-
1
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
Wicker T., et al. A unified classification system for eukaryotic transposable elements. Nat. Rev. Genet. 2007, 8:973-982.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 973-982
-
-
Wicker, T.1
-
2
-
-
0020447816
-
Selfish DNA: a sexually-transmitted nuclear parasite
-
Hickey D.A. Selfish DNA: a sexually-transmitted nuclear parasite. Genetics 1982, 101:519-531.
-
(1982)
Genetics
, vol.101
, pp. 519-531
-
-
Hickey, D.A.1
-
3
-
-
0018857680
-
Selfish DNA: the ultimate parasite
-
Orgel L.E., Crick F.H. Selfish DNA: the ultimate parasite. Nature 1980, 284:604-607.
-
(1980)
Nature
, vol.284
, pp. 604-607
-
-
Orgel, L.E.1
Crick, F.H.2
-
4
-
-
0033287156
-
Sex brings transposons and genomes into conflict
-
Bestor T.H. Sex brings transposons and genomes into conflict. Genetica 1999, 107:289-295.
-
(1999)
Genetica
, vol.107
, pp. 289-295
-
-
Bestor, T.H.1
-
5
-
-
77956504685
-
Evolution of eukaryotic DNA methylation and the pursuit of safer sex
-
Zemach A., Zilberman D. Evolution of eukaryotic DNA methylation and the pursuit of safer sex. Curr. Biol. 2010, 20:R780-R785.
-
(2010)
Curr. Biol.
, vol.20
-
-
Zemach, A.1
Zilberman, D.2
-
6
-
-
79952152627
-
Nuclear DNA amounts in angiosperms: targets, trends and tomorrow
-
Bennett M.D., Leitch I.J. Nuclear DNA amounts in angiosperms: targets, trends and tomorrow. Ann. Bot. (Lond.) 2011, 107:467-590.
-
(2011)
Ann. Bot. (Lond.)
, vol.107
, pp. 467-590
-
-
Bennett, M.D.1
Leitch, I.J.2
-
7
-
-
77955273950
-
A triptych of the evolution of plant transposable elements
-
Tenaillon M.I., et al. A triptych of the evolution of plant transposable elements. Trends Plant Sci. 2010, 15:471-478.
-
(2010)
Trends Plant Sci.
, vol.15
, pp. 471-478
-
-
Tenaillon, M.I.1
-
8
-
-
66449124318
-
Epigenetic regulation of transposable elements in plants
-
Lisch D. Epigenetic regulation of transposable elements in plants. Annu. Rev. Plant Biol. 2009, 60:43-66.
-
(2009)
Annu. Rev. Plant Biol.
, vol.60
, pp. 43-66
-
-
Lisch, D.1
-
10
-
-
84893501715
-
The origin and effect of small RNA signaling in plants
-
Parent J.S., et al. The origin and effect of small RNA signaling in plants. Front. Plant Sci. 2012, 3:179.
-
(2012)
Front. Plant Sci.
, vol.3
, pp. 179
-
-
Parent, J.S.1
-
11
-
-
84880782438
-
RNA silencing and its suppression: novel insights from in planta analyses
-
Incarbone M., Dunoyer P. RNA silencing and its suppression: novel insights from in planta analyses. Trends Plant Sci. 2013, 18:382-392.
-
(2013)
Trends Plant Sci.
, vol.18
, pp. 382-392
-
-
Incarbone, M.1
Dunoyer, P.2
-
12
-
-
84872533627
-
RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond
-
Castel S.E., Martienssen R.A. RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond. Nat. Rev. Genet. 2013, 14:100-112.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 100-112
-
-
Castel, S.E.1
Martienssen, R.A.2
-
13
-
-
84892974070
-
Small RNAs and heritable epigenetic variation in plants
-
Bond D.M., Baulcombe D.C. Small RNAs and heritable epigenetic variation in plants. Trends Cell Biol. 2013, 24:100-107.
