메뉴 건너뛰기




Volumn 7, Issue 7, 2011, Pages 1016-1026

Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein Cattle

Author keywords

Dairy cattle; MicroRNA; Ovary; Testis

Indexed keywords

BOS; BOVINAE; MAMMALIA;

EID: 80052765128     PISSN: 14492288     EISSN: None     Source Type: Journal    
DOI: 10.7150/ijbs.7.1016     Document Type: Article
Times cited : (153)

References (51)
  • 1
    • 0038299558 scopus 로고    scopus 로고
    • Role of microRNAs in plant and animal development
    • Carrington JC, Ambros V. Role of microRNAs in plant and animal development. Science. 2003; 301:336-8.
    • (2003) Science , vol.301 , pp. 336-338
    • Carrington, J.C.1    Ambros, V.2
  • 2
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, Biogenesis, Mechanism, and Function
    • Bartel DP. MicroRNAs: Genomics, Biogenesis, Mechanism, and Function. Cell. 2004; 116: 281-97.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 3
    • 36749026906 scopus 로고    scopus 로고
    • Switching from repression to activation: MicroRNAs can up-regulate translation
    • Vasudevan S, Tong YC, Steitz JA. Switching from repression to activation: MicroRNAs can up-regulate translation. Science.2007; 318: 1931-4.
    • (2007) Science , vol.318 , pp. 1931-1934
    • Vasudevan, S.1    Tong, Y.C.2    Steitz, J.A.3
  • 4
    • 0037423845 scopus 로고    scopus 로고
    • Vertebrate microRNA genes
    • Lim LP, Glasner ME, Yekta S, et al. Vertebrate microRNA genes. Science. 2003; 299:1540.
    • (2003) Science , vol.299 , pp. 1540
    • Lim, L.P.1    Glasner, M.E.2    Yekta, S.3
  • 5
    • 0346094457 scopus 로고    scopus 로고
    • Prediction of mammalian microRNA targets
    • Lewis BP, Shih IH, Jones-Rhoades MW, et al. Prediction of mammalian microRNA targets. Cell. 2003; 115:787-98.
    • (2003) Cell , vol.115 , pp. 787-798
    • Lewis, B.P.1    Shih, I.H.2    Jones-Rhoades, M.W.3
  • 6
    • 20944450160 scopus 로고    scopus 로고
    • Combinatorial microRNA target predictions
    • Krek A, Grun D, Poy MN, et al. Combinatorial microRNA target predictions. Nat Genet. 2005; 37:495-500.
    • (2005) Nat Genet , vol.37 , pp. 495-500
    • Krek, A.1    Grun, D.2    Poy, M.N.3
  • 7
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros V. The functions of animal microRNAs. Nature. 2004; 431:350-5.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 8
    • 28044471565 scopus 로고    scopus 로고
    • MicroRNA functions in animal development and human disease
    • Alvarez-Garcia I and Miska EA. MicroRNA functions in animal development and human disease. Development. 2005; 132: 4653-62.
    • (2005) Development , vol.132 , pp. 4653-4662
    • Alvarez-Garcia, I.1    Miska, E.A.2
  • 9
    • 33748928159 scopus 로고    scopus 로고
    • The diverse functions of MicroRNAs in animal development and disease
    • Kloosterman WP and Plasterk RHA. The diverse functions of MicroRNAs in animal development and disease. Developmental Cell. 2006; 11: 441-50.
    • (2006) Developmental Cell , vol.11 , pp. 441-450
    • Kloosterman, W.P.1    Plasterk, R.H.A.2
  • 10
    • 34248178219 scopus 로고    scopus 로고
    • Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    • Coutinho LL, Matukumalli LK, Sonstegard TS, et al. Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues. Physiol Genomics. 2007; 29:35-43.
