Hohmann, S.3    Cardon, G.H.4    Saedler, H.5    Huijser, P.6
  • 9
    • 63849207321 scopus 로고    scopus 로고
    • Construction of parallel analysis of RNA ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome
    • German MA, Luo S, Schroth G, Meyers BC, Green PJ (2009) Construction of parallel analysis of RNA ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome. Nat Protoc 4: 356-362
    • (2009) Nat Protoc , vol.4 , pp. 356-362
    • German, M.A.1    Luo, S.2    Schroth, G.3    Meyers, B.C.4    Green, P.J.5
  • 11
    • 38849200942 scopus 로고    scopus 로고
    • Phylogenetic relationship within the genus Taxus inferred from protein-coding genes and non-protein-coding DNA sequences
    • Hao DC, Huang BL, Yang L (2008a) Phylogenetic relationship within the genus Taxus inferred from protein-coding genes and non-protein-coding DNA sequences. Biol Pharm Bull 31: 260-265
    • (2008) Biol Pharm Bull , vol.31 , pp. 260-265
    • Hao, D.C.1    Huang, B.L.2    Yang, L.3
  • 12
    • 56249103747 scopus 로고    scopus 로고
    • Interspecific relationships and origins of Taxaceae and Cephalotaxaceae revealed by partitioned Bayesian analyses of chloroplast and nuclear DNA sequences
    • Hao DC, Xiao PG, Huang B, Ge GB, Yang L (2008b) Interspecific relationships and origins of Taxaceae and Cephalotaxaceae revealed by partitioned Bayesian analyses of chloroplast and nuclear DNA sequences. Plant Syst Evol 276: 89-104
    • (2008) Plant Syst Evol , vol.276 , pp. 89-104
    • Hao, D.C.1    Xiao, P.G.2    Huang, B.3    Ge, G.B.4    Yang, L.5
  • 13
    • 79959472680 scopus 로고    scopus 로고
    • The first insight into the tissue specific taxus transcriptome via Illumina second generation sequencing
    • Hao DC, Ge G, Xiao PG, Zhang Y, Yang L (2011a) The first insight into the tissue specific taxus transcriptome via Illumina second generation sequencing. PLoS One 6: e21220
    • (2011) PLoS One , vol.6
    • Hao, D.C.1    Ge, G.2    Xiao, P.G.3    Zhang, Y.4    Yang, L.5
  • 14
    • 79952988820 scopus 로고    scopus 로고
    • The first insight into the Taxus genome via fosmid library construction and end sequencing
    • Hao DC, Yang L, Xiao PG (2011b) The first insight into the Taxus genome via fosmid library construction and end sequencing. Mol Genet Genomics 285: 197-205
    • (2011) Mol Genet Genomics , vol.285 , pp. 197-205
    • Hao, D.C.1    Yang, L.2    Xiao, P.G.3
  • 15
    • 84869079854 scopus 로고    scopus 로고
    • Research progress and trend analysis in biology and chemistry of Taxus medicinal resources
    • Hao DC, Xiao PG, Peng Y, Liu M, Huo L (2012) Research progress and trend analysis in biology and chemistry of Taxus medicinal resources. Acta Pharmacol Sin, in press
    • (2012) Acta Pharmacol Sin
    • Hao, D.C.1    Xiao, P.G.2    Peng, Y.3    Liu, M.4    Huo, L.5
  • 16
    • 84857195703 scopus 로고    scopus 로고
    • Cyclophilin 40 facilitates HSP90-mediated RISC assembly in plants
    • Iki T, Yoshikawa M, Meshi T, Ishikawa M (2011) Cyclophilin 40 facilitates HSP90-mediated RISC assembly in plants. EMBO J 31: 267-278
    • (2011) EMBO J , vol.31 , pp. 267-278
    • Iki, T.1    Yoshikawa, M.2    Meshi, T.3    Ishikawa, M.4
  • 18
    • 0035923612 scopus 로고    scopus 로고
    • Taxol biosynthesis: taxane 13 alpha-hydroxylase is a cytochrome P450-dependent monooxygenase
    • Jennewein S, Rithner CD, Williams RM, Croteau RB (2001) Taxol biosynthesis: taxane 13 alpha-hydroxylase is a cytochrome P450-dependent monooxygenase. Proc Natl Acad Sci USA 98: 13595-13600
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 13595-13600
    • Jennewein, S.1    Rithner, C.D.2    Williams, R.M.3    Croteau, R.B.4
  • 21
    • 66949145467 scopus 로고    scopus 로고
    • MicroRNA expression profiles in conventional and micropropagated strawberry (Fragaria x ananassa Duch.) plants
    • Li H, Zhang Z, Huang F, Chang L, Ma Y (2009a) MicroRNA expression profiles in conventional and micropropagated strawberry (Fragaria x ananassa Duch.) plants. Plant Cell Rep 28: 891-902
    • (2009) Plant Cell Rep , vol.28 , pp. 891-902
    • Li, H.1    Zhang, Z.2    Huang, F.3    Chang, L.4    Ma, Y.5
  • 24
    • 79960503618 scopus 로고    scopus 로고
    • Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica
    • Li B, Qin Y, Duan H, Yin W, Xia X (2011a) Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica. J Exp Bot 62: 3765-3779
    • (2011) J Exp Bot , vol.62 , pp. 3765-3779
    • Li, B.1    Qin, Y.2    Duan, H.3    Yin, W.4    Xia, X.5
  • 25
    • 79955802124 scopus 로고    scopus 로고
    • Evolution of MIR159/319 microRNA genes and their post-transcriptional regulatory link to siRNA pathways
    • Li Y, Li C, Ding G, Jin Y (2011b) Evolution of MIR159/319 microRNA genes and their post-transcriptional regulatory link to siRNA pathways. BMC Evol Biol 11: 122
    • (2011) BMC Evol Biol , vol.11 , pp. 122
    • Li, Y.1    Li, C.2    Ding, G.3    Jin, Y.4
