-
1
-
-
0033059981
-
Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis
-
Zhao J, Hyman L, Moore C. 1999. Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis. Microbiol. Mol. Biol. Rev. 63:405-445.
-
(1999)
Microbiol. Mol. Biol. Rev.
, vol.63
, pp. 405-445
-
-
Zhao, J.1
Hyman, L.2
Moore, C.3
-
2
-
-
59649122202
-
Molecular architecture of the human pre-mRNA 3' processing complex
-
Shi Y, Di Giammartino DC, Taylor D, Sarkeshik A, Rice WJ, Yates JR, III, Frank J, Manley JL. 2009. Molecular architecture of the human pre-mRNA 3' processing complex. Mol. Cell 33:365-376. http://dx.doi.org/10.1016/j.molcel.2008.12.028.
-
(2009)
Mol. Cell
, vol.33
, pp. 365-376
-
-
Shi, Y.1
Di Giammartino, D.C.2
Taylor, D.3
Sarkeshik, A.4
Rice, W.J.5
Yates III, J.R.6
Frank, J.7
Manley, J.L.8
-
3
-
-
42449084129
-
Protein factors in pre-mRNA 3'-end processing
-
Mandel CR, Bai Y, Tong L. 2008. Protein factors in pre-mRNA 3'-end processing. Cell. Mol. Life Sci. 65:1099-1122. http://dx.doi.org/10.1007/s00018-007-7474-3.
-
(2008)
Cell. Mol. Life Sci.
, vol.65
, pp. 1099-1122
-
-
Mandel, C.R.1
Bai, Y.2
Tong, L.3
-
4
-
-
60149110358
-
Pre-mRNA processing reaches back to transcription and ahead to translation
-
Moore MJ, Proudfoot NJ. 2009. Pre-mRNA processing reaches back to transcription and ahead to translation. Cell 136:688-700. http://dx.doi.org/10.1016/j.cell.2009.02.001.
-
(2009)
Cell
, vol.136
, pp. 688-700
-
-
Moore, M.J.1
Proudfoot, N.J.2
-
5
-
-
38949111543
-
3' end mRNA processing: molecular mechanisms and implications for health and disease
-
Danckwardt S, Hentze MW, Kulozik AE. 2008. 3' end mRNA processing: molecular mechanisms and implications for health and disease. EMBO J. 27:482-498. http://dx.doi.org/10.1038/sj.emboj.7601932.
-
(2008)
EMBO J.
, vol.27
, pp. 482-498
-
-
Danckwardt, S.1
Hentze, M.W.2
Kulozik, A.E.3
-
6
-
-
80052979140
-
Mechanisms and consequences of alternative polyadenylation
-
Di Giammartino DC, Nishida K, Manley JL. 2011. Mechanisms and consequences of alternative polyadenylation. Mol. Cell 43:853-866. http://dx.doi.org/10.1016/j.molcel.2011.08.017.
-
(2011)
Mol. Cell
, vol.43
, pp. 853-866
-
-
Di Giammartino, D.C.1
Nishida, K.2
Manley, J.L.3
-
7
-
-
84878151459
-
Alternative cleavage and polyadenylation: the long and short of it
-
Tian B, Manley JL. 2013. Alternative cleavage and polyadenylation: the long and short of it. Trends Biochem. Sci. 38:312-320. http://dx.doi.org/10.1016/j.tibs.2013.03.005.
-
(2013)
Trends Biochem. Sci.
, vol.38
, pp. 312-320
-
-
Tian, B.1
Manley, J.L.2
-
8
-
-
66049104920
-
Progressive lengthening of 3' untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development
-
Ji Z, Lee JY, Pan Z, Jiang B, Tian B. 2009. Progressive lengthening of 3' untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development. Proc. Natl. Acad. Sci. U. S. A. 106:7028-7033. http://dx.doi.org/10.1073/pnas.0900028106.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 7028-7033
-
-
Ji, Z.1
Lee, J.Y.2
Pan, Z.3
Jiang, B.4
Tian, B.5
-
9
-
-
68749113985
-
Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells
-
Mayr C, Bartel DP. 2009. Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells. Cell 138:673-684. http://dx.doi.org/10.1016/j.cell.2009.06.016.
-
(2009)
Cell
, vol.138
, pp. 673-684
-
-
Mayr, C.1
Bartel, D.P.2
-
10
-
-
46249092601
-
Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites
-
Sandberg R, Neilson JR, Sarma A, Sharp PA, Burge CB. 2008. Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites. Science 320:1643-1647. http://dx.doi.org/10.1126/science.1155390.
-
(2008)
Science
, vol.320
, pp. 1643-1647
-
-
Sandberg, R.1
Neilson, J.R.2
Sarma, A.3
Sharp, P.A.4
Burge, C.B.5
-
11
-
-
0030784958
-
Mechanism and regulation of mRNA polyadenylation
-
Colgan DF, Manley JL. 1997. Mechanism and regulation of mRNA polyadenylation. Genes Dev. 11:2755-2766. http://dx.doi.org/10.1101/gad.11.21.2755.
-
(1997)
Genes Dev.
, vol.11
, pp. 2755-2766
-
-
Colgan, D.F.1
Manley, J.L.2
-
12
-
-
80052447253
-
Ending the message: poly(A) signals then and now
-
Proudfoot NJ. 2011. Ending the message: poly(A) signals then and now. Genes Dev. 25:1770-1782. http://dx.doi.org/10.1101/gad.17268411.
-
(2011)
Genes Dev.
, vol.25
, pp. 1770-1782
-
-
Proudfoot, N.J.1
-
13
-
-
84857743195
-
Structural biology of poly(A) site definition
-
Yang Q, Doublié S. 2011. Structural biology of poly(A) site definition. Wiley Interdiscip. Rev. RNA 2:732-747. http://dx.doi.org/10.1002/wrna.88.
-
(2011)
Wiley Interdiscip. Rev. RNA
, vol.2
, pp. 732-747
-
-
Yang, Q.1
Doublié, S.2
-
14
-
-
0025029405
-
Point mutations in AAUAAA and the poly(A) addition site: effects on the accuracy and efficiency of cleavage and polyadenylation in vitro
-
Sheets MD, Ogg SC, Wickens MP. 1990. Point mutations in AAUAAA and the poly(A) addition site: effects on the accuracy and efficiency of cleavage and polyadenylation in vitro. Nucleic Acids Res. 18:5799-5805. http://dx.doi.org/10.1093/nar/18.19.5799.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 5799-5805
-
-
Sheets, M.D.1
Ogg, S.C.2
Wickens, M.P.3
-
15
-
-
0033858202
-
Patterns of variant polyadenylation signal usage in human genes
-
Beaudoing E, Freier S, Wyatt JR, Claverie JM, Gautheret D. 2000. Patterns of variant polyadenylation signal usage in human genes. Genome Res. 10:1001-1010. http://dx.doi.org/10.1101/gr.10.7.1001.
-
(2000)
Genome Res.
, vol.10
, pp. 1001-1010
-
-
Beaudoing, E.1
Freier, S.2
Wyatt, J.R.3
Claverie, J.M.4
Gautheret, D.5
-
16
-
-
25844497003
-
Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation
-
Hu J, Lutz CS, Wilusz J, Tian B. 2005. Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation. RNA 11:1485-1493. http://dx.doi.org/10.1261/rna.2107305.
-
(2005)
RNA
, vol.11
, pp. 1485-1493
-
-
Hu, J.1
Lutz, C.S.2
Wilusz, J.3
Tian, B.4
-
17
-
-
0035870688
-
Heterogeneity in polyadenylation cleavage sites in mammalian mRNA sequences: implications for SAGE analysis
-
Pauws E, van Kampen AH, van de Graaf SA, de Vijlder JJ, Ris-Stalpers C. 2001. Heterogeneity in polyadenylation cleavage sites in mammalian mRNA sequences: implications for SAGE analysis. Nucleic Acids Res. 29:1690-1694. http://dx.doi.org/10.1093/nar/29.8.1690.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1690-1694
-
-
Pauws, E.1
Van Kampen, A.H.2
Van de Graaf, S.A.3
de Vijlder, J.J.4
Ris-Stalpers, C.5
-
18
-
-
0028025647
-
The 64-kilodalton subunit of the CstF polyadenylation factor binds to pre-mRNAs downstream of the cleavage site and influences cleavage site location
-
MacDonald CC, Wilusz J, Shenk T. 1994. The 64-kilodalton subunit of the CstF polyadenylation factor binds to pre-mRNAs downstream of the cleavage site and influences cleavage site location. Mol. Cell. Biol. 14: 6647-6654.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 6647-6654
-
-
MacDonald, C.C.1
Wilusz, J.2
Shenk, T.3
-
19
-
-
0022249619
-
Definition of essential sequences and functional equivalence of elements downstream of the adenovirus E2A and the early simian virus 40 polyadenylation sites
-
Hart RP, McDevitt MA, Ali H, Nevins JR. 1985. Definition of essential sequences and functional equivalence of elements downstream of the adenovirus E2A and the early simian virus 40 polyadenylation sites. Mol. Cell. Biol. 5:2975-2983.