-
(2013)
Trends Cell Biol.
, vol.24
, pp. 100-107
-
-
Bond, D.M.1
Baulcombe, D.C.2
-
14
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law J.A., Jacobsen S.E. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet. 2010, 11:204-220.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
15
-
-
77951877468
-
Control of genic DNA methylation in Arabidopsis
-
Inagaki S., Kakutani T. Control of genic DNA methylation in Arabidopsis. J. Plant Res. 2010, 123:299-302.
-
(2010)
J. Plant Res.
, vol.123
, pp. 299-302
-
-
Inagaki, S.1
Kakutani, T.2
-
17
-
-
70350227275
-
Small RNAs and their roles in plant development
-
Chen X. Small RNAs and their roles in plant development. Annu. Rev. Cell Dev. Biol. 2009, 25:21-44.
-
(2009)
Annu. Rev. Cell Dev. Biol.
, vol.25
, pp. 21-44
-
-
Chen, X.1
-
18
-
-
78049414227
-
Epigenetic reprogramming in plant and animal development
-
Feng S., et al. Epigenetic reprogramming in plant and animal development. Science 2010, 330:622-627.
-
(2010)
Science
, vol.330
, pp. 622-627
-
-
Feng, S.1
-
19
-
-
79955082486
-
Transposable element origins of epigenetic gene regulation
-
Lisch D., Bennetzen J.L. Transposable element origins of epigenetic gene regulation. Curr. Opin. Plant Biol. 2011, 14:156-161.
-
(2011)
Curr. Opin. Plant Biol.
, vol.14
, pp. 156-161
-
-
Lisch, D.1
Bennetzen, J.L.2
-
20
-
-
84859199684
-
Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA
-
McCue A.D., et al. Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA. PLoS Genet. 2012, 8:e1002474.
-
(2012)
PLoS Genet.
, vol.8
-
-
McCue, A.D.1
-
21
-
-
84883125886
-
Genome-wide identification of genes regulated in trans by transposable element small interfering RNAs
-
McCue A.D., et al. Genome-wide identification of genes regulated in trans by transposable element small interfering RNAs. RNA Biol. 2013, 10:1379-1395.
-
(2013)
RNA Biol.
, vol.10
, pp. 1379-1395
-
-
McCue, A.D.1
-
22
-
-
84880120526
-
Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum
-
Veluchamy A., et al. Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum. Nat. Commun. 2013, 4:2091.
-
(2013)
Nat. Commun.
, vol.4
, pp. 2091
-
-
Veluchamy, A.1
-
23
-
-
0034716924
-
An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus
-
Dalmay T., et al. An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus. Cell 2000, 101:543-553.
-
(2000)
Cell
, vol.101
, pp. 543-553
-
-
Dalmay, T.1
-
24
-
-
84883454804
-
Reconstructing de novo silencing of an active plant retrotransposon
-
Marí-Ordóñez A., et al. Reconstructing de novo silencing of an active plant retrotransposon. Nat. Genet. 2013, 45:1029-1039.
-
(2013)
Nat. Genet.
, vol.45
, pp. 1029-1039
-
-
Marí-Ordóñez, A.1
-
25
-
-
84881046426
-
Proposed mechanism for the initiation of transposable element silencing by the RDR6-directed DNA methylation pathway
-
Panda K., Slotkin R.K. Proposed mechanism for the initiation of transposable element silencing by the RDR6-directed DNA methylation pathway. Plant Signal. Behav. 2013, 8:e25206.
-
(2013)
Plant Signal. Behav.
, vol.8
-
-
Panda, K.1
Slotkin, R.K.2
-
26
-
-
33745279055
-
Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning
-
Henderson I.R., et al. Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat. Genet. 2006, 38:721-725.
-
(2006)
Nat. Genet.