  • 26
    • 77956297226 scopus 로고    scopus 로고
    • Identification of miRNA from Porphyra yezoensis by high-throughput sequencing and bioinformatics analysis
    • Liang C, Zhang X, Zou J, Xu D, Su F, Ye N (2010) Identification of miRNA from Porphyra yezoensis by high-throughput sequencing and bioinformatics analysis. PLoS One 5: e10698
    • (2010) PLoS One , vol.5
    • Liang, C.1    Zhang, X.2    Zou, J.3    Xu, D.4    Su, F.5    Ye, N.6
  • 27
    • 79956081784 scopus 로고    scopus 로고
    • High-throughput sequencing, characterization and detection of new and conserved cucumber miRNAs
    • Martínez G, Forment J, Llave C, Pallás V, Gómez G (2011) High-throughput sequencing, characterization and detection of new and conserved cucumber miRNAs. PLoS One 6: e19523
    • (2011) PLoS One , vol.6
    • Martínez, G.1    Forment, J.2    Llave, C.3    Pallás, V.4    Gómez, G.5
  • 28
    • 77953489252 scopus 로고    scopus 로고
    • Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
    • Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J (2010) Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis. Plant J 62: 960-976
    • (2010) Plant J , vol.62 , pp. 960-976
    • Pantaleo, V.1    Szittya, G.2    Moxon, S.3    Miozzi, L.4    Moulton, V.5    Dalmay, T.6    Burgyan, J.7
  • 30
    • 62549095240 scopus 로고    scopus 로고
    • High throughput sequencing technology reveals that the taxoid elicitor methyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis)
    • Qiu D, Pan X, Wilson IW, Li F, Liu M, Teng W, Zhang B (2009) High throughput sequencing technology reveals that the taxoid elicitor methyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis). Gene 436: 37-44
    • (2009) Gene , vol.436 , pp. 37-44
    • Qiu, D.1    Pan, X.2    Wilson, I.W.3    Li, F.4    Liu, M.5    Teng, W.6    Zhang, B.7
  • 32
    • 78650971549 scopus 로고    scopus 로고
    • Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
    • Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS (2011) Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing. BMC Plant Biol 11: 5
    • (2011) BMC Plant Biol , vol.11 , pp. 5
    • Song, Q.X.1    Liu, Y.F.2    Hu, X.Y.3    Zhang, W.K.4    Ma, B.5    Chen, S.Y.6    Zhang, J.S.7
  • 33
    • 60149086351 scopus 로고    scopus 로고
    • Origin, biogenesis, and activity of plant microRNAs
    • Voinnet O (2009) Origin, biogenesis, and activity of plant microRNAs. Cell 136: 669-687
    • (2009) Cell , vol.136 , pp. 669-687
    • Voinnet, O.1
  • 34
    • 0034610386 scopus 로고    scopus 로고
    • Taxol biosynthesis: molecular cloning of a benzoyl-CoA:taxane 2alpha-O-benzoyltransferase cDNA from taxus and functional expression in Escherichia coli
    • Walker K, Croteau R (2000) Taxol biosynthesis: molecular cloning of a benzoyl-CoA:taxane 2alpha-O-benzoyltransferase cDNA from taxus and functional expression in Escherichia coli. Proc Natl Acad Sci USA 97: 13591-13596
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 13591-13596
    • Walker, K.1    Croteau, R.2
  • 35
    • 68749100821 scopus 로고    scopus 로고
    • The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis
    • Wu G, Park MY, Conway SR, Wang JW, Weigel D, Poethig RS (2009) The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis. Cell 138: 750-759
    • (2009) Cell , vol.138 , pp. 750-759
    • Wu, G.1    Park, M.Y.2    Conway, S.R.3    Wang, J.W.4    Weigel, D.5    Poethig, R.S.6
  • 36
    • 79952486339 scopus 로고    scopus 로고
    • Transcriptome analysis of Taxus cuspidata needles based on 454 pyrosequencing
    • Wu Q, Sun C, Luo H, Li Y, Niu Y, Sun Y, Lu A, Chen S (2011) Transcriptome analysis of Taxus cuspidata needles based on 454 pyrosequencing. Planta Med 77: 394-400
    • (2011) Planta Med , vol.77 , pp. 394-400
    • Wu, Q.1    Sun, C.2    Luo, H.3    Li, Y.4    Niu, Y.5    Sun, Y.6    Lu, A.7    Chen, S.8
  • 37
    • 39549115890 scopus 로고    scopus 로고
    • Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
    • Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q (2007) Cloning and characterization of microRNAs from wheat (Triticum aestivum L.). Genome Biol 8: R96
    • (2007) Genome Biol , vol.8
    • Yao, Y.1    Guo, G.2    Ni, Z.3    Sunkar, R.4    Du, J.5    Zhu, J.K.6    Sun, Q.7
  • 38
    • 83255185090 scopus 로고    scopus 로고
    • Genome-wide identification of Medicago truncatula microRNAs and their targets reveals their differential regulation by heavy metal
    • Zhou ZS, Zeng HQ, Liu ZP, Yang ZM (2012) Genome-wide identification of Medicago truncatula microRNAs and their targets reveals their differential regulation by heavy metal. Plant Cell Environ 35: 86-99
    • (2012) Plant Cell Environ , vol.35 , pp. 86-99
    • Zhou, Z.S.1    Zeng, H.Q.2    Liu, Z.P.3    Yang, Z.M.4
  • 39
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1


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