-
(1985)
Mol. Cell. Biol.
, vol.5
, pp. 2975-2983
-
-
Hart, R.P.1
McDevitt, M.A.2
Ali, H.3
Nevins, J.R.4
-
20
-
-
0022431870
-
The consensus sequence YGTGTTYY located downstream from the AATAAA signal is required for efficient formation of mRNA 3' termini
-
McLauchlan J, Gaffney D, Whitton JL, Clements JB. 1985. The consensus sequence YGTGTTYY located downstream from the AATAAA signal is required for efficient formation of mRNA 3' termini. Nucleic Acids Res. 13:1347-1368. http://dx.doi.org/10.1093/nar/13.4.1347.
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 1347-1368
-
-
McLauchlan, J.1
Gaffney, D.2
Whitton, J.L.3
Clements, J.B.4
-
21
-
-
0028356057
-
Sequence and position requirements for uridylate-rich downstream elements of polyadenylation signals
-
Chou ZF, Chen F, Wilusz J. 1994. Sequence and position requirements for uridylate-rich downstream elements of polyadenylation signals. Nucleic Acids Res. 22:2525-2531. http://dx.doi.org/10.1093/nar/22.13.2525.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 2525-2531
-
-
Chou, Z.F.1
Chen, F.2
Wilusz, J.3
-
22
-
-
0023647927
-
Position-dependent sequence elements downstream of AAUAAA are required for efficient rabbit beta-globin mRNA 3' end formation
-
Gil A, Proudfoot NJ. 1987. Position-dependent sequence elements downstream of AAUAAA are required for efficient rabbit beta-globin mRNA 3' end formation. Cell 49:399-406. http://dx.doi.org/10.1016/0092-8674(87)90292-3.
-
(1987)
Cell
, vol.49
, pp. 399-406
-
-
Gil, A.1
Proudfoot, N.J.2
-
23
-
-
22344439263
-
Analysis of a noncanonical poly(A) site reveals a tripartite mechanism for vertebrate poly(A) site recognition
-
Venkataraman K, Brown KM, Gilmartin GM. 2005. Analysis of a noncanonical poly(A) site reveals a tripartite mechanism for vertebrate poly(A) site recognition. Genes Dev. 19:1315-1327. http://dx.doi.org/10.1101/gad.1298605.
-
(2005)
Genes Dev.
, vol.19
, pp. 1315-1327
-
-
Venkataraman, K.1
Brown, K.M.2
Gilmartin, G.M.3
-
24
-
-
0028290472
-
Flexibility and interchangeability of polyadenylation signals in Saccharomyces cerevisiae
-
Heidmann S, Schindewolf C, Stumpf G, Domdey H. 1994. Flexibility and interchangeability of polyadenylation signals in Saccharomyces cerevisiae. Mol. Cell. Biol. 14:4633-4642.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 4633-4642
-
-
Heidmann, S.1
Schindewolf, C.2
Stumpf, G.3
Domdey, H.4
-
25
-
-
0028818260
-
3'-end-forming signals of yeast mRNA
-
Guo Z, Sherman F. 1995. 3'-end-forming signals of yeast mRNA. Mol. Cell. Biol. 15:5983-5990.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 5983-5990
-
-
Guo, Z.1
Sherman, F.2
-
26
-
-
0035876112
-
Recognition of polyadenylation sites in yeast pre-mRNAs by cleavage and polyadenylation factor
-
Dichtl B, Keller W. 2001. Recognition of polyadenylation sites in yeast pre-mRNAs by cleavage and polyadenylation factor. EMBO J. 20:3197-3209. http://dx.doi.org/10.1093/emboj/20.12.3197.
-
(2001)
EMBO J.
, vol.20
, pp. 3197-3209
-
-
Dichtl, B.1
Keller, W.2
-
27
-
-
0033598805
-
In silico detection of control signals: mRNA 3'-end-processing sequences in diverse species
-
Graber JH, Cantor CR, Mohr SC, Smith TF. 1999. In silico detection of control signals: mRNA 3'-end-processing sequences in diverse species. Proc. Natl. Acad. Sci. U. S. A. 96:14055-14060. http://dx.doi.org/10.1073/pnas.96.24.14055.
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 14055-14060
-
-
Graber, J.H.1
Cantor, C.R.2
Mohr, S.C.3
Smith, T.F.4
-
28
-
-
0022098633
-
Accurate cleavage and polyadenylation of exogenous RNA substrate
-
Moore CL, Sharp PA. 1985. Accurate cleavage and polyadenylation of exogenous RNA substrate. Cell 41:845-855. http://dx.doi.org/10.1016/S0092-8674(85)80065-9.
-
(1985)
Cell
, vol.41
, pp. 845-855
-
-
Moore, C.L.1
Sharp, P.A.2
-
29
-
-
0024282810
-
3' cleavage and polyadenylation of mRNA precursors in vitro requires a poly(A) polymerase, a cleavage factor, and a snRNP
-
Christofori G, Keller W. 1988. 3' cleavage and polyadenylation of mRNA precursors in vitro requires a poly(A) polymerase, a cleavage factor, and a snRNP. Cell 54:875-889. http://dx.doi.org/10.1016/S0092-8674(88)91263-9.
-
(1988)
Cell
, vol.54
, pp. 875-889
-
-
Christofori, G.1
Keller, W.2
-
30
-
-
0024805402
-
An ordered pathway of assembly of components required for polyadenylation site recognition and processing
-
Gilmartin GM, Nevins JR. 1989. An ordered pathway of assembly of components required for polyadenylation site recognition and processing. Genes Dev. 3:2180-2190. http://dx.doi.org/10.1101/gad.3.12b.2180.
-
(1989)
Genes Dev.
, vol.3
, pp. 2180-2190
-
-
Gilmartin, G.M.1
Nevins, J.R.2
-
31
-
-
0024762583
-
Four factors are required for 3'-end cleavage of pre-mRNAs
-
Takagaki Y, Ryner LC, Manley JL. 1989. Four factors are required for 3'-end cleavage of pre-mRNAs. Genes Dev. 3:1711-1724. http://dx.doi.org/10.1101/gad.3.11.1711.
-
(1989)
Genes Dev.
, vol.3
, pp. 1711-1724
-
-
Takagaki, Y.1
Ryner, L.C.2
Manley, J.L.3
-
32
-
-
0025817865
-
A novel poly(A)-binding protein acts as a specificity factor in the second phase of messenger RNA polyadenylation
-
Wahle E. 1991. A novel poly(A)-binding protein acts as a specificity factor in the second phase of messenger RNA polyadenylation. Cell 66: 759-768. http://dx.doi.org/10.1016/0092-8674(91)90119-J.
-
(1991)
Cell
, vol.66
, pp. 759-768
-
-
Wahle, E.1
-
33
-
-
0031037856
-
The C-terminal domain of RNA polymerase II couples mRNA processing to transcription
-
McCracken S, Fong N, Yankulov K, Ballantyne S, Pan G, Greenblatt J, Patterson SD, Wickens M, Bentley DL. 1997. The C-terminal domain of RNA polymerase II couples mRNA processing to transcription. Nature 385:357-361. http://dx.doi.org/10.1038/385357a0.
-
(1997)
Nature
, vol.385
, pp. 357-361
-
-
McCracken, S.1
Fong, N.2
Yankulov, K.3
Ballantyne, S.4
Pan, G.5
Greenblatt, J.6
Patterson, S.D.7
Wickens, M.8
Bentley, D.L.9
-
34
-
-
0032480229
-
RNA polymerase II is an essential mRNA polyadenylation factor
-
Hirose Y, Manley JL. 1998. RNA polymerase II is an essential mRNA polyadenylation factor. Nature 395:93-96. http://dx.doi.org/10.1038/25786.
-
(1998)
Nature
, vol.395
, pp. 93-96
-
-
Hirose, Y.1
Manley, J.L.2
-
35
-
-
0033984159
-
Complex protein interactions within the human polyadenylation machinery identify a novel component
-
Takagaki Y, Manley JL. 2000. Complex protein interactions within the human polyadenylation machinery identify a novel component. Mol. Cell. Biol. 20:1515-1525. http://dx.doi.org/10.1128/MCB.20.5.1515-1525.2000.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 1515-1525
-
-
Takagaki, Y.1
Manley, J.L.2
-
36
-
-
0026009674
-
Purification of the cleavage and polyadenylation factor involved in the 3'-processing of messenger RNA precursors
-
Bienroth S, Wahle E, Suter-Crazzolara C, Keller W. 1991. Purification of the cleavage and polyadenylation factor involved in the 3'-processing of messenger RNA precursors. J. Biol. Chem. 266:19768-19776.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 19768-19776
-
-
Bienroth, S.1
Wahle, E.2
Suter-Crazzolara, C.3
Keller, W.4
-
37
-
-
0030798246
-
Transcription factor TFIID recruits factor CPSF for formation of 3' end of mRNA
-
Dantonel JC, Murthy KG, Manley JL, Tora L. 1997. Transcription factor TFIID recruits factor CPSF for formation of 3' end of mRNA. Nature 389:399-402. http://dx.doi.org/10.1038/38763.