, vol.38
, pp. 721-725
-
-
Henderson, I.R.1
-
27
-
-
84867135388
-
Roles of dicer-like and argonaute proteins in TAS-derived small interfering RNA-triggered DNA methylation
-
Wu L., et al. Roles of dicer-like and argonaute proteins in TAS-derived small interfering RNA-triggered DNA methylation. Plant Physiol. 2012, 160:990-999.
-
(2012)
Plant Physiol.
, vol.160
, pp. 990-999
-
-
Wu, L.1
-
28
-
-
84877040915
-
The initiation of epigenetic silencing of active transposable elements is triggered by RDR6 and 21-22 nucleotide small interfering RNAs
-
Nuthikattu S., et al. The initiation of epigenetic silencing of active transposable elements is triggered by RDR6 and 21-22 nucleotide small interfering RNAs. Plant Physiol. 2013, 162:116-131.
-
(2013)
Plant Physiol.
, vol.162
, pp. 116-131
-
-
Nuthikattu, S.1
-
29
-
-
67349112845
-
RNA polymerase V transcription guides ARGONAUTE4 to chromatin
-
Wierzbicki A.T., et al. RNA polymerase V transcription guides ARGONAUTE4 to chromatin. Nat. Genet. 2009, 41:630-634.
-
(2009)
Nat. Genet.
, vol.41
, pp. 630-634
-
-
Wierzbicki, A.T.1
-
30
-
-
72849124237
-
Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis
-
Zheng B., et al. Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis. Genes Dev. 2009, 23:2850-2860.
-
(2009)
Genes Dev.
, vol.23
, pp. 2850-2860
-
-
Zheng, B.1
-
31
-
-
84881484905
-
What triggers differential DNA methylation of genes and TEs: contribution of body methylation?
-
Inagaki S., Kakutani T. What triggers differential DNA methylation of genes and TEs: contribution of body methylation?. Cold Spring Harb. Symp. Quant. Biol. 2013, 77:155-160.
-
(2013)
Cold Spring Harb. Symp. Quant. Biol.
, vol.77
, pp. 155-160
-
-
Inagaki, S.1
Kakutani, T.2
-
32
-
-
79960716754
-
Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing
-
Haag J.R., Pikaard C.S. Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing. Nat. Rev. Mol. Cell Biol. 2011, 12:483-492.
-
(2011)
Nat. Rev. Mol. Cell Biol.
, vol.12
, pp. 483-492
-
-
Haag, J.R.1
Pikaard, C.S.2
-
33
-
-
84865102012
-
Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome
-
Wierzbicki A.T., et al. Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome. Genes Dev. 2012, 26:1825-1836.
-
(2012)
Genes Dev.
, vol.26
, pp. 1825-1836
-
-
Wierzbicki, A.T.1
-
34
-
-
84866117758
-
DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons
-
Zhong X., et al. DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons. Nat. Struct. Mol. Biol. 2012, 19:870-875.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 870-875
-
-
Zhong, X.1
-
35
-
-
84879417659
-
Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1
-
Law J.A., et al. Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature 2013, 498:385-389.
-
(2013)
Nature
, vol.498
, pp. 385-389
-
-
Law, J.A.1
-
36
-
-
84870942752
-
In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing
-
Haag J.R., et al. In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing. Mol. Cell 2012, 48:811-818.
-
(2012)
Mol. Cell
, vol.48
, pp. 811-818
-
-
Haag, J.R.1
-
37
-
-
84863792071
-
RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats
-
Lee T.F., et al. RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats. Epigenetics 2012, 7:781-795.
-
(2012)
Epigenetics
, vol.7
, pp. 781-795
-
-
Lee, T.F.1
-
38
-
-
42749087226
-
Highly integrated single-base resolution maps of the Arabidopsis genome
-
Lister R., et al. Highly integrated single-base resolution maps of the Arabidopsis genome. Cell 2008, 133:523-536.
-
(2008)
Cell
, vol.133
, pp. 523-536
-
-
Lister, R.1
-
39
-
-
0037009520
-
Two classes of short interfering RNA in RNA silencing
-
Hamilton A., et al. Two classes of short interfering RNA in RNA silencing. EMBO J. 2002, 21:4671-4679.
