-
1
-
-
33746807366
-
Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation
-
Agius F, Kapoor A, Zhu JK. 2006. Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation. Proc Natl Acad Sci 103: 11796-11801.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 11796-11801
-
-
Agius, F.1
Kapoor, A.2
Zhu, J.K.3
-
2
-
-
73649112406
-
DNA LIGASE I exerts a maternal effect on seed development in Arabidopsis thaliana
-
Andreuzza S, Li J, Guitton AE, Faure JE, Casanova S, Park JS, Choi Y, Chen Z, Berger F. 2010. DNA LIGASE I exerts a maternal effect on seed development in Arabidopsis thaliana. Development 137: 73-81.
-
(2010)
Development
, vol.137
, pp. 73-81
-
-
Andreuzza, S.1
Li, J.2
Guitton, A.E.3
Faure, J.E.4
Casanova, S.5
Park, J.S.6
Choi, Y.7
Chen, Z.8
Berger, F.9
-
3
-
-
0035169663
-
Methyl-CpG-binding proteins
-
Ballestar E, Wolffe AP. 2001. Methyl-CpG-binding proteins. Targeting specific gene repression. Eur J Biochem 268: 1-6.
-
(2001)
Eur J Biochem
, vol.268
, pp. 1-6
-
-
Ballestar, E.1
Wolffe, A.P.2
-
4
-
-
77649104794
-
Reprogramming towards pluripotency requires AID-dependent DNA demethylation
-
Bhutani N, Brady JJ, Damian M, Sacco A, Corbel SY, Blau HM. 2010. Reprogramming towards pluripotency requires AID-dependent DNA demethylation. Nature 463: 1042-1047.
-
(2010)
Nature
, vol.463
, pp. 1042-1047
-
-
Bhutani, N.1
Brady, J.J.2
Damian, M.3
Sacco, A.4
Corbel, S.Y.5
Blau, H.M.6
-
5
-
-
80052933429
-
DNA demethylation dynamics
-
Bhutani N, Burns DM, Blau HM. 2011. DNA demethylation dynamics. Cell 146: 866-872.
-
(2011)
Cell
, vol.146
, pp. 866-872
-
-
Bhutani, N.1
Burns, D.M.2
Blau, H.M.3
-
6
-
-
0037340215
-
Selective, stable demethylation of the interleukin-2 gene enhances transcription by an active process
-
Bruniquel D, Schwartz RH. 2003. Selective, stable demethylation of the interleukin-2 gene enhances transcription by an active process. Nat Immunol 4: 235-240.
-
(2003)
Nat Immunol
, vol.4
, pp. 235-240
-
-
Bruniquel, D.1
Schwartz, R.H.2
-
7
-
-
0037046810
-
Role of the Arabidopsis DRM methyltransferases in denovo DNA methylation and gene silencing
-
Cao X, Jacobsen SE. 2002. Role of the Arabidopsis DRM methyltransferases in denovo DNA methylation and gene silencing. Curr Biol 12: 1138-1144.
-
(2002)
Curr Biol
, vol.12
, pp. 1138-1144
-
-
Cao, X.1
Jacobsen, S.E.2
-
8
-
-
67349190247
-
Linking DNA methylation and histone modification: Patterns and paradigms
-
Cedar H, Bergman Y. 2009. Linking DNA methylation and histone modification: Patterns and paradigms. Nat Rev Genet 10: 295-304.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 295-304
-
-
Cedar, H.1
Bergman, Y.2
-
9
-
-
0141755305
-
T:G mismatch-specific thymine-DNA glycosylase potentiates transcription of estrogen-regulated genes through direct interaction with estrogen receptor alpha
-
Chen D, Lucey MJ, Phoenix F, Lopez-Garcia J, Hart SM, Losson R, Buluwela L, Coombes RC, Chambon P, Schär P, et al. 2003. T:G mismatch-specific thymine-DNA glycosylase potentiates transcription of estrogen-regulated genes through direct interaction with estrogen receptor alpha. J Biol Chem 278: 38586-38592.
-
(2003)
J Biol Chem
, vol.278
, pp. 38586-38592
-
-
Chen, D.1
Lucey, M.J.2
Phoenix, F.3
Lopez-Garcia, J.4
Hart, S.M.5
Losson, R.6
Buluwela, L.7
Coombes, R.C.8
Chambon, P.9
Schär, P.10
-
10
-
-
40049094942
-
Mammalian DNA methyl-transferases: A structural perspective
-
Cheng X, Blumenthal RM. 2008. Mammalian DNA methyl-transferases: A structural perspective. Structure 16: 341-350.
-
(2008)
Structure
, vol.16
, pp. 341-350
-
-
Cheng, X.1
Blumenthal, R.M.2
-
11
-
-
73449102478
-
The interaction between thymine DNA glycosylase and nuclear receptor coactivator 3 is required for the transcriptional activation of nuclear hormone receptors
-
Chiang S, Burch T, Van Domselaar G, Dick K, Radziwon A, Brusnyk C, Edwards MR, Piper J, Cutts T, Cao J, et al. 2010. The interaction between thymine DNA glycosylase and nuclear receptor coactivator 3 is required for the transcriptional activation of nuclear hormone receptors. Mol Cell Biochem 333: 221-232.
-
(2010)
Mol Cell Biochem
, vol.333
, pp. 221-232
-
-
Chiang, S.1
Burch, T.2
Van Domselaar, G.3
Dick, K.4
Radziwon, A.5
Brusnyk, C.6
Edwards, M.R.7
Piper, J.8
Cutts, T.9
Cao, J.10
-
12
-
-
77954659099
-
Relationship between nucleosome positioning and DNA methylation
-
Chodavarapu RK, Feng S, Bernatavichute YV, Chen PY, Stroud H, Yu Y, Hetzel JA, Kuo F, Kim J, Cokus SJ, et al. 2010. Relationship between nucleosome positioning and DNA methylation. Nature 466: 388-392.
-
(2010)
Nature
, vol.466
, pp. 388-392
-
-
Chodavarapu, R.K.1
Feng, S.2
Bernatavichute, Y.V.3
Chen, P.Y.4
Stroud, H.5
Yu, Y.6
Hetzel, J.A.7
Kuo, F.8
Kim, J.9
Cokus, S.J.10
-
13
-
-
0037067658
-
TER,a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in Arabidopsis
-
Choi Y, Gehring M, Johnson L, Hannon M, Harada JJ, Goldberg RB, Jacobsen SE, Fischer RL. 2002. TER,a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in Arabidopsis. Cell 110: 33-42.
-
(2002)
Cell
, vol.110
, pp. 33-42
-
-
Choi, Y.1
Gehring, M.2
Johnson, L.3
Hannon, M.4
Harada, J.J.5
Goldberg, R.B.6
Jacobsen, S.E.7
Fischer, R.L.8
-
15
-
-
79959937861
-
Thymine DNA glycosylase is essential for active DNA de-methylation by linked deamination-base excision repair
-
Cortellino S, Xu J, Sannai M, Moore R, Caretti E, Cigliano A, Le Coz M, Devarajan K, Wessels A, Soprano D, et al. 2011. Thymine DNA glycosylase is essential for active DNA de-methylation by linked deamination-base excision repair. Cell 146: 67-79.