    • (2007) Physiol Genomics , vol.29 , pp. 35-43
    • Coutinho, L.L.1    Matukumalli, L.K.2    Sonstegard, T.S.3
  • 11
    • 58549117346 scopus 로고    scopus 로고
    • Annotation of 390 bo-vine miRNA genes by sequence similarity with other species
    • Strozzi F, Mazza R, Malinverni R, et al. Annotation of 390 bo-vine miRNA genes by sequence similarity with other species. Anim Genet. 2009; 40:125.
    • (2009) Anim Genet , vol.40 , pp. 125
    • Strozzi, F.1    Mazza, R.2    Malinverni, R.3
  • 12
    • 70449358909 scopus 로고    scopus 로고
    • Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    • Jin W, Grant JR, Stothard P, et al. Characterization of bovine miRNAs by sequencing and bioinformatics analysis. BMC Mol Biol. 2009; 10:90.
    • (2009) BMC Mol Biol , vol.10 , pp. 90
    • Jin, W.1    Grant, J.R.2    Stothard, P.3
  • 15
    • 84871912874 scopus 로고    scopus 로고
    • [Internet]
    • [Internet] The miRBase Database. http://microrna.sanger.ac.uk
    • The MiRBase Database
  • 16
    • 77749292220 scopus 로고    scopus 로고
    • MicroRNAs in the Testis: Building up male fertility
    • Papaioannou MD and Nef S. MicroRNAs in the Testis: Building up male fertility. J Andro. 2010; 31:26-33.
    • (2010) J Andro , vol.31 , pp. 26-33
    • Papaioannou, M.D.1    Nef, S.2
  • 17
    • 65549139243 scopus 로고    scopus 로고
    • MicroRNA in the ovary and female reproductive tract
    • Carletti M Z and Christenson LK. MicroRNA in the ovary and female reproductive tract. J Anim Sci. 2009; 87:E29-E38.
    • (2009) J Anim Sci , vol.87
    • Carletti, M.Z.1    Christenson, L.K.2
  • 18
    • 77950116912 scopus 로고    scopus 로고
    • The role of mi-croRNAs in endometriosis and associated reproductive condi-tions
    • Ohlsson Teague EMC, Print CG and Hull ML. The role of mi-croRNAs in endometriosis and associated reproductive condi-tions. Human Reproduction Update. 2010; 16:142-65.
    • (2010) Human Reproduction Update , vol.16 , pp. 142-165
    • Ohlsson Teague, E.M.C.1    Print, C.G.2    Hull, M.L.3
  • 19
    • 77951621301 scopus 로고    scopus 로고
    • The genome sequence of tau-rine cattle: A window to ruminant biology and evolution
    • Bovine Genome Sequencing and Analysis Consortium
    • Bovine Genome Sequencing and Analysis Consortium, Elsik CG, Tellam RL, Worley KC, et al. The genome sequence of tau-rine cattle: a window to ruminant biology and evolution. Sci-ence. 2009; 324:522-8.
    • (2009) Sci-ence , vol.324 , pp. 522-528
    • Elsik, C.G.1    Tellam, R.L.2    Worley, K.C.3
  • 20
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: Short Oligonucleotide Alignment Program
    • Li R, Li Y, Kristiansen K, et al. SOAP: Short Oligonucleotide Alignment Program. Bioinformatics. 2008; 24:713-4.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3
  • 21
    • 85038491304 scopus 로고    scopus 로고
    • [Internet]
    • [Internet] RNAfold. http://www.tbi.univie.ac.at/~ivo/RNA/RNAfold.html
    • RNAfold
  • 22
    • 85038504832 scopus 로고    scopus 로고
    • [Internet] MIREAP
    • [Internet] MIREAP. http://https//sourceforge.net/projects/mireap/
  • 23
    • 24644476482 scopus 로고    scopus 로고
    • MicroRNA identification based on sequence and structure alignment
    • Wang X, Zhang J, Li F, et al. MicroRNA identification based on sequence and structure alignment. Bioinformatics. 2005; 21:3610-4.
    • (2005) Bioinformatics , vol.21 , pp. 3610-3614
    • Wang, X.1    Zhang, J.2    Li, F.3
  • 24
    • 34547596338 scopus 로고    scopus 로고
    • MiPred: Classification of real and pseudo microRNA precursors using random forest prediction model with combined features
    • Jiang P, Wu H, Wang W, et al. MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features. Nucleic Acids Res. 2007; 35:W339-W344.