-
(1997)
Nature
, vol.389
, pp. 399-402
-
-
Dantonel, J.C.1
Murthy, K.G.2
Manley, J.L.3
Tora, L.4
-
38
-
-
0026694636
-
Characterization of the multisubunit cleavage-polyadenylation specificity factor from calf thymus
-
Murthy KG, Manley JL. 1992. Characterization of the multisubunit cleavage-polyadenylation specificity factor from calf thymus. J. Biol. Chem. 267:14804-14811.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 14804-14811
-
-
Murthy, K.G.1
Manley, J.L.2
-
39
-
-
1442313922
-
Human Fip1 is a subunit of CPSF that binds to U-rich RNA elements and stimulates poly(A) polymerase
-
Kaufmann I, Martin G, Friedlein A, Langen H, Keller W. 2004. Human Fip1 is a subunit of CPSF that binds to U-rich RNA elements and stimulates poly(A) polymerase. EMBO J. 23:616-626. http://dx.doi.org/10.1038/sj.emboj.7600070.
-
(2004)
EMBO J.
, vol.23
, pp. 616-626
-
-
Kaufmann, I.1
Martin, G.2
Friedlein, A.3
Langen, H.4
Keller, W.5
-
40
-
-
84857746060
-
The hunt for the 3' endonuclease
-
Dominski Z. 2010. The hunt for the 3' endonuclease. Wiley Interdiscip. Rev. RNA 1:325-340. http://dx.doi.org/10.1002/wrna.33.
-
(2010)
Wiley Interdiscip. Rev. RNA
, vol.1
, pp. 325-340
-
-
Dominski, Z.1
-
41
-
-
0037102538
-
Metallobeta- lactamase fold within nucleic acids processing enzymes: the beta- CASP family
-
Callebaut I, Moshous D, Mornon J-P, de Villartay J-P. 2002. Metallobeta- lactamase fold within nucleic acids processing enzymes: the beta- CASP family. Nucleic Acids Res. 30:3592-3601. http://dx.doi.org/10.1093/nar/gkf470.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3592-3601
-
-
Callebaut, I.1
Moshous, D.2
Mornon, J.-P.3
de Villartay, J.-P.4
-
42
-
-
1642488290
-
Evidence that polyadenylation factor CPSF-73 is the mRNA 3' processing endonuclease
-
Ryan K, Calvo O, Manley JL. 2004. Evidence that polyadenylation factor CPSF-73 is the mRNA 3' processing endonuclease. RNA 10:565-573. http://dx.doi.org/10.1261/rna.5214404.
-
(2004)
RNA
, vol.10
, pp. 565-573
-
-
Ryan, K.1
Calvo, O.2
Manley, J.L.3
-
43
-
-
33845902048
-
Polyadenylation factor CPSF-73 is the pre-mRNA 3'-end-processing endonuclease
-
Mandel CR, Kaneko S, Zhang H, Gebauer D, Vethantham V, Manley JL, Tong L. 2006. Polyadenylation factor CPSF-73 is the pre-mRNA 3'-end-processing endonuclease. Nature 444:953-956. http://dx.doi.org/10.1038/nature05363.
-
(2006)
Nature
, vol.444
, pp. 953-956
-
-
Mandel, C.R.1
Kaneko, S.2
Zhang, H.3
Gebauer, D.4
Vethantham, V.5
Manley, J.L.6
Tong, L.7
-
45
-
-
77955794351
-
Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii
-
Nishida Y, Ishikawa H, Baba S, Nakagawa N, Kuramitsu S, Masui R. 2010. Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii. Proteins 78:2395-2398. http://dx.doi.org/10.1002/prot.22748.
-
(2010)
Proteins
, vol.78
, pp. 2395-2398
-
-
Nishida, Y.1
Ishikawa, H.2
Baba, S.3
Nakagawa, N.4
Kuramitsu, S.5
Masui, R.6
-
46
-
-
78649905057
-
Crystal structure of a dimeric archaeal cleavage and polyadenylation specificity factor
-
Mir-Montazeri B, Ammelburg M, Forouzan D, Lupas AN, Hartmann MD. 2011. Crystal structure of a dimeric archaeal cleavage and polyadenylation specificity factor. J. Struct. Biol. 173:191-195. http://dx.doi.org/10.1016/j.jsb.2010.09.013.
-
(2011)
J. Struct. Biol.
, vol.173
, pp. 191-195
-
-
Mir-Montazeri, B.1
Ammelburg, M.2
Forouzan, D.3
Lupas, A.N.4
Hartmann, M.D.5
-
47
-
-
79955860702
-
Structure and activity of a novel archaeal β-CASP protein with N-terminal KH domains
-
Silva APG, Chechik M, Byrne RT, Waterman DG, Ng CL, Dodson EJ, Koonin EV, Antson AA, Smits C. 2011. Structure and activity of a novel archaeal β-CASP protein with N-terminal KH domains. Structure 19: 622-632. http://dx.doi.org/10.1016/j.str.2011.03.002.
-
(2011)
Structure
, vol.19
, pp. 622-632
-
-
Silva, A.P.G.1
Chechik, M.2
Byrne, R.T.3
Waterman, D.G.4
Ng, C.L.5
Dodson, E.J.6
Koonin, E.V.7
Antson, A.A.8
Smits, C.9
-
48
-
-
53249132654
-
Conserved motifs in both CPSF73 and CPSF100 are required to assemble the active endonuclease for histone mRNA 3'-end maturation
-
Kolev NG, Yario TA, Benson E, Steitz JA. 2008. Conserved motifs in both CPSF73 and CPSF100 are required to assemble the active endonuclease for histone mRNA 3'-end maturation. EMBO Rep. 9:1013-1018. http://dx.doi.org/10.1038/embor.2008.146.
-
(2008)
EMBO Rep.
, vol.9
, pp. 1013-1018
-
-
Kolev, N.G.1
Yario, T.A.2
Benson, E.3
Steitz, J.A.4
-
49
-
-
0029852510
-
Sequence similarity between the 73-kilodalton protein of mammalian CPSF and a subunit of yeast polyadenylation factor I
-
Jenny A, Minvielle-Sebastia L, Preker PJ, Keller W. 1996. Sequence similarity between the 73-kilodalton protein of mammalian CPSF and a subunit of yeast polyadenylation factor I. Science 274:1514-1517. http://dx.doi.org/10.1126/science.274.5292.1514.
-
(1996)
Science
, vol.274
, pp. 1514-1517
-
-
Jenny, A.1
Minvielle-Sebastia, L.2
Preker, P.J.3
Keller, W.4
-
50
-
-
0242380645
-
The role of the yeast cleavage and polyadenylation factor subunit Ydh1p/Cft2p in pre-mRNA 3'-end formation
-
Kyburz A, Sadowski M, Dichtl B, Keller W. 2003. The role of the yeast cleavage and polyadenylation factor subunit Ydh1p/Cft2p in pre-mRNA 3'-end formation. Nucleic Acids Res. 31:3936-3945. http://dx.doi.org/10.1093/nar/gkg478.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3936-3945
-
-
Kyburz, A.1
Sadowski, M.2
Dichtl, B.3
Keller, W.4
-
51
-
-
0030789421
-
A multisubunit 3' end processing factor from yeast containing poly(A) polymerase and homologues of the subunits of mammalian cleavage and polyadenylation specificity factor
-
Preker PJ, Ohnacker M, Minvielle-Sebastia L, Keller W. 1997. A multisubunit 3' end processing factor from yeast containing poly(A) polymerase and homologues of the subunits of mammalian cleavage and polyadenylation specificity factor. EMBO J. 16:4727-4737. http://dx.doi.org/10.1093/emboj/16.15.4727.
-
(1997)
EMBO J.