-
(2011)
Cell
, vol.146
, pp. 67-79
-
-
Cortellino, S.1
Xu, J.2
Sannai, M.3
Moore, R.4
Caretti, E.5
Cigliano, A.6
Le Coz, M.7
Devarajan, K.8
Wessels, A.9
Soprano, D.10
-
16
-
-
0035923602
-
Conservation of methylation reprogramming in mammalian development: Aberrant reprogramming in cloned embryos
-
Dean W,Santos F, Stojkovic M,ZakhartchenkoV,WalterJ,Wolf E, Reik W. 2001. Conservation of methylation reprogramming in mammalian development: Aberrant reprogramming in cloned embryos. Proc Natl Acad Sci 98: 13734-13738.
-
(2001)
Proc Natl Acad Sci
, vol.98
, pp. 13734-13738
-
-
Dean, W.1
Santos, F.2
Stojkovic, M.3
Zakhartchenko, V.4
Walter, J.5
Wolf, E.6
Reik, W.7
-
17
-
-
57749199276
-
Interplay of RNA Pol IV and ROS1 during post-embryonic 5S rDNA chromatin remodeling
-
Douet J, Blanchard B, Cuvillier C, Tourmente S. 2008. Interplay of RNA Pol IV and ROS1 during post-embryonic 5S rDNA chromatin remodeling. Plant Cell Physiol 49: 1783-1791.
-
(2008)
Plant Cell Physiol
, vol.49
, pp. 1783-1791
-
-
Douet, J.1
Blanchard, B.2
Cuvillier, C.3
Tourmente, S.4
-
18
-
-
10344240948
-
The chromatin remodelling complex FACT associates with actively transcribed regions of the Arabidopsis genome
-
Duroux M, Houben A, Ruzicka K, Friml J, Grasser KD. 2004. The chromatin remodelling complex FACT associates with actively transcribed regions of the Arabidopsis genome. Plant J 40: 660-671.
-
(2004)
Plant J
, vol.40
, pp. 660-671
-
-
Duroux, M.1
Houben, A.2
Ruzicka, K.3
Friml, J.4
Grasser, K.D.5
-
19
-
-
0020489781
-
Amount and distribution of 5-methylcytosine in human DNA from different types of tissues of cells
-
Ehrlich M, Gama-Sosa MA, Huang LH, Midgett RM, Kuo KC, McCune RA, Gehrke C. 1982. Amount and distribution of 5-methylcytosine in human DNA from different types of tissues of cells. Nucleic Acids Res 10: 2709-2721.
-
(1982)
Nucleic Acids Res
, vol.10
, pp. 2709-2721
-
-
Ehrlich, M.1
Gama-Sosa, M.A.2
Huang, L.H.3
Midgett, R.M.4
Kuo, K.C.5
McCune, R.A.6
Gehrke, C.7
-
20
-
-
0345467527
-
Demethylation of DNA by purified chick embryo 5-methylcytosine-DNA glycosylase requires both protein and RNA
-
Frémont M, Siegmann M, Gaulis S, Matthies R, Hess D, Jost JP. 1997. Demethylation of DNA by purified chick embryo 5-methylcytosine-DNA glycosylase requires both protein and RNA. Nucleic Acids Res 25: 2375-2380.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 2375-2380
-
-
Frémont, M.1
Siegmann, M.2
Gaulis, S.3
Matthies, R.4
Hess, D.5
Jost, J.P.6
-
21
-
-
77952090735
-
An RNA polymerase II-and AGO4-associated protein acts in RNA-directed DNA methylation
-
Gao Z, Liu HL, Daxinger L, Pontes O,He X,Qian W, Lin H, Xie M, Lorkovic ZJ, Zhang S, et al. 2010. An RNA polymerase II-and AGO4-associated protein acts in RNA-directed DNA methylation. Nature 465: 106-109.
-
(2010)
Nature
, vol.465
, pp. 106-109
-
-
Gao, Z.1
Liu, H.L.2
Daxinger, L.3
Pontes, O.4
He, X.5
Qian, W.6
Lin, H.7
Xie, M.8
Lorkovic, Z.J.9
Zhang, S.10
-
22
-
-
32044470027
-
DEMETER DNA glycosy-lase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation
-
Gehring M, Huh JH, Hsieh TF, Penterman J, Choi Y, Harada JJ, Goldberg RB, Fischer RL. 2006. DEMETER DNA glycosy-lase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation. Cell 124: 495-506.
-
(2006)
Cell
, vol.124
, pp. 495-506
-
-
Gehring, M.1
Huh, J.H.2
Hsieh, T.F.3
Penterman, J.4
Choi, Y.5
Harada, J.J.6
Goldberg, R.B.7
Fischer, R.L.8
-
23
-
-
67149086996
-
Extensive demethylation of repetitive elements during seed development underlies gene imprinting
-
Gehring M, Bubb KL, Henikoff S. 2009. Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science 324: 1447-1451.
-
(2009)
Science
, vol.324
, pp. 1447-1451
-
-
Gehring, M.1
Bubb, K.L.2
Henikoff, S.3
-
24
-
-
15744401773
-
Eukaryotic cytosine methyltransferases
-
Goll MG, Bestor TH. 2005. Eukaryotic cytosine methyltransferases. Annu Rev Biochem 74: 481-514.
-
(2005)
Annu Rev Biochem
, vol.74
, pp. 481-514
-
-
Goll, M.G.1
Bestor, T.H.2
-
25
-
-
0037074009
-
ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase
-
Gong Z, Morales-Ruiz T, Ariza RR, Roldán-Arjona T, David L, Zhu JK. 2002. ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase. Cell 111: 803-814.
-
(2002)
Cell
, vol.111
, pp. 803-814
-
-
Gong, Z.1
Morales-Ruiz, T.2
Ariza, R.R.3
Roldán-Arjona, T.4
David, L.5
Zhu, J.K.6
-
26
-
-
0034234237
-
CBP/p300 in cell growth, transformation, and development
-
Goodman RH, Smolik S. 2000. CBP/p300 in cell growth, transformation, and development. Genes Dev 14: 1553-1577.
-
(2000)
Genes Dev
, vol.14
, pp. 1553-1577
-
-
Goodman, R.H.1
Smolik, S.2
-
27
-
-
80053348585
-
The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes
-
Gu TP, Guo F, Yang H, Wu HP, Xu GF, Liu W, Xie ZG, Shi L, He X, Jin SG, et al. 2011. The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes. Nature 477: 606-610.
-
(2011)
Nature
, vol.477
, pp. 606-610
-
-
Gu, T.P.1
Guo, F.2
Yang, H.3
Wu, H.P.4
Xu, G.F.5
Liu, W.6
Xie, Z.G.7
Shi, L.8
He, X.9
Jin, S.G.10
-
28
-
-
79955538247
-
Hydroxylation of 5-methylcytosine by TET1 promotes active DNA de-methylation in the adult brain
-
Guo JU, Su Y, Zhong C, Ming GL, Song H.2011. Hydroxylation of 5-methylcytosine by TET1 promotes active DNA de-methylation in the adult brain. Cell 145: 423-434.
-
(2011)
Cell
, vol.145
, pp. 423-434
-
-
Guo, J.U.1
Su, Y.2
Zhong, C.3
Ming, G.L.4
Song, H.5
-
29
-
-
79960716754
-
Multisubunit RNA polymerases IV and V: Purveyors of non-coding RNA for plant gene silencing
-
Haag JR, Pikaard CS. 2011. Multisubunit RNA polymerases IV and V: Purveyors of non-coding RNA for plant gene silencing. Nat Rev Mol Cell Biol 12: 483-492.