-
(2002)
EMBO J.
, vol.21
, pp. 4671-4679
-
-
Hamilton, A.1
-
40
-
-
0037059080
-
RNA-directed DNA methylation in Arabidopsis
-
Aufsatz W., et al. RNA-directed DNA methylation in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 2002, 99(Suppl. 4):16499-16506.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, Issue.SUPPL. 4
, pp. 16499-16506
-
-
Aufsatz, W.1
-
41
-
-
3142640878
-
Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats
-
Zilberman D. Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Curr. Biol. 2004, 14:1214-1220.
-
(2004)
Curr. Biol.
, vol.14
, pp. 1214-1220
-
-
Zilberman, D.1
-
42
-
-
70049096990
-
Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin
-
Schoft V.K., et al. Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin. EMBO Rep. 2009, 10:1015-1021.
-
(2009)
EMBO Rep.
, vol.10
, pp. 1015-1021
-
-
Schoft, V.K.1
-
43
-
-
59349118366
-
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
-
Slotkin R.K., et al. Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell 2009, 136:461-472.
-
(2009)
Cell
, vol.136
, pp. 461-472
-
-
Slotkin, R.K.1
-
44
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus S.J., et al. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 2008, 452:215-219.
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
-
45
-
-
80055080002
-
Small RNAs prevent transcription-coupled loss of histone H3 lysine 9 methylation in Arabidopsis thaliana
-
Enke R.A., et al. Small RNAs prevent transcription-coupled loss of histone H3 lysine 9 methylation in Arabidopsis thaliana. PLoS Genet. 2011, 7:e1002350.
-
(2011)
PLoS Genet.
, vol.7
-
-
Enke, R.A.1
-
46
-
-
84866981889
-
Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants
-
Du J., et al. Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell 2012, 151:167-180.
-
(2012)
Cell
, vol.151
, pp. 167-180
-
-
Du, J.1
-
47
-
-
84875741680
-
The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin
-
Zemach A., et al. The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin. Cell 2013, 153:193-205.
-
(2013)
Cell
, vol.153
, pp. 193-205
-
-
Zemach, A.1
-
48
-
-
84893716683
-
Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis
-
Stroud H., et al. Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. Nat. Struct. Mol. Biol. 2014, 21:64-72.
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 64-72
-
-
Stroud, H.1
-
49
-
-
57149115354
-
SRA-domain proteins required for DRM2-mediated de novo DNA methylation
-
Johnson L.M., et al. SRA-domain proteins required for DRM2-mediated de novo DNA methylation. PLoS Genet. 2008, 4:e1000280.
-
(2008)
PLoS Genet.
, vol.4
-
-
Johnson, L.M.1
-
50
-
-
77952090735
-
An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation
-
Gao Z., et al. An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation. Nature 2010, 465:106-109.
-
(2010)
Nature
, vol.465
, pp. 106-109
-
-
Gao, Z.1
-
51
-
-
84895897598
-
SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation
-
Johnson L.M., et al. SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature 2014, 10.1038/nature12931.
-
(2014)
Nature
-
-
Johnson, L.M.1
-
52
-
-
34248340993
-
Role of RNA polymerase IV in plant small RNA metabolism
-
Zhang X., et al. Role of RNA polymerase IV in plant small RNA metabolism. Proc. Natl. Acad. Sci. U.S.A. 2007, 104:4536-4541.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 4536-4541
-
-
Zhang, X.1
-
53
-
-
42549096814
-
PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis
-
Mosher R.A., et al. PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis. Proc. Natl. Acad. Sci. U.S.A. 2008, 105:3145-3150.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 3145-3150
-
-
Mosher, R.A.1
-
54
-
-
84877866795
-
DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV
-
Zhang H., et al. DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV. Proc. Natl. Acad. Sci. U.S.A. 2013, 110:8290-8295.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 8290-8295
-
-
Zhang, H.1
-
55
-
-
79960960568
-
SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV
-
Law J.A., et al. SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. PLoS Genet. 2011, 7:e1002195.