, vol.16
, pp. 4727-4737
-
-
Preker, P.J.1
Ohnacker, M.2
Minvielle-Sebastia, L.3
Keller, W.4
-
52
-
-
0030964086
-
Cleavage factor II of Saccharomyces cerevisiae contains homologues to subunits of the mammalian cleavage/polyadenylation specificity factor and exhibits sequencespecific, ATP-dependent interaction with precursor RNA
-
Zhao J, Kessler MM, Moore CL. 1997. Cleavage factor II of Saccharomyces cerevisiae contains homologues to subunits of the mammalian cleavage/polyadenylation specificity factor and exhibits sequencespecific, ATP-dependent interaction with precursor RNA. J. Biol. Chem. 272:10831-10838. http://dx.doi.org/10.1074/jbc.272.16.10831.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 10831-10838
-
-
Zhao, J.1
Kessler, M.M.2
Moore, C.L.3
-
53
-
-
13444249745
-
A CPSF-73 homologue is required for cell cycle progression but not cell growth and interacts with a protein having features of CPSF-100
-
Dominski Z, Yang X-C, Purdy M, Wagner EJ, MarzluffWF. 2005. A CPSF-73 homologue is required for cell cycle progression but not cell growth and interacts with a protein having features of CPSF-100. Mol. Cell. Biol. 25:1489-1500. http://dx.doi.org/10.1128/MCB.25.4.1489-1500.2005.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 1489-1500
-
-
Dominski, Z.1
Yang, X.-C.2
Purdy, M.3
Wagner, E.J.4
Marzluff, W.F.5
-
54
-
-
34247157802
-
Nucleases of the metallo-beta-lactamase family and their role in DNA and RNA metabolism
-
Dominski Z. 2007. Nucleases of the metallo-beta-lactamase family and their role in DNA and RNA metabolism. Crit. Rev. Biochem. Mol. Biol. 42:67-93. http://dx.doi.org/10.1080/10409230701279118.
-
(2007)
Crit. Rev. Biochem. Mol. Biol.
, vol.42
, pp. 67-93
-
-
Dominski, Z.1
-
55
-
-
1842329727
-
The 30-kD subunit of mammalian cleavage and polyadenylation specificity factor and its yeast homolog are RNA-binding zinc finger proteins
-
Barabino SM, Hübner W, Jenny A, Minvielle-Sebastia L, Keller W. 1997. The 30-kD subunit of mammalian cleavage and polyadenylation specificity factor and its yeast homolog are RNA-binding zinc finger proteins. Genes Dev. 11:1703-1716. http://dx.doi.org/10.1101/gad.11.13.1703.
-
(1997)
Genes Dev.
, vol.11
, pp. 1703-1716
-
-
Barabino, S.M.1
Hübner, W.2
Jenny, A.3
Minvielle-Sebastia, L.4
Keller, W.5
-
56
-
-
0034679803
-
Distinct roles of two Yth1p domains in 3'-end cleavage and polyadenylation of yeast pre-mRNAs
-
Barabino SM, Ohnacker M, Keller W. 2000. Distinct roles of two Yth1p domains in 3'-end cleavage and polyadenylation of yeast pre-mRNAs. EMBO J. 19:3778-3787. http://dx.doi.org/10.1093/emboj/19.14.3778.
-
(2000)
EMBO J.
, vol.19
, pp. 3778-3787
-
-
Barabino, S.M.1
Ohnacker, M.2
Keller, W.3
-
57
-
-
4944256277
-
Structural basis for packaging the dimeric genome of Moloney murine leukaemia virus
-
D'Souza V, Summers MF. 2004. Structural basis for packaging the dimeric genome of Moloney murine leukaemia virus. Nature 431:586-590. http://dx.doi.org/10.1038/nature02944.
-
(2004)
Nature
, vol.431
, pp. 586-590
-
-
D'Souza, V.1
Summers, M.F.2
-
59
-
-
0028061671
-
Characterization of cleavage and polyadenylation specificity factor and cloning of its 100-kilodalton subunit
-
Jenny A, Hauri HP, Keller W. 1994. Characterization of cleavage and polyadenylation specificity factor and cloning of its 100-kilodalton subunit. Mol. Cell. Biol. 14:8183-8190.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 8183-8190
-
-
Jenny, A.1
Hauri, H.P.2
Keller, W.3
-
60
-
-
0037443968
-
Functional dissection of the zinc finger and flanking domains of the Yth1 cleavage/polyadenylation factor
-
Tacahashi Y, Helmling S, Moore CL. 2003. Functional dissection of the zinc finger and flanking domains of the Yth1 cleavage/polyadenylation factor. Nucleic Acids Res. 31:1744-1752. http://dx.doi.org/10.1093/nar/gkg265.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1744-1752
-
-
Tacahashi, Y.1
Helmling, S.2
Moore, C.L.3
-
61
-
-
0032086357
-
Influenza virus NS1 protein interacts with the cellular 30 kDa subunit of CPSF and inhibits 3'end formation of cellular pre-mRNAs
-
NemeroffME, Barabino SM, Li Y, Keller W, Krug RM. 1998. Influenza virus NS1 protein interacts with the cellular 30 kDa subunit of CPSF and inhibits 3'end formation of cellular pre-mRNAs. Mol. Cell 1:991-1000. http://dx.doi.org/10.1016/S1097-2765(00)80099-4.
-
(1998)
Mol. Cell
, vol.1
, pp. 991-1000
-
-
Nemeroff, M.E.1
Barabino, S.M.2
Li, Y.3
Keller, W.4
Krug, R.M.5
-
62
-
-
51349124912
-
Structural basis for suppression of a host antiviral response by influenza A virus
-
Das K, Ma L-C, Xiao R, Radvansky B, Aramini J, Zhao L, Marklund J, Kuo R-L, Twu KY, Arnold E, Krug RM, Montelione GT. 2008. Structural basis for suppression of a host antiviral response by influenza A virus. Proc. Natl. Acad. Sci. U. S. A. 105:13093-13098. http://dx.doi.org/10.1073/pnas.0805213105.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 13093-13098
-
-
Das, K.1
Ma, L.-C.2
Xiao, R.3
Radvansky, B.4
Aramini, J.5
Zhao, L.6
Marklund, J.7
Kuo, R.-L.8
Twu, K.Y.9
Arnold, E.10
Krug, R.M.11
Montelione, G.T.12
-
63
-
-
34447125198
-
The poly(A)-dependent transcriptional pause is mediated by CPSF acting on the body of the polymerase
-
Nag A, Narsinh K, Martinson HG. 2007. The poly(A)-dependent transcriptional pause is mediated by CPSF acting on the body of the polymerase. Nat. Struct. Mol. Biol. 14:662-669. http://dx.doi.org/10.1038/nsmb1253.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 662-669
-
-
Nag, A.1
Narsinh, K.2
Martinson, H.G.3
-
64
-
-
0034666340
-
PSI-BLAST searches using hidden Markov models of structural repeats: prediction of an unusual sliding DNA clamp and of beta-propellers in UV-damaged DNA-binding protein
-
Neuwald AF, Poleksic A. 2000. PSI-BLAST searches using hidden Markov models of structural repeats: prediction of an unusual sliding DNA clamp and of beta-propellers in UV-damaged DNA-binding protein. Nucleic Acids Res. 28:3570-3580. http://dx.doi.org/10.1093/nar/28.18.3570.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 3570-3580
-
-
Neuwald, A.F.1
Poleksic, A.2
-
65
-
-
33749535905
-
Molecular architecture and assembly of the DDB1-CUL4A ubiquitin ligase machinery
-
(Letter.)
-
Angers S, Li T, Yi X, MacCoss MJ, Moon RT, Zheng N. 2006. Molecular architecture and assembly of the DDB1-CUL4A ubiquitin ligase machinery. Nature 443:590-593. (Letter.) http://dx.doi.org/10.1038/nature05175.
-
(2006)
Nature
, vol.443
, pp. 590-593
-
-
Angers, S.1
Li, T.2
Yi, X.3
MacCoss, M.J.4
Moon, R.T.5
Zheng, N.6
-
66
-
-
57749198023
-
Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex
-
Scrima A, Konícková R, Czyzewski BK, Kawasaki Y, Jeffrey PD, Groisman R, Nakatani Y, Iwai S, Pavletich NP, Thomä NH. 2008. Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex. Cell 135:1213-1223. http://dx.doi.org/10.1016/j.cell.2008.10.045.
-
(2008)
Cell
, vol.135
, pp. 1213-1223
-
-
Scrima, A.1
Konícková, R.2
Czyzewski, B.K.3
Kawasaki, Y.4
Jeffrey, P.D.5
Groisman, R.6
Nakatani, Y.7
Iwai, S.8
Pavletich, N.P.9
Thomä, N.H.10
-
68
-
-
0026041206
-
Cleavage and polyadenylation factor CPF specifically interacts with the pre-mRNA 3' processing signal AAUAAA
-
Keller W, Bienroth S, Lang KM, Christofori G. 1991. Cleavage and polyadenylation factor CPF specifically interacts with the pre-mRNA 3' processing signal AAUAAA. EMBO J. 10:4241-4249.
-
(1991)
EMBO J.