-
(2011)
Nat Rev Mol Cell Biol
, vol.12
, pp. 483-492
-
-
Haag, J.R.1
Pikaard, C.S.2
-
30
-
-
0036768615
-
Epigenetic reprogramming in mouse primordial germ cells
-
Hajkova P, Erhardt S, Lane N, Haaf T, El-Maarri O, Reik W, Walter J, Surani MA. 2002. Epigenetic reprogramming in mouse primordial germ cells. Mech Dev 117: 15-23.
-
(2002)
Mech Dev
, vol.117
, pp. 15-23
-
-
Hajkova, P.1
Erhardt, S.2
Lane, N.3
Haaf, T.4
El-Maarri, O.5
Reik, W.6
Walter, J.7
Surani, M.A.8
-
31
-
-
42249094716
-
Chromatin dynamics during epigenetic reprogramming in the mouse germ line
-
Hajkova P, Ancelin K, Waldmann T, Lacoste N, Lange UC, Cesari F, Lee C, Almouzni G, Schneider R, Surani MA. 2008. Chromatin dynamics during epigenetic reprogramming in the mouse germ line. Nature 452: 877-881.
-
(2008)
Nature
, vol.452
, pp. 877-881
-
-
Hajkova, P.1
Ancelin, K.2
Waldmann, T.3
Lacoste, N.4
Lange, U.C.5
Cesari, F.6
Lee, C.7
Almouzni, G.8
Schneider, R.9
Surani, M.A.10
-
32
-
-
77954345408
-
Genome-wide reprogramming in the mouse germ line entails the base excision repair pathway
-
Hajkova P, Jeffries SJ, Lee C, Miller N, Jackson SP, Surani MA. 2010. Genome-wide reprogramming in the mouse germ line entails the base excision repair pathway. Science 329: 78-82.
-
(2010)
Science
, vol.329
, pp. 78-82
-
-
Hajkova, P.1
Jeffries, S.J.2
Lee, C.3
Miller, N.4
Jackson, S.P.5
Surani, M.A.6
-
33
-
-
65249093731
-
An effector of RNA-di-rectedDNAmethylationinarabidopsisisanARGONAUTE4-and RNA-binding protein
-
He XJ, Hsu YF, Zhu S, Wierzbicki AT, Pontes O, Pikaard CS, Liu HL, Wang CS, Jin H, Zhu JK. 2009. An effector of RNA-di-rectedDNAmethylationinarabidopsisisanARGONAUTE4-and RNA-binding protein. Cell 137: 498-508.
-
(2009)
Cell
, vol.137
, pp. 498-508
-
-
He, X.J.1
Hsu, Y.F.2
Zhu, S.3
Wierzbicki, A.T.4
Pontes, O.5
Pikaard, C.S.6
Liu, H.L.7
Wang, C.S.8
Jin, H.9
Zhu, J.K.10
-
34
-
-
80052495940
-
Tet-mediated formation of 5-carboxylcy-tosine and its excision by TDG in mammalian DNA
-
He YF, Li BZ, Li Z, Liu P, Wang Y, Tang Q, Ding J, Jia Y, Chen Z, Li L, et al. 2011. Tet-mediated formation of 5-carboxylcy-tosine and its excision by TDG in mammalian DNA. Science 333: 1303-1307.
-
(2011)
Science
, vol.333
, pp. 1303-1307
-
-
He, Y.F.1
Li, B.Z.2
Li, Z.3
Liu, P.4
Wang, Y.5
Tang, Q.6
Ding, J.7
Jia, Y.8
Chen, Z.9
Li, L.10
-
35
-
-
34249330696
-
Epigenetic inheritance in plants
-
Henderson IR, Jacobsen SE. 2007. Epigenetic inheritance in plants. Nature 447: 418-424.
-
(2007)
Nature
, vol.447
, pp. 418-424
-
-
Henderson, I.R.1
Jacobsen, S.E.2
-
36
-
-
67149119197
-
Genome-wide demethylation of Arabidopsis endosperm
-
Hsieh TF, Ibarra CA, Silva P, Zemach A, Eshed-Williams L, Fischer RL, Zilberman D. 2009. Genome-wide demethylation of Arabidopsis endosperm. Science 324: 1451-1454.
-
(2009)
Science
, vol.324
, pp. 1451-1454
-
-
Hsieh, T.F.1
Ibarra, C.A.2
Silva, P.3
Zemach, A.4
Eshed-Williams, L.5
Fischer, R.L.6
Zilberman, D.7
-
37
-
-
77749277177
-
The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing
-
Huang Y, Pastor WA, Shen Y, Tahiliani M, Liu DR, Rao A. 2010. The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing. PLoS One 5: e8888.
-
(2010)
PLoS One
, vol.5
-
-
Huang, Y.1
Pastor, W.A.2
Shen, Y.3
Tahiliani, M.4
Liu, D.R.5
Rao, A.6
-
38
-
-
33745561418
-
Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis
-
Huettel B, Kanno T, Daxinger L, Aufsatz W, Matzke AJ, Matzke M. 2006. Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis. EMBO J 25: 2828-2836.
-
(2006)
EMBO J
, vol.25
, pp. 2828-2836
-
-
Huettel, B.1
Kanno, T.2
Daxinger, L.3
Aufsatz, W.4
Matzke, A.J.5
Matzke, M.6
-
40
-
-
80052701597
-
HMG domain containing SSRP1 is required for DNA demethylation and genomic imprinting in Arabidopsis
-
Ikeda Y, Kinoshita Y, Susaki D, Ikeda Y, Iwano M, Takayama S, Higashiyama T, Kakutani T, Kinoshita T. 2011. HMG domain containing SSRP1 is required for DNA demethylation and genomic imprinting in Arabidopsis. Dev Cell 21: 589-596.
-
(2011)
Dev Cell
, vol.21
, pp. 589-596
-
-
Ikeda, Y.1
Kinoshita, Y.2
Susaki, D.3
Ikeda, Y.4
Iwano, M.5
Takayama, S.6
Higashiyama, T.7
Kakutani, T.8
Kinoshita, T.9
-
41
-
-
80054097425
-
Replication-dependent loss of 5-hy-droxymethylcytosine in mouse preimplantation embryos
-
Inoue A, Zhang Y. 2011. Replication-dependent loss of 5-hy-droxymethylcytosine in mouse preimplantation embryos. Science 334: 194.
-
(2011)
Science
, vol.334
, pp. 194
-
-
Inoue, A.1
Zhang, Y.2
-
42
-
-
79952763586
-
Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine
-
Iqbal K, Jin SG, Pfeifer GP, Szabó PE. 2011. Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine. Proc Natl Acad Sci 108: 3642-3647.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 3642-3647
-
-
Iqbal, K.1
Jin, S.G.2
Pfeifer, G.P.3
Szabó, P.E.4
-
43
-
-
79953746026
-
An siRNA pathway prevents transgenerational retro-transposition in plants subjected to stress
-
Ito H, Gaubert H, Bucher E, Mirouze M, Vaillant I, Paszkowski J. 2011a. An siRNA pathway prevents transgenerational retro-transposition in plants subjected to stress. Nature 472:115-119.