    • (2007) Nucleic Acids Res , vol.35
    • Jiang, P.1    Wu, H.2    Wang, W.3
  • 25
    • 16344389891 scopus 로고    scopus 로고
    • PermutMatrix: A graphical envi-ronment to arrange gene expression profiles in optimal linear order
    • Caraux G and Pinlonche S. PermutMatrix: a graphical envi-ronment to arrange gene expression profiles in optimal linear order. Bioinformatic.2005, 21:1280-1.
    • (2005) Bioinformatic , vol.21 , pp. 1280-1281
    • Caraux, G.1    Pinlonche, S.2
  • 26
    • 33750733621 scopus 로고    scopus 로고
    • A PCR-based method for detection and quantification of small RNAs
    • Ro S, Park C, Jin J, et al. A PCR-based method for detection and quantification of small RNAs. Biochem Biophys Res Commun. 2006;351: 756-63.
    • (2006) Biochem Biophys Res Commun , vol.351 , pp. 756-763
    • Ro, S.1    Park, C.2    Jin, J.3
  • 27
    • 25444475785 scopus 로고    scopus 로고
    • A standard curve based method for relative real time PCR data processing
    • Larionov A, Krauseand A and Miller W. A standard curve based method for relative real time PCR data processing. BMC Bioinform. 2005; 6: 62-78.
    • (2005) BMC Bioinform , vol.6 , pp. 62-78
    • Larionov, A.1    Krauseand, A.2    Miller, W.3
  • 28
    • 63449118489 scopus 로고    scopus 로고
    • Mitogen-activated protein kinases in male reproductive function
    • Li MWM, Mruk DD and Cheng CY. Mitogen-activated protein kinases in male reproductive function. Trends Mol Med. 2009;15: 159-68.
    • (2009) Trends Mol Med , vol.15 , pp. 159-168
    • Li, M.W.M.1    Mruk, D.D.2    Cheng, C.Y.3
  • 29
    • 79955565762 scopus 로고    scopus 로고
    • β-Catenin is essential for Müllerian duct regression during male sexual differentia-tion
    • epub
    • Kobayashi A, Stewart CA, Wang Y, et al. β-Catenin is essential for Müllerian duct regression during male sexual differentia-tion. Development. 2011; epub.
    • (2011) Development
    • Kobayashi, A.1    Stewart, C.A.2    Wang, Y.3
  • 30
    • 74249099972 scopus 로고    scopus 로고
    • TGF-ß Sma/Mab Signaling Mutations Uncouple Reproductive Aging from Somatic Aging
    • Luo S, Shaw WM, Ashraf J, et al. TGF-ß Sma/Mab Signaling Mutations Uncouple Reproductive Aging from Somatic Aging. PLoS Genet.2009; 5: e1000789.
    • (2009) PLoS Genet , vol.5
    • Luo, S.1    Shaw, W.M.2    Ashraf, J.3
  • 31
    • 77952583480 scopus 로고    scopus 로고
    • TGFbeta signaling in male germ cells regulates gonocyte quiescence and fertility in mice
    • Moreno SG, Attali M, Allemand I, et al. TGFbeta signaling in male germ cells regulates gonocyte quiescence and fertility in mice. Dev Biol. 2010; 342:74-84.
    • (2010) Dev Biol , vol.342 , pp. 74-84
    • Moreno, S.G.1    Attali, M.2    Allemand, I.3
  • 32
    • 77954861312 scopus 로고    scopus 로고
    • Cloning and analysis of fetal ovary mi-croRNAs in cattle
    • Tripurani SK, et al. Cloning and analysis of fetal ovary mi-croRNAs in cattle. Anim Reprod Sci.2010; 120:16-22.