, vol.10
, pp. 4241-4249
-
-
Keller, W.1
Bienroth, S.2
Lang, K.M.3
Christofori, G.4
-
69
-
-
0028789410
-
The 160-kD subunit of human cleavagepolyadenylation specificity factor coordinates pre-mRNA 3'-end formation
-
Murthy KG, Manley JL. 1995. The 160-kD subunit of human cleavagepolyadenylation specificity factor coordinates pre-mRNA 3'-end formation. Genes Dev. 9:2672-2683. http://dx.doi.org/10.1101/gad.9.21.2672.
-
(1995)
Genes Dev.
, vol.9
, pp. 2672-2683
-
-
Murthy, K.G.1
Manley, J.L.2
-
70
-
-
0036682601
-
Yhh1p/Cft1p directly links poly(A) site recognition and RNA polymerase II transcription termination
-
Dichtl B, Blank D, Sadowski M, Hübner W, Weiser S, Keller W. 2002. Yhh1p/Cft1p directly links poly(A) site recognition and RNA polymerase II transcription termination. EMBO J. 21:4125-4135. http://dx.doi.org/10.1093/emboj/cdf390.
-
(2002)
EMBO J.
, vol.21
, pp. 4125-4135
-
-
Dichtl, B.1
Blank, D.2
Sadowski, M.3
Hübner, W.4
Weiser, S.5
Keller, W.6
-
71
-
-
0028999657
-
The FIP1 gene encodes a component of a yeast pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase
-
Preker PJ, Lingner J, Minvielle-Sebastia L, Keller W. 1995. The FIP1 gene encodes a component of a yeast pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase. Cell 81:379-389. http://dx.doi.org/10.1016/0092-8674(95)90391-7.
-
(1995)
Cell
, vol.81
, pp. 379-389
-
-
Preker, P.J.1
Lingner, J.2
Minvielle-Sebastia, L.3
Keller, W.4
-
72
-
-
46049095239
-
Structure of yeast poly(A) polymerase in complex with a peptide from Fip1, an intrinsically disordered protein
-
Meinke G, Ezeokonkwo C, Balbo P, Stafford W, Moore C, Bohm A. 2008. Structure of yeast poly(A) polymerase in complex with a peptide from Fip1, an intrinsically disordered protein. Biochemistry 47:6859-6869. http://dx.doi.org/10.1021/bi800204k.
-
(2008)
Biochemistry
, vol.47
, pp. 6859-6869
-
-
Meinke, G.1
Ezeokonkwo, C.2
Balbo, P.3
Stafford, W.4
Moore, C.5
Bohm, A.6
-
73
-
-
33644848791
-
An Arabidopsis Fip1 homolog interacts withRNAand provides conceptual links with a number of other polyadenylation factor subunits
-
Forbes KP, Addepalli B, Hunt AG. 2006. An Arabidopsis Fip1 homolog interacts withRNAand provides conceptual links with a number of other polyadenylation factor subunits. J. Biol. Chem. 281:176-186. http://dx.doi.org/10.1074/jbc. M510964200.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 176-186
-
-
Forbes, K.P.1
Addepalli, B.2
Hunt, A.G.3
-
74
-
-
79953022064
-
A flexible linker region in Fip1 is needed for efficient mRNA polyadenylation
-
Ezeokonkwo C, Zhelkovsky A, Lee R, Bohm A, Moore CL. 2011. A flexible linker region in Fip1 is needed for efficient mRNA polyadenylation. RNA 17:652-664. http://dx.doi.org/10.1261/rna.2273111.
-
(2011)
RNA
, vol.17
, pp. 652-664
-
-
Ezeokonkwo, C.1
Zhelkovsky, A.2
Lee, R.3
Bohm, A.4
Moore, C.L.5
-
75
-
-
0037309985
-
Extended disordered proteins: targeting function with less scaffold
-
Gunasekaran K, Tsai C-J, Kumar S, Zanuy D, Nussinov R. 2003. Extended disordered proteins: targeting function with less scaffold. Trends Biochem. Sci. 28:81-85. http://dx.doi.org/10.1016/S0968-0004(03)00003-3.
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 81-85
-
-
Gunasekaran, K.1
Tsai, C.-J.2
Kumar, S.3
Zanuy, D.4
Nussinov, R.5
-
76
-
-
0034805281
-
A novel WD40 repeat protein, WDC146, highly expressed during spermatogenesis in a stage-specific manner
-
Ito S, Sakai A, Nomura T, Miki Y, Ouchida M, Sasaki J, Shimizu K. 2001. A novel WD40 repeat protein, WDC146, highly expressed during spermatogenesis in a stage-specific manner. Biochem. Biophys. Res. Commun. 280:656-663. http://dx.doi.org/10.1006/bbrc.2000.4163.
-
(2001)
Biochem. Biophys. Res. Commun.
, vol.280
, pp. 656-663
-
-
Ito, S.1
Sakai, A.2
Nomura, T.3
Miki, Y.4
Ouchida, M.5
Sasaki, J.6
Shimizu, K.7
-
77
-
-
0034602833
-
The W.D-repeat protein pfs2p bridges two essential factors within the yeast pre-mR.N.A 3'-end-processing complex.
-
Ohnacker M, Barabino SM, Preker PJ, Keller W. 2000. The WD-repeat protein pfs2p bridges two essential factors within the yeast pre-mRNA 3'-end-processing complex. EMBO J. 19:37-47. http://dx.doi.org/10.1093/emboj/19.1.37
-
(2000)
EMBOJ
, vol.19
, pp. 37-47
-
-
Ohnacker, M.1
Barabino, S.M.2
Preker, P.J.3
Keller, W.4
-
78
-
-
84863182811
-
The interaction of Pcf11 and Clp1 is needed for mRNA 3'-end formation and is modulated by amino acids in the ATP-binding site
-
Ghazy MA, Gordon JMB, Lee SD, Singh BN, Bohm A, Hampsey M, Moore C. 2012. The interaction of Pcf11 and Clp1 is needed for mRNA 3'-end formation and is modulated by amino acids in the ATP-binding site. Nucleic Acids Res. 40:1214-1225. http://dx.doi.org/10.1093/nar/gkr801.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 1214-1225
-
-
Ghazy, M.A.1
Gordon, J.M.B.2
Lee, S.D.3
Singh, B.N.4
Bohm, A.5
Hampsey, M.6
Moore, C.7
-
79
-
-
14844345009
-
Inactivation of the pre-mRNA cleavage and polyadenylation factor Pfs2 in fission yeast causes lethal cell cycle defects
-
Wang S-W, Asakawa K, Win TZ, Toda T, Norbury CJ. 2005. Inactivation of the pre-mRNA cleavage and polyadenylation factor Pfs2 in fission yeast causes lethal cell cycle defects. Mol. Cell. Biol. 25:2288-2296. http://dx.doi.org/10.1128/MCB.25.6.2288-2296.2005.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 2288-2296
-
-
Wang, S.-W.1
Asakawa, K.2
Win, T.Z.3
Toda, T.4
Norbury, C.J.5
-
80
-
-
0026353286
-
Molecular analyses of two poly(A) site-processing factors that determine the recognition and efficiency of cleavage of the pre-mRNA
-
Gilmartin GM, Nevins JR. 1991. Molecular analyses of two poly(A) site-processing factors that determine the recognition and efficiency of cleavage of the pre-mRNA. Mol. Cell. Biol. 11:2432-2438.
-
(1991)
Mol. Cell. Biol.
, vol.11
, pp. 2432-2438
-
-
Gilmartin, G.M.1
Nevins, J.R.2
-
81
-
-
0025177037
-
A multicomponent complex is required for the AAUAAA-dependent cross-linking of a 64-kilodalton protein to polyadenylation substrates
-
Wilusz J, Shenk T, Takagaki Y, Manley JL. 1990. A multicomponent complex is required for the AAUAAA-dependent cross-linking of a 64-kilodalton protein to polyadenylation substrates. Mol. Cell. Biol. 10: 1244-1248.
-
(1990)
Mol. Cell. Biol.
, vol.10
, pp. 1244-1248
-
-
Wilusz, J.1
Shenk, T.2
Takagaki, Y.3
Manley, J.L.4
-
82
-
-
0025695149
-
A multisubunit factor, CstF, is required for polyadenylation of mammalian pre-mRNAs
-
Takagaki Y, Manley JL, MacDonald CC, Wilusz J, Shenk T. 1990. A multisubunit factor, CstF, is required for polyadenylation of mammalian pre-mRNAs. Genes Dev. 4:2112-2120. http://dx.doi.org/10.1101/gad.4.12a.2112.
-
(1990)
Genes Dev.