-
(2011)
Nature
, vol.472
, pp. 115-119
-
-
Ito, H.1
Gaubert, H.2
Bucher, E.3
Mirouze, M.4
Vaillant, I.5
Paszkowski, J.6
-
44
-
-
80052461558
-
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
-
Ito S, Shen L, Dai Q, Wu SC, Collins LB, Swenberg JA, He C, Zhang Y. 2011b. Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science 333: 1300-1303.
-
(2011)
Science
, vol.333
, pp. 1300-1303
-
-
Ito, S.1
Shen, L.2
Dai, Q.3
Wu, S.C.4
Collins, L.B.5
Swenberg, J.A.6
He, C.7
Zhang, Y.8
-
45
-
-
0032963687
-
A reinvestigation of the ribonuclease sensitivity of a DNA demethylation reaction in chicken embryo and G8 mouse myoblasts
-
Jost JP, Siegmann M, Thiry S, Jost YC, Benjamin D, Schwarz S. 1999. A reinvestigation of the ribonuclease sensitivity of a DNA demethylation reaction in chicken embryo and G8 mouse myoblasts. FEBS Lett 449: 251-254.
-
(1999)
FEBS Lett
, vol.449
, pp. 251-254
-
-
Jost, J.P.1
Siegmann, M.2
Thiry, S.3
Jost, Y.C.4
Benjamin, D.5
Schwarz, S.6
-
46
-
-
50249117653
-
Retinoblastoma and its binding partner MSI1 control imprinting in Arabidopsis
-
Jullien PE, Mosquna A, Ingouff M, Sakata T, Ohad N, Berger F. 2008. Retinoblastoma and its binding partner MSI1 control imprinting in Arabidopsis. PLoS Biol 6: e194.
-
(2008)
PLoS Biol
, vol.6
-
-
Jullien, P.E.1
Mosquna, A.2
Ingouff, M.3
Sakata, T.4
Ohad, N.5
Berger, F.6
-
47
-
-
80053065324
-
A 5-methylcytosine DNA glycosylase/lyase demethylates the retro-transposon Tos17 and promotes its transposition in rice
-
La H, Ding B, Mishra GP, Zhou B, Yang H, Bellizzi Mdel R, Chen S, Meyers BC, Peng Z, Zhu JK, et al. 2011. A 5-methylcytosine DNA glycosylase/lyase demethylates the retro-transposon Tos17 and promotes its transposition in rice. Proc Natl Acad Sci 108: 15498-15503.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 15498-15503
-
-
La, H.1
Ding, B.2
Mishra, G.P.3
Zhou, B.4
Yang, H.5
Bellizzi Mdel, R.6
Chen, S.7
Meyers, B.C.8
Peng, Z.9
Zhu, J.K.10
-
48
-
-
0037298161
-
Resistance of IAPs to methylation reprogramming may provide a mechanism for epigenetic inheritance in the mouse
-
Lane N, Dean W, Erhardt S, Hajkova P, Surani A, Walter J, Reik W. 2003. Resistance of IAPs to methylation reprogramming may provide a mechanism for epigenetic inheritance in the mouse. Genesis 35: 88-93.
-
(2003)
Genesis
, vol.35
, pp. 88-93
-
-
Lane, N.1
Dean, W.2
Erhardt, S.3
Hajkova, P.4
Surani, A.5
Walter, J.6
Reik, W.7
-
49
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law JA, Jacobsen SE. 2010. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet 11: 204-220.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
50
-
-
53249098795
-
A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints
-
Li X, Ito M, Zhou F, Youngson N, Zuo X, Leder P, Ferguson-Smith AC. 2008. A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints. Dev Cell 15: 547-557.
-
(2008)
Dev Cell
, vol.15
, pp. 547-557
-
-
Li, X.1
Ito, M.2
Zhou, F.3
Youngson, N.4
Zuo, X.5
Leder, P.6
Ferguson-Smith, A.C.7
-
51
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, Ecker JR. 2008. Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 133: 523-536.
-
(2008)
Cell
, vol.133
, pp. 523-536
-
-
Lister, R.1
O'Malley, R.C.2
Tonti-Filippini, J.3
Gregory, B.D.4
Berry, C.C.5
Millar, A.H.6
Ecker, J.R.7
-
52
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Z, Ngo QM, et al. 2009. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462: 315-322.
-
(2009)
Nature
, vol.462
, pp. 315-322
-
-
Lister, R.1
Pelizzola, M.2
Dowen, R.H.3
Hawkins, R.D.4
Hon, G.5
Tonti-Filippini, J.6
Nery, J.R.7
Lee, L.8
Ye, Z.9
Ngo, Q.M.10
-
53
-
-
77956798477
-
DNA replication factor C1 mediates genomic stability and transcriptional gene silencing in Arabidopsis
-
Liu Q, Wang J, Miki D, Xia R, Yu W, He J, Zheng Z, Zhu JK, Gong Z. 2010. DNA replication factor C1 mediates genomic stability and transcriptional gene silencing in Arabidopsis. Plant Cell 22: 2336-2352.
-
(2010)
Plant Cell
, vol.22
, pp. 2336-2352
-
-
Liu, Q.1
Wang, J.2
Miki, D.3
Xia, R.4
Yu, W.5
He, J.6
Zheng, Z.7
Zhu, J.K.8
Gong, Z.9
-
54
-
-
28544432100
-
T:G mismatch-specific thymine-DNA glycosylase (TDG) as a coregulator of transcription interacts with SRC1 family members through a novel tyrosine repeat motif
-
Lucey MJ, Chen D, Lopez-Garcia J, Hart SM, Phoenix F, Al-Jehani R, Alao JP, White R, Kindle KB, Losson R, et al. 2005. T:G mismatch-specific thymine-DNA glycosylase (TDG) as a coregulator of transcription interacts with SRC1 family members through a novel tyrosine repeat motif. Nucleic Acids Res 33: 6393-6404.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6393-6404
-
-
Lucey, M.J.1
Chen, D.2
Lopez-Garcia, J.3
Hart, S.M.4
Phoenix, F.5
Al-Jehani, R.6
Alao, J.P.7
White, R.8
Kindle, K.B.9
Losson, R.10
-
55
-
-
60749094831
-
Neuronal activity-induced Gadd45b promotes epigenetic DNA demethylation and adult neurogenesis
-
Ma DK, Jang MH, Guo JU, Kitabatake Y, Chang ML, Pow-Anpongkul N, Flavell RA, Lu B, Ming GL, Song H. 2009. Neuronal activity-induced Gadd45b promotes epigenetic DNA demethylation and adult neurogenesis. Science 323: 1074-1077.
-
(2009)
Science
, vol.323
, pp. 1074-1077
-
-
Ma, D.K.1
Jang, M.H.2
Guo, J.U.3
Kitabatake, Y.4
Chang, M.L.5
Pow-Anpongkul, N.6
Flavell, R.A.7
Lu, B.8
Ming, G.L.9
Song, H.10
-
56
-
-
80053917872
-
Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: Potential implications for active demethylation of CpG sites
-
Maiti A, Drohat AC. 2011. Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: Potential implications for active demethylation of CpG sites. J Biol Chem 286: 35334-35338.