-
(2011)
PLoS Genet.
, vol.7
-
-
Law, J.A.1
-
56
-
-
82655168764
-
An atypical component of RNA-directed DNA methylation machinery has both DNA methylation-dependent and -independent roles in locus-specific transcriptional gene silencing
-
Liu J., et al. An atypical component of RNA-directed DNA methylation machinery has both DNA methylation-dependent and -independent roles in locus-specific transcriptional gene silencing. Cell Res. 2011, 21:1691-1700.
-
(2011)
Cell Res.
, vol.21
, pp. 1691-1700
-
-
Liu, J.1
-
57
-
-
84872614860
-
Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome
-
Stroud H., et al. Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. Cell 2013, 152:352-364.
-
(2013)
Cell
, vol.152
, pp. 352-364
-
-
Stroud, H.1
-
58
-
-
29244467484
-
Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length
-
Woodcock C.L., et al. Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length. Chromosome Res. 2006, 14:17-25.
-
(2006)
Chromosome Res.
, vol.14
, pp. 17-25
-
-
Woodcock, C.L.1
-
59
-
-
33744831161
-
Structure of the '30nm' chromatin fibre: a key role for the linker histone
-
Robinson P.J., Rhodes D. Structure of the '30nm' chromatin fibre: a key role for the linker histone. Curr. Opin. Struct. Biol. 2006, 16:336-343.
-
(2006)
Curr. Opin. Struct. Biol.
, vol.16
, pp. 336-343
-
-
Robinson, P.J.1
Rhodes, D.2
-
60
-
-
19944427670
-
Silencing of transposons in plant genomes: kick them when they're down
-
Zilberman D., Henikoff S. Silencing of transposons in plant genomes: kick them when they're down. Genome Biol. 2004, 5:249.
-
(2004)
Genome Biol.
, vol.5
, pp. 249
-
-
Zilberman, D.1
Henikoff, S.2
-
61
-
-
0033529565
-
Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome
-
Kornberg R.D., Lorch Y. Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell 1999, 98:285-294.
-
(1999)
Cell
, vol.98
, pp. 285-294
-
-
Kornberg, R.D.1
Lorch, Y.2
-
62
-
-
77952355762
-
Genome-wide evolutionary analysis of eukaryotic DNA methylation
-
Zemach A., et al. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 2010, 328:916-919.
-
(2010)
Science
, vol.328
, pp. 916-919
-
-
Zemach, A.1
-
63
-
-
77952734605
-
Conservation and divergence of methylation patterning in plants and animals
-
Feng S., et al. Conservation and divergence of methylation patterning in plants and animals. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:8689-8694.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 8689-8694
-
-
Feng, S.1
-
64
-
-
84881530204
-
DNA methylation, H2A. Z, and the regulation of constitutive expression
-
Coleman-Derr D., Zilberman D. DNA methylation, H2A. Z, and the regulation of constitutive expression. Cold Spring Harb. Symp. Quant. Biol. 2012, 77:147-154.
-
(2012)
Cold Spring Harb. Symp. Quant. Biol.
, vol.77
, pp. 147-154
-
-
Coleman-Derr, D.1
Zilberman, D.2
-
65
-
-
84873156452
-
Gene body methylation is conserved between plant orthologs and is of evolutionary consequence
-
Takuno S., Gaut B.S. Gene body methylation is conserved between plant orthologs and is of evolutionary consequence. Proc. Natl. Acad. Sci. U.S.A. 2013, 110:1797-1802.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 1797-1802
-
-
Takuno, S.1
Gaut, B.S.2
-
66
-
-
33846931283
-
The SRA methyl-cytosine-binding domain links DNA and histone methylation
-
Johnson L.M., et al. The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr. Biol. 2007, 17:379-384.