    • (2010) Anim Reprod Sci , vol.120 , pp. 16-22
    • Tripurani, S.K.1
  • 33
    • 58149307977 scopus 로고    scopus 로고
    • MicroRNA (miRNA) cloning analysis reveals sex differences in miRNA expression profiles between adult mouse testis and ovary
    • Mishima T, Takizawa T, Luo SS, et al. MicroRNA (miRNA) cloning analysis reveals sex differences in miRNA expression profiles between adult mouse testis and ovary. Reproduction. 2008; 36: 811-22.
    • (2008) Reproduction , vol.36 , pp. 811-822
    • Mishima, T.1    Takizawa, T.2    Luo, S.S.3
  • 34
    • 33847317017 scopus 로고    scopus 로고
    • Redirection of silencing targets by adenosine-to-inosine editing of miRNAs
    • Kawahara Y, Zinshteyn B, Sethupathy P, et al. Redirection of silencing targets by adenosine-to-inosine editing of miRNAs. Science. 2007; 315:1137-40.
    • (2007) Science , vol.315 , pp. 1137-1140
    • Kawahara, Y.1    Zinshteyn, B.2    Sethupathy, P.3
  • 35
    • 34250877841 scopus 로고    scopus 로고
    • A mammalian mi-croRNA expression atlas based on small RNA library sequenc-ing
    • Landgraf P, Rusu M, Sheridan R, et al. A mammalian mi-croRNA expression atlas based on small RNA library sequenc-ing. Cell. 2007; 129: 1401-14.
    • (2007) Cell , vol.129 , pp. 1401-1414
    • Landgraf, P.1    Rusu, M.2    Sheridan, R.3
  • 36
    • 51749093103 scopus 로고    scopus 로고
    • Degradation of microRNAs by a family of exoribonucleases in Arabidopsis
    • Ramachandran V, Chen X. Degradation of microRNAs by a family of exoribonucleases in Arabidopsis. Science. 2008; 321:1490-2.
    • (2008) Science , vol.321 , pp. 1490-1492
    • Ramachandran, V.1    Chen, X.2
  • 37
    • 34147149312 scopus 로고    scopus 로고
    • Developmental view of microRNA function
    • Zhao Y and Srivastava DA. Developmental view of microRNA function. Trends Biochem Sci. 2007; 32:189-97.
    • (2007) Trends Biochem Sci , vol.32 , pp. 189-197
    • Zhao, Y.1    Srivastava, D.A.2
  • 38
    • 63049087072 scopus 로고    scopus 로고
    • Rapid evolution of mammalian X-linked testis microRNAs
    • Guo XJ, Su B, Zhou ZM, et al. Rapid evolution of mammalian X-linked testis microRNAs. BMC Genomics. 2009; 10:97.
    • (2009) BMC Genomics , vol.10 , pp. 97
    • Guo, X.J.1    Su, B.2    Zhou, Z.M.3
  • 39
    • 34248196026 scopus 로고    scopus 로고
    • Rapid evolution of an X-linked microRNA cluster in primates
    • Zhang R, Peng Y, Wang W, et al. Rapid evolution of an X-linked microRNA cluster in primates. Genome Res. 2007; 17: 612-7.
    • (2007) Genome Res , vol.17 , pp. 612-617
    • Zhang, R.1    Peng, Y.2    Wang, W.3
  • 40
    • 70449358909 scopus 로고    scopus 로고
    • Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    • Jin W, Grant J, Stothard P, et al. Characterization of bovine miRNAs by sequencing and bioinformatics analysis. BMC Mol Bio. 2009; 10:90.
    • (2009) BMC Mol Bio , vol.10 , pp. 90
    • Jin, W.1    Grant, J.2    Stothard, P.3
  • 41
    • 33645124258 scopus 로고    scopus 로고
    • Zebrafish MiR-430 pro-motes deadenylation and clearance of maternal mRNAs
    • Giraldez AJ, Mishima Y, Rihe J, et al. Zebrafish MiR-430 pro-motes deadenylation and clearance of maternal mRNAs. Sci-ence. 2006; 312:75-9.