-
(2011)
J Biol Chem
, vol.286
, pp. 35334-35338
-
-
Maiti, A.1
Drohat, A.C.2
-
58
-
-
84863036797
-
A DNA 30 phosphatase functions in active DNA de-methylation in Arabidopsis
-
Martínez-Macías MI, Qian W, Miki D, Pontes O, Liu Y, Tang K, Liu R, Morales-Ruiz T, Ariza RR, Roldán-Arjona T, et al. 2012. A DNA 30 phosphatase functions in active DNA de-methylation in Arabidopsis. Mol Cell 45: 357-370.
-
(2012)
Mol Cell
, vol.45
, pp. 357-370
-
-
Martínez-Macías, M.I.1
Qian, W.2
Miki, D.3
Pontes, O.4
Liu, Y.5
Tang, K.6
Liu, R.7
Morales-Ruiz, T.8
Ariza, R.R.9
Roldán-Arjona, T.10
-
59
-
-
34548299554
-
Transgenerational stability of the Arabidopsis epige-nome is coordinated by CG methylation
-
Mathieu O, Reinders J, Caikovski M, Smathajitt C, Paszkowski J. 2007. Transgenerational stability of the Arabidopsis epige-nome is coordinated by CG methylation. Cell 130: 851-862.
-
(2007)
Cell
, vol.130
, pp. 851-862
-
-
Mathieu, O.1
Reinders, J.2
Caikovski, M.3
Smathajitt, C.4
Paszkowski, J.5
-
60
-
-
34848904239
-
Targets of RNA-directed DNA methylation
-
Matzke M, Kanno T, Huettel B, Daxinger L, Matzke AJ. 2007. Targets of RNA-directed DNA methylation. Curr Opin Plant Biol 10: 512-519.
-
(2007)
Curr Opin Plant Biol
, vol.10
, pp. 512-519
-
-
Matzke, M.1
Kanno, T.2
Huettel, B.3
Daxinger, L.4
Matzke, A.J.5
-
61
-
-
0034598784
-
Demethylation of the zygotic paternal genome
-
Mayer W, Niveleau A, Walter J, Fundele R, Haaf T. 2000. Demethylation of the zygotic paternal genome. Nature 403: 501-502.
-
(2000)
Nature
, vol.403
, pp. 501-502
-
-
Mayer, W.1
Niveleau, A.2
Walter, J.3
Fundele, R.4
Haaf, T.5
-
62
-
-
40449123137
-
Cyclical DNA methylation of a transcriptionally active promoter
-
Métivier R, Gallais R, Tiffoche C, Le Péron C, Jurkowska RZ, Carmouche RP, Ibberson D, Barath P, Demay F, Reid G, et al. 2008. Cyclical DNA methylation of a transcriptionally active promoter. Nature 452: 45-50.
-
(2008)
Nature
, vol.452
, pp. 45-50
-
-
Métivier, R.1
Gallais, R.2
Tiffoche, C.3
Le Péron, C.4
Jurkowska, R.Z.5
Carmouche, R.P.6
Ibberson, D.7
Barath, P.8
Demay, F.9
Reid, G.10
-
63
-
-
65349171662
-
An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites
-
Miura A, Nakamura M, Inagaki S, Kobayashi A, Saze H, Kaku-tani T. 2009. An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites. EMBO J 28: 1078-1086.
-
(2009)
EMBO J
, vol.28
, pp. 1078-1086
-
-
Miura, A.1
Nakamura, M.2
Inagaki, S.3
Kobayashi, A.4
Saze, H.5
Kaku-tani, T.6
-
64
-
-
78650592376
-
Domain structure of the DEMETER 5-methylcytosine DNA glycosylase
-
Mok YG, Uzawa R, Lee J, Weiner GM, Eichman BF, Fischer RL, Huh JH. 2010. Domain structure of the DEMETER 5-methylcytosine DNA glycosylase. Proc Natl Acad Sci 107: 19225-19230.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 19225-19230
-
-
Mok, Y.G.1
Uzawa, R.2
Lee, J.3
Weiner, G.M.4
Eichman, B.F.5
Fischer, R.L.6
Huh, J.H.7
-
65
-
-
77952403409
-
Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells
-
Molnar A, Melnyk CW, Bassett A, Hardcastle TJ, Dunn R, Baulcombe DC. 2010. Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells. Science 328: 872-875.
-
(2010)
Science
, vol.328
, pp. 872-875
-
-
Molnar, A.1
Melnyk, C.W.2
Bassett, A.3
Hardcastle, T.J.4
Dunn, R.5
Baulcombe, D.C.6
-
66
-
-
33646473818
-
DEMETER and REPRESSOR OF SILENCING 1 encode 5-methylcytosine DNA glycosylases
-
Morales-Ruiz T, Ortega-Galisteo AP, Ponferrada-Marín MI, Martínez-Macías MI, Ariza RR, Roldán-Arjona T. 2006. DEMETER and REPRESSOR OF SILENCING 1 encode 5-methylcytosine DNA glycosylases. Proc Natl Acad Sci 103: 6853-6858.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 6853-6858
-
-
Morales-Ruiz, T.1
Ortega-Galisteo, A.P.2
Ponferrada-Marín, M.I.3
Martínez-Macías, M.I.4
Ariza, R.R.5
Roldán-Arjona, T.6
-
67
-
-
10644282845
-
Activation-induced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: Implications for epigenetic reprogramming
-
Morgan HD, Dean W, Coker HA, Reik W, Petersen-Mahrt SK. 2004. Activation-induced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: Implications for epigenetic reprogramming. J Biol Chem 279: 52353-52360.
-
(2004)
J Biol Chem
, vol.279
, pp. 52353-52360
-
-
Morgan, H.D.1
Dean, W.2
Coker, H.A.3
Reik, W.4
Petersen-Mahrt, S.K.5
-
68
-
-
17444409344
-
Epi-genetic reprogramming in mammals
-
No
-
Morgan HD, Santos F, Green K, Dean W, Reik W. 2005. Epi-genetic reprogramming in mammals. Hum Mol Genet 14 Spec No 1: R47-R58.
-
(2005)
Hum Mol Genet 14 Spec
, vol.1
-
-
Morgan, H.D.1
Santos, F.2
Green, K.3
Dean, W.4
Reik, W.5
-
69
-
-
42549096814
-
PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis
-
Mosher RA, Schwach F, Studholme D, Baulcombe DC. 2008. PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis. Proc Natl Acad Sci 105: 3145-3150.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 3145-3150
-
-
Mosher, R.A.1
Schwach, F.2
Studholme, D.3
Baulcombe, D.C.4
-
70
-
-
0034268780
-
Class switch recombination and hypermuta-tion require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme
-
Muramatsu M, Kinoshita K, Fagarasan S, Yamada S, Shinkai Y, Honjo T. 2000. Class switch recombination and hypermuta-tion require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme. Cell 102: 553-563.
-
(2000)
Cell
, vol.102
, pp. 553-563
-
-
Muramatsu, M.1
Kinoshita, K.2
Fagarasan, S.3
Yamada, S.4
Shinkai, Y.5
Honjo, T.6
-
71
-
-
33845885282
-
PGC7/Stella protects against DNA demethylation in early embryogenesis
-
Nakamura T, Arai Y, Umehara H, Masuhara M, Kimura T, Taniguchi H, Sekimoto T, Ikawa M, Yoneda Y, Okabe M, et al. 2007. PGC7/Stella protects against DNA demethylation in early embryogenesis. Nat Cell Biol 9: 64-71.