, vol.4
, pp. 2112-2120
-
-
Takagaki, Y.1
Manley, J.L.2
MacDonald, C.C.3
Wilusz, J.4
Shenk, T.5
-
83
-
-
0031940245
-
The HAT helix, a repetitive motif implicated in RNA processing
-
Preker PJ, Keller W. 1998. The HAT helix, a repetitive motif implicated in RNA processing. Trends Biochem. Sci. 23:15-16. http://dx.doi.org/10.1016/S0968-0004(97)01156-0.
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 15-16
-
-
Preker, P.J.1
Keller, W.2
-
84
-
-
33947202065
-
Crystal structure of murine CstF-77: dimeric association and implications for polyadenylation of mRNA precursors
-
Bai Y, Auperin TC, Chou C-Y, Chang G-G, Manley JL, Tong L. 2007. Crystal structure of murine CstF-77: dimeric association and implications for polyadenylation of mRNA precursors. Mol. Cell 25:863-875. http://dx.doi.org/10.1016/j.molcel.2007.01.034.
-
(2007)
Mol. Cell
, vol.25
, pp. 863-875
-
-
Bai, Y.1
Auperin, T.C.2
Chou, C.-Y.3
Chang, G.-G.4
Manley, J.L.5
Tong, L.6
-
85
-
-
34547839747
-
The structure of the CstF-77 homodimer provides insights into CstF assembly
-
Legrand P, Pinaud N, Minvielle-Sébastia L, Fribourg S. 2007. The structure of the CstF-77 homodimer provides insights into CstF assembly. Nucleic Acids Res. 35:4515-4522. http://dx.doi.org/10.1093/nar/gkm458.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 4515-4522
-
-
Legrand, P.1
Pinaud, N.2
Minvielle-Sébastia, L.3
Fribourg, S.4
-
86
-
-
0036678128
-
Chimeric human CstF-77/Drosophila Suppressor of forked proteins rescue suppressor of forked mutant lethality and mRNA 3' end processing in Drosophila
-
Benoit B, Juge F, Iral F, Audibert A, Simonelig M. 2002. Chimeric human CstF-77/Drosophila Suppressor of forked proteins rescue suppressor of forked mutant lethality and mRNA 3' end processing in Drosophila. Proc. Natl. Acad. Sci. U. S. A. 99:10593-10598. http://dx.doi.org/10.1073/pnas.162191899.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 10593-10598
-
-
Benoit, B.1
Juge, F.2
Iral, F.3
Audibert, A.4
Simonelig, M.5
-
87
-
-
84861374448
-
Crystal structure of the Rna14-Rna15 complex
-
Paulson AR, Tong L. 2012. Crystal structure of the Rna14-Rna15 complex. RNA 18:1154-1162. http://dx.doi.org/10.1261/rna.032524.112.
-
(2012)
RNA
, vol.18
, pp. 1154-1162
-
-
Paulson, A.R.1
Tong, L.2
-
88
-
-
81855190895
-
Reconstitution of CF IA from overexpressed subunits reveals stoichiometry and provides insights into molecular topology
-
Gordon JMB, Shikov S, Kuehner JN, Liriano M, Lee E, Stafford W, Poulsen MB, Harrison C, Moore C, Bohm A. 2011. Reconstitution of CF IA from overexpressed subunits reveals stoichiometry and provides insights into molecular topology. Biochemistry 50:10203-10214. http://dx.doi.org/10.1021/bi200964p.
-
(2011)
Biochemistry
, vol.50
, pp. 10203-10214
-
-
Gordon, J.M.B.1
Shikov, S.2
Kuehner, J.N.3
Liriano, M.4
Lee, E.5
Stafford, W.6
Poulsen, M.B.7
Harrison, C.8
Moore, C.9
Bohm, A.10
-
89
-
-
0028028266
-
A polyadenylation factor subunit is the human homologue of the Drosophila suppressor of forked protein
-
Takagaki Y, Manley JL. 1994. A polyadenylation factor subunit is the human homologue of the Drosophila suppressor of forked protein. Nature 372:471-474. http://dx.doi.org/10.1038/372471a0.
-
(1994)
Nature
, vol.372
, pp. 471-474
-
-
Takagaki, Y.1
Manley, J.L.2
-
90
-
-
73649107901
-
The hinge domain of the cleavage stimulation factor protein CstF-64 is essential for CstF-77 interaction, nuclear localization, and polyadenylation
-
Hockert JA, Yeh H-J, MacDonald CC. 2010. The hinge domain of the cleavage stimulation factor protein CstF-64 is essential for CstF-77 interaction, nuclear localization, and polyadenylation. J. Biol. Chem. 285: 695-704. http://dx.doi.org/10.1074/jbc. M109.061705.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 695-704
-
-
Hockert, J.A.1
Yeh, H.-J.2
MacDonald, C.C.3
-
91
-
-
79953878285
-
Locked tether formation by cooperative folding of Rna14p monkeytail and Rna15p hinge domains in the yeast CF IA complex
-
Moreno-Morcillo M, Minvielle-Sébastia L, Fribourg S, Mackereth CD. 2011. Locked tether formation by cooperative folding of Rna14p monkeytail and Rna15p hinge domains in the yeast CF IA complex. Structure 19:534-545. http://dx.doi.org/10.1016/j.str.2011.02.003.
-
(2011)
Structure
, vol.19
, pp. 534-545
-
-
Moreno-Morcillo, M.1
Minvielle-Sébastia, L.2
Fribourg, S.3
Mackereth, C.D.4
-
92
-
-
3042555841
-
Rna14-Rna15 assembly mediates the RNA-binding capability of Saccharomyces cerevisiae cleavage factor IA
-
Noble CG, Walker PA, Calder LJ, Taylor IA. 2004. Rna14-Rna15 assembly mediates the RNA-binding capability of Saccharomyces cerevisiae cleavage factor IA. Nucleic Acids Res. 32:3364-3375. http://dx.doi.org/10.1093/nar/gkh664.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 3364-3375
-
-
Noble, C.G.1
Walker, P.A.2
Calder, L.J.3
Taylor, I.A.4
-
93
-
-
0023867362
-
A 64 kd nuclear protein binds to RNA segments that include the AAUAAA polyadenylation motif
-
Wilusz J, Shenk T. 1988. A 64 kd nuclear protein binds to RNA segments that include the AAUAAA polyadenylation motif. Cell 52:221-228. http://dx.doi.org/10.1016/0092-8674(88)90510-7.
-
(1988)
Cell
, vol.52
, pp. 221-228
-
-
Wilusz, J.1
Shenk, T.2
-
94
-
-
0026544430
-
The human 64-kDa polyadenylylation factor contains a ribonucleoprotein-type RNAbinding domain and unusual auxiliary motifs
-
Takagaki Y, MacDonald CC, Shenk T, Manley JL. 1992. The human 64-kDa polyadenylylation factor contains a ribonucleoprotein-type RNAbinding domain and unusual auxiliary motifs. Proc. Natl. Acad. Sci. U. S. A. 89:1403-1407. http://dx.doi.org/10.1073/pnas.89.4.1403.
-
(1992)
Proc. Natl. Acad. Sci. U. S. A.
, vol.89
, pp. 1403-1407
-
-
Takagaki, Y.1
MacDonald, C.C.2
Shenk, T.3
Manley, J.L.4
-
95
-
-
0030920331
-
RNA recognition by the human polyadenylation factor CstF
-
Takagaki Y, Manley JL. 1997. RNA recognition by the human polyadenylation factor CstF. Mol. Cell. Biol. 17:3907-3914.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 3907-3914
-
-
Takagaki, Y.1
Manley, J.L.2
-
96
-
-
0037507248
-
Recognition of GU-rich polyadenylation regulatory elements by human CstF-64 protein
-
Pérez Cañadillas JM, Varani G. 2003. Recognition of GU-rich polyadenylation regulatory elements by human CstF-64 protein. EMBO J. 22: 2821-2830. http://dx.doi.org/10.1093/emboj/cdg259.
-
(2003)
EMBO J.
, vol.22
, pp. 2821-2830
-
-
Pérez Cañadillas, J.M.1
Varani, G.2
-
97
-
-
77953261028
-
Structure of the Rna15 RRM-RNA complex reveals the molecular basis of GU specificity in transcriptional 3'-end processing factors
-
Pancevac C, Goldstone DC, Ramos A, Taylor IA. 2010. Structure of the Rna15 RRM-RNA complex reveals the molecular basis of GU specificity in transcriptional 3'-end processing factors. Nucleic Acids Res. 38:3119-3132. http://dx.doi.org/10.1093/nar/gkq002.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 3119-3132
-
-
Pancevac, C.1
Goldstone, D.C.2
Ramos, A.3
Taylor, I.A.4
-
98
-
-
0035162071
-
Rna15 interaction with the A-rich yeast polyadenylation signal is an essential step in mRNA 3'-end formation
-
Gross S, Moore CL. 2001. Rna15 interaction with the A-rich yeast polyadenylation signal is an essential step in mRNA 3'-end formation. Mol. Cell. Biol. 21:8045-8055. http://dx.doi.org/10.1128/MCB.21.23.8045-8055.2001.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 8045-8055
-
-
Gross, S.1
Moore, C.L.2
-
99
-
-
77955273066
-
Novel proteinprotein contacts facilitate mRNA 3'-processing signal recognition by Rna15 and Hrp1
-
Leeper TC, Qu X, Lu C, Moore C, Varani G. 2010. Novel proteinprotein contacts facilitate mRNA 3'-processing signal recognition by Rna15 and Hrp1. J. Mol. Biol. 401:334-349. http://dx.doi.org/10.1016/j.jmb.2010.06.032.