    • (2006) Sci-ence , vol.312 , pp. 75-79
    • Giraldez, A.J.1    Mishima, Y.2    Rihe, J.3
  • 42
    • 33947306584 scopus 로고    scopus 로고
    • Critical roles for Dicer in the female germline
    • Murchison EP, Stein P, Xuan Z, et al. Critical roles for Dicer in the female germline. Genes Dev. 2007; 21:682-93.
    • (2007) Genes Dev , vol.21 , pp. 682-693
    • Murchison, E.P.1    Stein, P.2    Xuan, Z.3
  • 43
    • 33947327049 scopus 로고    scopus 로고
    • Maternal microRNAs are essential for mouse zygotic development
    • Tang F, Kaneda M, O'Carroll D, et al. Maternal microRNAs are essential for mouse zygotic development. Genes Dev. 2007; 21:644-8.
    • (2007) Genes Dev , vol.21 , pp. 644-648
    • Tang, F.1    Kaneda, M.2    O'Carroll, D.3
  • 44
    • 75749098853 scopus 로고    scopus 로고
    • MicroRNA function is globally suppressed in mouse oocytes and early embryos
    • Suh N, Baehner L, Moltzahn F, et al. MicroRNA function is globally suppressed in mouse oocytes and early embryos. Curr Biol. 2010;20: 271-7.
    • (2010) Curr Biol , vol.20 , pp. 271-277
    • Suh, N.1    Baehner, L.2    Moltzahn, F.3
  • 45
    • 36248943017 scopus 로고    scopus 로고
    • Cloning and expression profiling of small RNAs expressed in the mouse ovary
    • Ro S, Song R, Park C, et al. Cloning and expression profiling of small RNAs expressed in the mouse ovary. RNA. 2007; 13: 2366-80.
    • (2007) RNA , vol.13 , pp. 2366-2380
    • Ro, S.1    Song, R.2    Park, C.3
  • 46
    • 77955404450 scopus 로고    scopus 로고
    • MicroRNA 21 blocks apoptosis in mouse periovulatory granulosa cells
    • Carletti MZ, Fiedler SD, Christenson LK. MicroRNA 21 blocks apoptosis in mouse periovulatory granulosa cells. Biol Reprod. 2010; 83:286-95.
    • (2010) Biol Reprod , vol.83 , pp. 286-295
    • Carletti, M.Z.1    Fiedler, S.D.2    Christenson, L.K.3
  • 47
    • 33644499134 scopus 로고    scopus 로고
    • Cell type-specific signatures of microRNAs on target mRNA expression
    • Sood P, Krek A, Zavolan M, et al. Cell type-specific signatures of microRNAs on target mRNA expression. Proc Natl Acad Sci USA. 2006; 103:2746-51.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 2746-2751
    • Sood, P.1    Krek, A.2    Zavolan, M.3
  • 48
    • 80052736411 scopus 로고    scopus 로고
    • MicroRNA control of ovarian function
    • Christenson LK. MicroRNA control of ovarian function. Anim Reprod. 2010; 7:129-33.
    • (2010) Anim Reprod , vol.7 , pp. 129-133
    • Christenson, L.K.1
  • 49
    • 42949179661 scopus 로고    scopus 로고
    • Impaired microRNA processing causes corpus luteum insufficiency and infertility in mice
    • Otsuka M, Zheng M, Hayashi M, et al. Impaired microRNA processing causes corpus luteum insufficiency and infertility in mice. J Clin Invest. 2008; 118:1944-54.
    • (2008) J Clin Invest , vol.118 , pp. 1944-1954
    • Otsuka, M.1    Zheng, M.2    Hayashi, M.3
  • 50
    • 63849085097 scopus 로고    scopus 로고
    • A network of miRNAs expressed in the ovary are regulated by FSH
    • Yao N, Lu CL, Zhao JJ, et al. A network of miRNAs expressed in the ovary are regulated by FSH. Front Biosci. 2009; 14:3239-45.
    • (2009) Front Biosci , vol.14 , pp. 3239-3245
    • Yao, N.1    Lu, C.L.2    Zhao, J.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.