-
(2007)
Nat Cell Biol
, vol.9
, pp. 64-71
-
-
Nakamura, T.1
Arai, Y.2
Umehara, H.3
Masuhara, M.4
Kimura, T.5
Taniguchi, H.6
Sekimoto, T.7
Ikawa, M.8
Yoneda, Y.9
Okabe, M.10
-
72
-
-
84859265962
-
Active DNA demethylation by Gadd45 and DNA repair
-
Niehrs C, Schäfer A. 2012. Active DNA demethylation by Gadd45 and DNA repair. Trends Cell Biol 22: 220-227.
-
(2012)
Trends Cell Biol
, vol.22
, pp. 220-227
-
-
Niehrs, C.1
Schäfer, A.2
-
74
-
-
75749142980
-
A role for the elongator complex in zygotic paternal genome demethylation
-
Okada Y, Yamagata K, Hong K, Wakayama T, Zhang Y.2010. A role for the elongator complex in zygotic paternal genome demethylation. Nature 463: 554-558.
-
(2010)
Nature
, vol.463
, pp. 554-558
-
-
Okada, Y.1
Yamagata, K.2
Hong, K.3
Wakayama, T.4
Zhang, Y.5
-
75
-
-
0031279892
-
The pre-implantation ontogeny of the H19 methylation imprint
-
Olek A, Walter J. 1997. The pre-implantation ontogeny of the H19 methylation imprint. Nat Genet 17: 275-276.
-
(1997)
Nat Genet
, vol.17
, pp. 275-276
-
-
Olek, A.1
Walter, J.2
-
76
-
-
34547725157
-
DNMT3 L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA
-
Ooi SK, Qiu C, Bernstein E, Li K, Jia D, Yang Z, Erdjument-Bromage H, Tempst P, Lin SP, Allis CD, et al. 2007. DNMT3 L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA. Nature 448: 714-717.
-
(2007)
Nature
, vol.448
, pp. 714-717
-
-
Ooi, S.K.1
Qiu, C.2
Bernstein, E.3
Li, K.4
Jia, D.5
Yang, Z.6
Erdjument-Bromage, H.7
Tempst, P.8
Lin, S.P.9
Allis, C.D.10
-
77
-
-
0033566129
-
The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins
-
Orphanides G, Wu WH, Lane WS, Hampsey M, Reinberg D. 1999. The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins. Nature 400: 284-288.
-
(1999)
Nature
, vol.400
, pp. 284-288
-
-
Orphanides, G.1
Wu, W.H.2
Lane, W.S.3
Hampsey, M.4
Reinberg, D.5
-
78
-
-
0034176639
-
Active demethylation of the paternal genome in the mouse zygote
-
Oswald J, Engemann S, Lane N, Mayer W, Olek A, Fundele R, Dean W, Reik W, Walter J. 2000. Active demethylation of the paternal genome in the mouse zygote. Curr Biol 10: 475-478.
-
(2000)
Curr Biol
, vol.10
, pp. 475-478
-
-
Oswald, J.1
Engemann, S.2
Lane, N.3
Mayer, W.4
Olek, A.5
Fundele, R.6
Dean, W.7
Reik, W.8
Walter, J.9
-
79
-
-
79956308473
-
Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells
-
Pastor WA, Pape UJ, Huang Y, Henderson HR, Lister R, Ko M, McLoughlin EM, Brudno Y, Mahapatra S, Kapranov P, et al. 2011. Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells. Nature 473: 394-397.
-
(2011)
Nature
, vol.473
, pp. 394-397
-
-
Pastor, W.A.1
Pape, U.J.2
Huang, Y.3
Henderson, H.R.4
Lister, R.5
Ko, M.6
McLoughlin, E.M.7
Brudno, Y.8
Mahapatra, S.9
Kapranov, P.10
-
80
-
-
34249853277
-
DNA demethylation in the Arabidopsis genome
-
Penterman J, Zilberman D, Huh JH, Ballinger T, Henikoff S, Fischer RL. 2007. DNA demethylation in the Arabidopsis genome. Proc Natl Acad Sci 104: 6752-6757.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 6752-6757
-
-
Penterman, J.1
Zilberman, D.2
Huh, J.H.3
Ballinger, T.4
Henikoff, S.5
Fischer, R.L.6
-
81
-
-
77954938544
-
Methylation-independent DNA binding modulates specificity of Repressor of Silencing 1 (ROS1) and facilitates demethylation in long substrates
-
Ponferrada-Marín MI, Martínez-Macías MI, Morales-Ruiz T, Roldán-Arjona T, Ariza RR. 2010. Methylation-independent DNA binding modulates specificity of Repressor of Silencing 1 (ROS1) and facilitates demethylation in long substrates. J Biol Chem 285: 23032-23039.
-
(2010)
J Biol Chem
, vol.285
, pp. 23032-23039
-
-
Ponferrada-Marín, M.I.1
Martínez-Macías, M.I.2
Morales-Ruiz, T.3
Roldán-Arjona, T.4
Ariza, R.R.5
-
83
-
-
77249148019
-
Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency
-
Popp C, Dean W, Feng S, Cokus SJ, Andrews S, Pellegrini M, Jacobsen SE, Reik W. 2010. Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency. Nature 463: 1101-1105.
-
(2010)
Nature
, vol.463
, pp. 1101-1105
-
-
Popp, C.1
Dean, W.2
Feng, S.3
Cokus, S.J.4
Andrews, S.5
Pellegrini, M.6
Jacobsen, S.E.7
Reik, W.8
-
84
-
-
84862298246
-
A histone acetyltransferase regulates active DNA demethylation in Arabidopsis
-
Qian W, Miki D, Zhang H, Liu Y, Zhang X, Tang K, Kan Y, La H, Li X, Li S, et al. 2012. A histone acetyltransferase regulates active DNA demethylation in Arabidopsis. Science 336: 1445-1448.
-
(2012)
Science
, vol.336
, pp. 1445-1448
-
-
Qian, W.1
Miki, D.2
Zhang, H.3
Liu, Y.4
Zhang, X.5
Tang, K.6
Kan, Y.7
La, H.8
Li, X.9
Li, S.10
-
85
-
-
57649196594
-
DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45
-
Rai K, Huggins IJ, James SR, Karpf AR, Jones DA, Cairns BR. 2008. DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45. Cell 135: 1201-1212.
-
(2008)
Cell
, vol.135
, pp. 1201-1212
-
-
Rai, K.1
Huggins, I.J.2
James, S.R.3
Karpf, A.R.4
Jones, D.A.5
Cairns, B.R.6
-
86
-
-
0034625064
-
Non-CpG methylation is prevalent in embryonic stem cells and maybemediated by DNA methyltrans-ferase 3a
-
Ramsahoye BH, Biniszkiewicz D, Lyko F, Clark V, Bird AP, Jaenisch R. 2000. Non-CpG methylation is prevalent in embryonic stem cells and maybemediated by DNA methyltrans-ferase 3a. Proc Natl Acad Sci 97: 5237-5242.