-
(2007)
Curr. Biol.
, vol.17
, pp. 379-384
-
-
Johnson, L.M.1
-
67
-
-
38549116060
-
Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana
-
Saze H., et al. Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana. Science 2008, 319:462-465.
-
(2008)
Science
, vol.319
, pp. 462-465
-
-
Saze, H.1
-
68
-
-
77958510636
-
Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome
-
Inagaki S., et al. Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome. EMBO J. 2010, 29:3496-3506.
-
(2010)
EMBO J.
, vol.29
, pp. 3496-3506
-
-
Inagaki, S.1
-
69
-
-
78751580443
-
Differentiation of epigenetic modifications between transposons and genes
-
Saze H., Kakutani T. Differentiation of epigenetic modifications between transposons and genes. Curr. Opin. Plant Biol. 2011, 14:81-87.
-
(2011)
Curr. Opin. Plant Biol.
, vol.14
, pp. 81-87
-
-
Saze, H.1
Kakutani, T.2
-
70
-
-
65349171662
-
An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites
-
Miura A., et al. An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites. EMBO J. 2009, 28:1078-1086.
-
(2009)
EMBO J.
, vol.28
, pp. 1078-1086
-
-
Miura, A.1
-
71
-
-
84868122260
-
Deposition of histone variant H2A.Z. within gene bodies regulates responsive genes
-
Coleman-Derr D., Zilberman D. Deposition of histone variant H2A.Z. within gene bodies regulates responsive genes. PLoS Genet. 2012, 8:e1002988.
-
(2012)
PLoS Genet.
, vol.8
-
-
Coleman-Derr, D.1
Zilberman, D.2
-
72
-
-
84883130171
-
Mechanism for full-length RNA processing of Arabidopsis genes containing intragenic heterochromatin
-
Saze H., et al. Mechanism for full-length RNA processing of Arabidopsis genes containing intragenic heterochromatin. Nat. Commun. 2013, 4:2301.
-
(2013)
Nat. Commun.
, vol.4
, pp. 2301
-
-
Saze, H.1
-
73
-
-
84884335747
-
RNA-binding protein regulates plant DNA methylation by controlling mRNA processing at the intronic heterochromatin-containing gene IBM1
-
Wang X., et al. RNA-binding protein regulates plant DNA methylation by controlling mRNA processing at the intronic heterochromatin-containing gene IBM1. Proc. Natl. Acad. Sci. U.S.A. 2013, 110:15467-15472.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 15467-15472
-
-
Wang, X.1
-
74
-
-
68149144366
-
Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression
-
Hollister J.D., Gaut B.S. Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression. Genome Res. 2009, 19:1419-1428.
-
(2009)
Genome Res.
, vol.19
, pp. 1419-1428
-
-
Hollister, J.D.1
Gaut, B.S.2
-
75
-
-
79952303685
-
Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata
-
Hollister J.D., et al. Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata. Proc. Natl. Acad. Sci. U.S.A. 2011, 108:2322-2327.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 2322-2327
-
-
Hollister, J.D.1
-
76
-
-
84862298246
-
A histone acetyltransferase regulates active DNA demethylation in Arabidopsis
-
Qian W., et al. A histone acetyltransferase regulates active DNA demethylation in Arabidopsis. Science 2012, 336:1445-1448.
-
(2012)
Science
, vol.336
, pp. 1445-1448
-
-
Qian, W.1
-
77
-
-
84863980221
-
Antisilencing role of the RNA-directed DNA methylation pathway and a histone acetyltransferase in Arabidopsis
-
Li X., et al. Antisilencing role of the RNA-directed DNA methylation pathway and a histone acetyltransferase in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 2012, 109:11425-11430.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 11425-11430
-
-
Li, X.1
-
78
-
-
34249853277
-
DNA demethylation in the Arabidopsis genome
-
Penterman J., et al. DNA demethylation in the Arabidopsis genome. Proc. Natl. Acad. Sci. U.S.A. 2007, 104:6752-6757.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 6752-6757
-
-
Penterman, J.1
-
79
-
-
84866140080
-
Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes
-
Ibarra C.A., et al. Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science 2012, 337:1360-1364.