-
(2010)
J. Mol. Biol.
, vol.401
, pp. 334-349
-
-
Leeper, T.C.1
Qu, X.2
Lu, C.3
Moore, C.4
Varani, G.5
-
100
-
-
84871832908
-
Structural and biochemical analysis of the assembly and function of the yeast pre-mRNA 3' end processing complex CF I
-
Barnwal RP, Lee SD, Moore C, Varani G. 2012. Structural and biochemical analysis of the assembly and function of the yeast pre-mRNA 3' end processing complex CF I. Proc. Natl. Acad. Sci. U. S. A. 109:21342-21347. http://dx.doi.org/10.1073/pnas.1214102110.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 21342-21347
-
-
Barnwal, R.P.1
Lee, S.D.2
Moore, C.3
Varani, G.4
-
101
-
-
78651105864
-
Interactions of CstF-64, CstF-77, and symplekin: implications on localisation and function
-
Ruepp M-D, Schweingruber C, Kleinschmidt N, Schümperli D. 2011. Interactions of CstF-64, CstF-77, and symplekin: implications on localisation and function. Mol. Biol. Cell 22:91-104. http://dx.doi.org/10.1091/mbc. E10-06-0543.
-
(2011)
Mol. Biol. Cell
, vol.22
, pp. 91-104
-
-
Ruepp, M.-D.1
Schweingruber, C.2
Kleinschmidt, N.3
Schümperli, D.4
-
102
-
-
0035933149
-
Five subunits are required for reconstitution of the cleavage and polyadenylation activities of Saccharomyces cerevisiae cleavage factor I
-
Gross S, Moore C. 2001. Five subunits are required for reconstitution of the cleavage and polyadenylation activities of Saccharomyces cerevisiae cleavage factor I. Proc. Natl. Acad. Sci. U. S. A. 98:6080-6085. http://dx.doi.org/10.1073/pnas.101046598.
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 6080-6085
-
-
Gross, S.1
Moore, C.2
-
103
-
-
33847327963
-
The C-terminal domains of vertebrate CstF-64 and its yeast orthologue Rna15 form a new structure critical for mRNA 3'-end processing
-
Qu X, Perez-Canadillas J-M, Agrawal S, De Baecke J, Cheng H, Varani G, Moore C. 2007. The C-terminal domains of vertebrate CstF-64 and its yeast orthologue Rna15 form a new structure critical for mRNA 3'-end processing. J. Biol. Chem. 282:2101-2115. http://dx.doi.org/10.1074/jbc. M609981200.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 2101-2115
-
-
Qu, X.1
Perez-Canadillas, J.-M.2
Agrawal, S.3
De Baecke, J.4
Cheng, H.5
Varani, G.6
Moore, C.7
-
104
-
-
0035947082
-
Evolutionarily conserved interaction between CstF-64 and PC4 links transcription, polyadenylation, and termination
-
Calvo O, Manley JL. 2001. Evolutionarily conserved interaction between CstF-64 and PC4 links transcription, polyadenylation, and termination. Mol. Cell 7:1013-1023. http://dx.doi.org/10.1016/S1097-2765(01)00236-2.
-
(2001)
Mol. Cell
, vol.7
, pp. 1013-1023
-
-
Calvo, O.1
Manley, J.L.2
-
105
-
-
0033613218
-
MEAR Asequence repeat of human CstF-64 polyadenylation factor is helical in solution. A spectroscopic and calorimetric study
-
Richardson JM, McMahon KW, MacDonald CC, Makhatadze GI. 1999.MEARAsequence repeat of human CstF-64 polyadenylation factor is helical in solution. A spectroscopic and calorimetric study. Biochemistry 38:12869-12875.
-
(1999)
Biochemistry
, vol.38
, pp. 12869-12875
-
-
Richardson, J.M.1
McMahon, K.W.2
MacDonald, C.C.3
Makhatadze, G.I.4
-
106
-
-
0033536040
-
Two distinct forms of the 64,000 Mr protein of the cleavage stimulation factor are expressed in mouse male germ cells
-
Wallace AM, Dass B, Ravnik SE, Tonk V, Jenkins NA, Gilbert DJ, Copeland NG, MacDonald CC. 1999. Two distinct forms of the 64,000 Mr protein of the cleavage stimulation factor are expressed in mouse male germ cells. Proc. Natl. Acad. Sci. U. S. A. 96:6763-6768. http://dx.doi.org/10.1073/pnas.96.12.6763.
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 6763-6768
-
-
Wallace, A.M.1
Dass, B.2
Ravnik, S.E.3
Tonk, V.4
Jenkins, N.A.5
Gilbert, D.J.6
Copeland, N.G.7
MacDonald, C.C.8
-
107
-
-
84868159213
-
The τCstF-64 polyadenylation protein controls genome expression in testis
-
Li W, Yeh H-J, Shankarling GS, Ji Z, Tian B, MacDonald CC. 2012. The τCstF-64 polyadenylation protein controls genome expression in testis. PLoS One 7:e48373. http://dx.doi.org/10.1371/journal.pone.0048373.
-
(2012)
PLoS One
, vol.7
-
-
Li, W.1
Yeh, H.-J.2
Shankarling, G.S.3
Ji, Z.4
Tian, B.5
MacDonald, C.C.6
-
108
-
-
84888400492
-
Overlapping and distinct functions of CstF64 and CstF64τ in mammalian mRNA 3' processing
-
Yao C, Choi E-A, Weng L, Xie X, Wan J, Xing Y, Moresco JJ, Tu PG, Yates JR, III, Shi Y. 2013. Overlapping and distinct functions of CstF64 and CstF64τ in mammalian mRNA 3' processing. RNA 19:1781-1790. http://dx.doi.org/10.1261/rna.042317.113.
-
(2013)
RNA
, vol.19
, pp. 1781-1790
-
-
Yao, C.1
Choi, E.-A.2
Weng, L.3
Xie, X.4
Wan, J.5
Xing, Y.6
Moresco, J.J.7
Tu, P.G.8
Yates III, J.R.9
Shi, Y.10
-
109
-
-
0027083119
-
A human polyadenylation factor is a G protein beta-subunit homologue
-
Takagaki Y, Manley JL. 1992. A human polyadenylation factor is a G protein beta-subunit homologue. J. Biol. Chem. 267:23471-23474.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 23471-23474
-
-
Takagaki, Y.1
Manley, J.L.2
-
110
-
-
79951536375
-
Hexameric architecture of CstF supported by CstF-50 homodimerization domain structure
-
Moreno-Morcillo M, Minvielle-Sébastia L, Mackereth C, Fribourg S. 2011. Hexameric architecture of CstF supported by CstF-50 homodimerization domain structure. RNA 17:412-418. http://dx.doi.org/10.1261/rna.2481011.
-
(2011)
RNA
, vol.17
, pp. 412-418
-
-
Moreno-Morcillo, M.1
Minvielle-Sébastia, L.2
Mackereth, C.3
Fribourg, S.4
-
111
-
-
0001221269
-
Functional interaction of BRCA1-associated BARD1 with polyadenylation factor CstF-50
-
Kleiman FE, Manley JL. 1999. Functional interaction of BRCA1-associated BARD1 with polyadenylation factor CstF-50. Science 285: 1576-1579. http://dx.doi.org/10.1126/science.285.5433.1576.
-
(1999)
Science
, vol.285
, pp. 1576-1579
-
-
Kleiman, F.E.1
Manley, J.L.2
-
112
-
-
0035831030
-
The BARD1-CstF-50 interaction links mRNA 3' end formation to DNA damage and tumor suppression
-
Kleiman FE, Manley JL. 2001. The BARD1-CstF-50 interaction links mRNA 3' end formation to DNA damage and tumor suppression. Cell 104:743-753. http://dx.doi.org/10.1016/S0092-8674(01)00270-7.