-
(2000)
Proc Natl Acad Sci
, vol.97
, pp. 5237-5242
-
-
Ramsahoye, B.H.1
Biniszkiewicz, D.2
Lyko, F.3
Clark, V.4
Bird, A.P.5
Jaenisch, R.6
-
87
-
-
34548458560
-
Maintenance of paternal methylation and repression of the imprinted H19 gene requires MBD3
-
Reese KJ, Lin S, Verona RI, Schultz RM, Bartolomei MS. 2007. Maintenance of paternal methylation and repression of the imprinted H19 gene requires MBD3. PLoS Genet 3: e137.
-
(2007)
PLoS Genet
, vol.3
-
-
Reese, K.J.1
Lin, S.2
Verona, R.I.3
Schultz, R.M.4
Bartolomei, M.S.5
-
88
-
-
0032528255
-
Chromosome methyla-tion patterns during mammalian preimplantation development
-
Rougier N, Bourc'his D, Gomes DM, Niveleau A, Plachot M, Pàldi A, Viegas-Péquignot E. 1998. Chromosome methyla-tion patterns during mammalian preimplantation development. Genes Dev 12: 2108-2113.
-
(1998)
Genes Dev
, vol.12
, pp. 2108-2113
-
-
Rougier, N.1
Bourc'his, D.2
Gomes, D.M.3
Niveleau, A.4
Plachot, M.5
Pàldi, A.6
Viegas-Péquignot, E.7
-
89
-
-
0036145567
-
Dynamic repro-gramming of DNA methylation in the early mouse embryo
-
Santos F, Hendrich B, Reik W, Dean W. 2002. Dynamic repro-gramming of DNA methylation in the early mouse embryo. Dev Biol 241: 172-182.
-
(2002)
Dev Biol
, vol.241
, pp. 172-182
-
-
Santos, F.1
Hendrich, B.2
Reik, W.3
Dean, W.4
-
90
-
-
38549116060
-
Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana
-
Saze H, Shiraishi A, Miura A, Kakutani T. 2008. Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana. Science 319: 462-465.
-
(2008)
Science
, vol.319
, pp. 462-465
-
-
Saze, H.1
Shiraishi, A.2
Miura, A.3
Kakutani, T.4
-
91
-
-
16244362244
-
A gene expression map of Arabidopsis thaliana development
-
Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, Vingron M, Schölkopf B, Weigel D, Lohmann JU. 2005. A gene expression map of Arabidopsis thaliana development. Nat Genet 37: 501-506.
-
(2005)
Nat Genet
, vol.37
, pp. 501-506
-
-
Schmid, M.1
Davison, T.S.2
Henz, S.R.3
Pape, U.J.4
Demar, M.5
Vingron, M.6
Schölkopf, B.7
Weigel, D.8
Lohmann, J.U.9
-
92
-
-
79956347772
-
Function of the DEMETER DNA glycosylase in the Arabidopsis thaliana male gametophyte
-
Schoft VK, Chumak N, Choi Y, Hannon M, Garcia-Aguilar M, Machlicova A, Slusarz L, Mosiolek M, Park JS, Park GT, et al. 2011. Function of the DEMETER DNA glycosylase in the Arabidopsis thaliana male gametophyte. Proc Natl Acad Sci 108: 8042-8047.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 8042-8047
-
-
Schoft, V.K.1
Chumak, N.2
Choi, Y.3
Hannon, M.4
Garcia-Aguilar, M.5
Machlicova, A.6
Slusarz, L.7
Mosiolek, M.8
Park, J.S.9
Park, G.T.10
-
93
-
-
0037663448
-
Drosophila FACT contributesto Hox gene expression through physical and functional interactions with GAGA factor
-
Shimojima T, Okada M, Nakayama T, Ueda H, Okawa K, Iwamatsu A, Handa H, Hirose S. 2003. Drosophila FACT contributesto Hox gene expression through physical and functional interactions with GAGA factor. Genes Dev 17: 1605-1616.
-
(2003)
Genes Dev
, vol.17
, pp. 1605-1616
-
-
Shimojima, T.1
Okada, M.2
Nakayama, T.3
Ueda, H.4
Okawa, K.5
Iwamatsu, A.6
Handa, H.7
Hirose, S.8
-
94
-
-
59349118366
-
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
-
Slotkin RK, Vaughn M, Borges F, Tanurdzić M, Becker JD, Feijó JA, Martienssen RA. 2009. Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell 136: 461-472.
-
(2009)
Cell
, vol.136
, pp. 461-472
-
-
Slotkin, R.K.1
Vaughn, M.2
Borges, F.3
Tanurdzić, M.4
Becker, J.D.5
Feijó, J.A.6
Martienssen, R.A.7
-
95
-
-
43749098985
-
DNA methylation landscapes: Provocative insights from epigenomics
-
Suzuki MM, Bird A. 2008. DNA methylation landscapes: Provocative insights from epigenomics. Nat Rev Genet 9: 465-476.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 465-476
-
-
Suzuki, M.M.1
Bird, A.2
-
96
-
-
84861968669
-
TGF-b-dependent active demeth-ylation and expression of the p15(ink4b) tumor suppressor are impaired by the ZNF217/CoREST complex
-
Thillainadesan G, Chitilian JM, Isovic M, Ablack JN, Mymryk JS, Tini M, Torchia J. 2012. TGF-b-dependent active demeth-ylation and expression of the p15(ink4b) tumor suppressor are impaired by the ZNF217/CoREST complex. Mol Cell 46: 636-649.
-
(2012)
Mol Cell
, vol.46
, pp. 636-649
-
-
Thillainadesan, G.1
Chitilian, J.M.2
Isovic, M.3
Ablack, J.N.4
Mymryk, J.S.5
Tini, M.6
Torchia, J.7
-
97
-
-
0036184090
-
Association of CBP/p300 acetylase and thymine DNA glycosylase links DNA repair and transcription
-
Tini M, Benecke A, Um SJ, Torchia J, Evans RM, Chambon P. 2002. Association of CBP/p300 acetylase and thymine DNA glycosylase links DNA repair and transcription. Mol Cell 9: 265-277.
-
(2002)
Mol Cell
, vol.9
, pp. 265-277
-
-
Tini, M.1
Benecke, A.2
Um, S.J.3
Torchia, J.4
Evans, R.M.5
Chambon, P.6
-
98
-
-
0032516887
-
Retinoic acid receptors interact physically and functionally with the T:G mismatch-specific thymine-DNA glycosy-lase
-
Um S, Harbers M, Benecke A, Pierrat B, Losson R, Chambon P. 1998. Retinoic acid receptors interact physically and functionally with the T:G mismatch-specific thymine-DNA glycosy-lase. J Biol Chem 273: 20728-20736.
-
(1998)
J Biol Chem
, vol.273
, pp. 20728-20736
-
-
Um, S.1
Harbers, M.2
Benecke, A.3
Pierrat, B.4
Losson, R.5
Chambon, P.6
-
99
-
-
33847055935
-
Endogenous cytosine damage products alter the site selectivity of human DNA maintenance methyltransferase DNMT1
-
Valinluck V, Sowers LC. 2007. Endogenous cytosine damage products alter the site selectivity of human DNA maintenance methyltransferase DNMT1. Cancer Res 67: 946-950.