-
(2012)
Science
, vol.337
, pp. 1360-1364
-
-
Ibarra, C.A.1
-
80
-
-
33745561418
-
Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis
-
Huettel B., et al. Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis. EMBO J. 2006, 25:2828-2836.
-
(2006)
EMBO J.
, vol.25
, pp. 2828-2836
-
-
Huettel, B.1
-
81
-
-
84867053720
-
Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA
-
Calarco J.P., et al. Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA. Cell 2012, 151:194-205.
-
(2012)
Cell
, vol.151
, pp. 194-205
-
-
Calarco, J.P.1
-
82
-
-
84879629508
-
RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis
-
Vu T.M., et al. RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis. Development 2013, 140:2953-2960.
-
(2013)
Development
, vol.140
, pp. 2953-2960
-
-
Vu, T.M.1
-
83
-
-
78649810751
-
Local DNA hypomethylation activates genes in rice endosperm
-
Zemach A., et al. Local DNA hypomethylation activates genes in rice endosperm. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:18729-18734.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 18729-18734
-
-
Zemach, A.1
-
84
-
-
84863393179
-
Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm
-
Waters A.J., et al. Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm. Plant Cell 2011, 23:4221-4233.
-
(2011)
Plant Cell
, vol.23
, pp. 4221-4233
-
-
Waters, A.J.1
-
85
-
-
84877350957
-
Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm
-
Rodrigues J.A., et al. Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm. Proc. Natl. Acad. Sci. U.S.A. 2013, 110:7934-7939.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 7934-7939
-
-
Rodrigues, J.A.1
-
86
-
-
39749196238
-
Cellular programming of plant gene imprinting
-
Huh J.H., et al. Cellular programming of plant gene imprinting. Cell 2008, 132:735-744.
-
(2008)
Cell
, vol.132
, pp. 735-744
-
-
Huh, J.H.1
-
87
-
-
0037067658
-
DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in Arabidopsis
-
Choi Y., et al. DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in Arabidopsis. Cell 2002, 110:33-42.
-
(2002)
Cell
, vol.110
, pp. 33-42
-
-
Choi, Y.1
-
88
-
-
67650296444
-
ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing
-
Jacob Y., et al. ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing. Nat. Struct. Mol. Biol. 2009, 16:763-768.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 763-768
-
-
Jacob, Y.1
-
89
-
-
77955925952
-
Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases
-
Jacob Y., et al. Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases. Nature 2010, 466:987-991.
-
(2010)
Nature
, vol.466
, pp. 987-991
-
-
Jacob, Y.1
-
90
-
-
0034636551
-
Disruption of the plant gene MOM releases transcriptional silencing of methylated genes
-
Amedeo P., et al. Disruption of the plant gene MOM releases transcriptional silencing of methylated genes. Nature 2000, 405:203-206.
-
(2000)
Nature
, vol.405
, pp. 203-206
-
-
Amedeo, P.1
-
91
-
-
84862270547
-
MORC family ATPases required for heterochromatin condensation and gene silencing
-
Moissiard G., et al. MORC family ATPases required for heterochromatin condensation and gene silencing. Science 2012, 336:1448-1451.
-
(2012)
Science
, vol.336
, pp. 1448-1451
-
-
Moissiard, G.1
-
92
-
-
84861527038
-
Involvement of a GHKL ATPase in RNA-directed DNA methylation in Arabidopsis thaliana
-
Lorkovic Z.J., et al. Involvement of a GHKL ATPase in RNA-directed DNA methylation in Arabidopsis thaliana. Curr. Biol. 2012, 22:933-938.
-
(2012)
Curr. Biol.
, vol.22
, pp. 933-938
-
-
Lorkovic, Z.J.1
|