-
(2007)
Cancer Res
, vol.67
, pp. 946-950
-
-
Valinluck, V.1
Sowers, L.C.2
-
101
-
-
79956052873
-
Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus
-
Watanabe T, Tomizawa S, Mitsuya K, Totoki Y, Yamamoto Y, Kuramochi-Miyagawa S, Iida N, Hoki Y, Murphy PJ, Toyoda A, et al. 2011. Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus. Science 332: 848-852.
-
(2011)
Science
, vol.332
, pp. 848-852
-
-
Watanabe, T.1
Tomizawa, S.2
Mitsuya, K.3
Totoki, Y.4
Yamamoto, Y.5
Kuramochi-Miyagawa, S.6
Iida, N.7
Hoki, Y.8
Murphy, P.J.9
Toyoda, A.10
-
102
-
-
84555189745
-
DNA methylation: TET proteins-guardians of CpG islands?
-
Williams K, Christensen J, Helin K. 2011. DNA methylation: TET proteins-guardians of CpG islands? EMBO Rep 13: 28-35.
-
(2011)
EMBO Rep
, vol.13
, pp. 28-35
-
-
Williams, K.1
Christensen, J.2
Helin, K.3
-
103
-
-
77956095231
-
Active DNA demethylation: Many roads lead to Rome
-
Wu SC, Zhang Y. 2010. Active DNA demethylation: Many roads lead to Rome. Nat Rev Mol Cell Biol 11: 607-620.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 607-620
-
-
Wu, S.C.1
Zhang, Y.2
-
104
-
-
33847275530
-
Nuclear reprogramming of cloned embryos and its implications for therapeutic cloning
-
Yang X, Smith SL, Tian XC, Lewin HA, Renard JP, Wakayama T. 2007. Nuclear reprogramming of cloned embryos and its implications for therapeutic cloning. Nat Genet 39: 295-302.
-
(2007)
Nat Genet
, vol.39
, pp. 295-302
-
-
Yang, X.1
Smith, S.L.2
Tian, X.C.3
Lewin, H.A.4
Renard, J.P.5
Wakayama, T.6
-
105
-
-
79955120337
-
RNA-directed DNA methylation
-
Zhang H, Zhu JK. 2011. RNA-directed DNA methylation. Curr Opin Plant Biol 14: 142-147.
-
(2011)
Curr Opin Plant Biol
, vol.14
, pp. 142-147
-
-
Zhang, H.1
Zhu, J.K.2
-
106
-
-
33748629119
-
Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis
-
Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, et al. 2006. Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis. Cell 126: 1189-1201.
-
(2006)
Cell
, vol.126
, pp. 1189-1201
-
-
Zhang, X.1
Yazaki, J.2
Sundaresan, A.3
Cokus, S.4
Chan, S.W.5
Chen, H.6
Henderson, I.R.7
Shinn, P.8
Pellegrini, M.9
Jacobsen, S.E.10
-
107
-
-
84862776719
-
Thymine DNA glycosylase specifically recognizes 5-carboxylcytosine-modified DNA
-
Zhang L, Lu X, Lu J, Liang H, Dai Q, Xu GL, Luo C, Jiang H, He C. 2012. Thymine DNA glycosylase specifically recognizes 5-carboxylcytosine-modified DNA. Nat Chem Biol 8: 328-330.
-
(2012)
Nat Chem Biol
, vol.8
, pp. 328-330
-
-
Zhang, L.1
Lu, X.2
Lu, J.3
Liang, H.4
Dai, Q.5
Xu, G.L.6
Luo, C.7
Jiang, H.8
He, C.9
-
108
-
-
55249089475
-
ROS3 is an RNA-binding protein required for DNA demethylation in Arabidop-sis
-
Zheng X, Pontes O, Zhu J, Miki D, Zhang F, Li WX, Iida K, Kapoor A, Pikaard CS, Zhu JK. 2008. ROS3 is an RNA-binding protein required for DNA demethylation in Arabidop-sis. Nature 455: 1259-1262.
-
(2008)
Nature
, vol.455
, pp. 1259-1262
-
-
Zheng, X.1
Pontes, O.2
Zhu, J.3
Miki, D.4
Zhang, F.5
Li, W.X.6
Iida, K.7
Kapoor, A.8
Pikaard, C.S.9
Zhu, J.K.10
-
109
-
-
73349104113
-
Active DNA demethylation mediated by DNA glycosylases
-
Zhu JK. 2009. Active DNA demethylation mediated by DNA glycosylases. Annu Rev Genet 43: 143-166.
-
(2009)
Annu Rev Genet
, vol.43
, pp. 143-166
-
-
Zhu, J.K.1
-
110
-
-
0034625141
-
5-methylcytosine-DNA glycosylase activity is present in a cloned G/T mismatch DNA glycosyl-ase associated with the chicken embryo DNA demethylation complex
-
Zhu B, Zheng Y, Hess D, Angliker H, Schwarz S, Siegmann M, Thiry S, Jost JP. 2000a. 5-methylcytosine-DNA glycosylase activity is present in a cloned G/T mismatch DNA glycosyl-ase associated with the chicken embryo DNA demethylation complex. Proc Natl Acad Sci 97: 5135-5139.
-
(2000)
Proc Natl Acad Sci
, vol.97
, pp. 5135-5139
-
-
Zhu, B.1
Zheng, Y.2
Hess, D.3
Angliker, H.4
Schwarz, S.5
Siegmann, M.6
Thiry, S.7
Jost, J.P.8
-
111
-
-
0034326849
-
5-Methylcytosine DNA glycosylase activity is also present in the human MBD4 (G/T mismatch glycosylase) and in a related avian sequence
-
Zhu B, Zheng Y, Angliker H, Schwarz S, Thiry S, Siegmann M, Jost JP. 2000b. 5-Methylcytosine DNA glycosylase activity is also present in the human MBD4 (G/T mismatch glycosylase) and in a related avian sequence. Nucleic Acids Res 28: 4157-4165.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 4157-4165
-
-
Zhu, B.1
Zheng, Y.2
Angliker, H.3
Schwarz, S.4
Thiry, S.5
Siegmann, M.6
Jost, J.P.7
-
112
-
-
0035942193
-
Overexpression of 5-methylcytosine DNA glycosylase in human embryonic kidney cells EcR293 de-methylates the promoter of a hormone-regulated reporter gene
-
Zhu B, Benjamin D, Zheng Y, Angliker H, Thiry S, Siegmann M, Jost JP. 2001. Overexpression of 5-methylcytosine DNA glycosylase in human embryonic kidney cells EcR293 de-methylates the promoter of a hormone-regulated reporter gene. Proc Natl Acad Sci 98: 5031-5036.
-
(2001)
Proc Natl Acad Sci
, vol.98
, pp. 5031-5036
-
-
Zhu, B.1
Benjamin, D.2
Zheng, Y.3
Angliker, H.4
Thiry, S.5
Siegmann, M.6
Jost, J.P.7
-
113
-
-
33845866061
-
The DNA glycosylase/lyase ROS1 functions in pruning DNA methyl-ation patterns in Arabidopsis
-
Zhu J, Kapoor A, Sridhar VV, Agius F, Zhu JK. 2007. The DNA glycosylase/lyase ROS1 functions in pruning DNA methyl-ation patterns in Arabidopsis. Curr Biol 17: 54-59.
-
(2007)
Curr Biol
, vol.17
, pp. 54-59
-
-
Zhu, J.1
Kapoor, A.2
Sridhar, V.V.3
Agius, F.4
Zhu, J.K.5
|