-
(2001)
Cell
, vol.104
, pp. 743-753
-
-
Kleiman, F.E.1
Manley, J.L.2
-
113
-
-
0029991323
-
Purification and characterization of human cleavage factor Im involved in the 3' end processing of messenger RNA precursors
-
Rüegsegger U, Beyer K, Keller W. 1996. Purification and characterization of human cleavage factor Im involved in the 3' end processing of messenger RNA precursors. J. Biol. Chem. 271:6107-6113. http://dx.doi.org/10.1074/jbc.271.11.6107.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 6107-6113
-
-
Rüegsegger, U.1
Beyer, K.2
Keller, W.3
-
114
-
-
0031610366
-
Human pre-mRNA cleavage factor Im is related to spliceosomal SR proteins and can be reconstituted in vitro from recombinant subunits
-
Rüegsegger U, Blank D, Keller W. 1998. Human pre-mRNA cleavage factor Im is related to spliceosomal SR proteins and can be reconstituted in vitro from recombinant subunits. Mol. Cell 1:243-253. http://dx.doi.org/10.1016/S1097-2765(00)80025-8.
-
(1998)
Mol. Cell
, vol.1
, pp. 243-253
-
-
Rüegsegger, U.1
Blank, D.2
Keller, W.3
-
115
-
-
79952484876
-
mRNA 3' end processing and more-multiple functions of mammalian cleavage factor I-68
-
Ruepp M-D, Schümperli D, Barabino SML. 2011. mRNA 3' end processing and more-multiple functions of mammalian cleavage factor I-68. Wiley Interdiscip. Rev. RNA 2:79-91. http://dx.doi.org/10.1002/wrna.35.
-
(2011)
Wiley Interdiscip. Rev. RNA
, vol.2
, pp. 79-91
-
-
Ruepp, M.-D.1
Schümperli, D.2
Barabino, S.M.L.3
-
116
-
-
0347416974
-
A mechanism for the regulation of pre-mRNA 3' processing by human cleavage factor Im
-
Brown KM, Gilmartin GM. 2003. A mechanism for the regulation of pre-mRNA 3' processing by human cleavage factor Im. Mol. Cell 12: 1467-1476. http://dx.doi.org/10.1016/S1097-2765(03)00453-2.
-
(2003)
Mol. Cell
, vol.12
, pp. 1467-1476
-
-
Brown, K.M.1
Gilmartin, G.M.2
-
117
-
-
4143151952
-
Distinct sequence motifs within the 68-kDa subunit of cleavage factor Im mediate RNA binding, protein-protein interactions, and subcellular localization
-
Dettwiler S, Aringhieri C, Cardinale S, Keller W, Barabino SML. 2004. Distinct sequence motifs within the 68-kDa subunit of cleavage factor Im mediate RNA binding, protein-protein interactions, and subcellular localization. J. Biol. Chem. 279:35788-35797. http://dx.doi.org/10.1074/jbc. M403927200.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 35788-35797
-
-
Dettwiler, S.1
Aringhieri, C.2
Cardinale, S.3
Keller, W.4
Barabino, S.M.L.5
-
118
-
-
30744470374
-
The Nudix hydrolase superfamily
-
McLennan AG. 2006. The Nudix hydrolase superfamily. Cell. Mol. Life Sci. 63:123-143. http://dx.doi.org/10.1007/s00018-005-5386-7.
-
(2006)
Cell. Mol. Life Sci.
, vol.63
, pp. 123-143
-
-
McLennan, A.G.1
-
119
-
-
45549083224
-
Crystal structure of the 25 kDa subunit of human cleavage factor Im
-
Coseno M, Martin G, Berger C, Gilmartin G, Keller W, Doublié S. 2008. Crystal structure of the 25 kDa subunit of human cleavage factor Im. Nucleic Acids Res. 36:3474-3483. http://dx.doi.org/10.1093/nar/gkn079.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 3474-3483
-
-
Coseno, M.1
Martin, G.2
Berger, C.3
Gilmartin, G.4
Keller, W.5
Doublié, S.6
-
120
-
-
58149311440
-
The crystal structure of human cleavage and polyadenylation specific factor-5 reveals a dimeric Nudix protein with a conserved catalytic site
-
Trésaugues L, Stenmark P, Schüler H, Flodin S, Welin M, Nyman T, Hammarström M, Moche M, Gräslund S, Nordlund P. 2008. The crystal structure of human cleavage and polyadenylation specific factor-5 reveals a dimeric Nudix protein with a conserved catalytic site. Proteins 73:1047-1052. http://dx.doi.org/10.1002/prot.22198.
-
(2008)
Proteins
, vol.73
, pp. 1047-1052
-
-
Trésaugues, L.1
Stenmark, P.2
Schüler, H.3
Flodin, S.4
Welin, M.5
Nyman, T.6
Hammarström, M.7
Moche, M.8
Gräslund, S.9
Nordlund, P.10
-
121
-
-
77953454014
-
Structural basis of UGUA recognition by the Nudix protein CFI (m)25 and implications for a regulatory role in mRNA 3' processing
-
Yang Q, Gilmartin GM, Doublié S. 2010. Structural basis of UGUA recognition by the Nudix protein CFI (m)25 and implications for a regulatory role in mRNA 3' processing. Proc. Natl. Acad. Sci. U. S. A. 107: 10062-10067. http://dx.doi.org/10.1073/pnas.1000848107.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 10062-10067
-
-
Yang, Q.1
Gilmartin, G.M.2
Doublié, S.3
-
122
-
-
0142209394
-
Association of polyadenylation cleavage factor I with U1 snRNP
-
Awasthi S, Alwine JC. 2003. Association of polyadenylation cleavage factor I with U1 snRNP. RNA 9:1400-1409. http://dx.doi.org/10.1261/rna.5104603.
-
(2003)
RNA
, vol.9
, pp. 1400-1409
-
-
Awasthi, S.1
Alwine, J.C.2
-
123
-
-
0036674269
-
Large-scale proteomic analysis of the human spliceosome
-
Rappsilber J, Ryder U, Lamond AI, Mann M. 2002. Large-scale proteomic analysis of the human spliceosome. Genome Res. 12:1231-1245. http://dx.doi.org/10.1101/gr.473902.
-
(2002)
Genome Res.
, vol.12
, pp. 1231-1245
-
-
Rappsilber, J.1
Ryder, U.2
Lamond, A.I.3
Mann, M.4
-
124
-
-
33750200773
-
An interaction between U2AF 65 and CF I(m) links the splicing and 3' end processing machineries
-
Millevoi S, Loulergue C, Dettwiler S, Karaa SZ, Keller W, Antoniou M, Vagner S. 2006. An interaction between U2AF 65 and CF I(m) links the splicing and 3' end processing machineries. EMBO J. 25:4854-4864. http://dx.doi.org/10.1038/sj.emboj.7601331.
-
(2006)
EMBO J.
, vol.25
, pp. 4854-4864
-
-
Millevoi, S.1
Loulergue, C.2
Dettwiler, S.3
Karaa, S.Z.4
Keller, W.5
Antoniou, M.6
Vagner, S.7
-
125
-
-
79960138153
-
Structural basis of pre-mRNA recognition by the human cleavage factor Im complex
-
Li H, Tong S, Li X, Shi H, Ying Z, Gao Y, Ge H, Niu L, Teng M. 2011. Structural basis of pre-mRNA recognition by the human cleavage factor Im complex. Cell Res. 21:1039-1051. http://dx.doi.org/10.1038/cr.2011.67.
-
(2011)
Cell Res.
, vol.21
, pp. 1039-1051
-
-
Li, H.1
Tong, S.2
Li, X.3
Shi, H.4
Ying, Z.5
Gao, Y.6
Ge, H.7
Niu, L.8
Teng, M.9
-
126
-
-
79952459288
-
Crystal structure of a human cleavage factor CFI(m)25/CFI(m)68/RNA complex provides an insight into poly(A) site recognition and RNA looping
-
Yang Q, Coseno M, Gilmartin GM, Doublié S. 2011. Crystal structure of a human cleavage factor CFI(m)25/CFI(m)68/RNA complex provides an insight into poly(A) site recognition and RNA looping. Structure 19: 368-377. http://dx.doi.org/10.1016/j.str.2010.12.021.
-
(2011)
Structure
, vol.19
, pp. 368-377
-
-
Yang, Q.1
Coseno, M.2
Gilmartin, G.M.3
Doublié, S.4
-
127
-
-
84859266588
-
The structure of human cleavage factor I(m) hints at functions beyond UGUA-specific RNA binding: a role in alternative polyadenylation and a potential link to 5= capping and splicing
-
Yang Q, Gilmartin GM, Doublié S. 2011. The structure of human cleavage factor I(m) hints at functions beyond UGUA-specific RNA binding: a role in alternative polyadenylation and a potential link to 5= capping and splicing. RNA Biol. 8:748-753. http://dx.doi.org/10.4161/rna.8.5.16040.
-
(2011)
RNA Biol.
, vol.8
, pp. 748-753
-
-
Yang, Q.1
Gilmartin, G.M.2
Doublié, S.3
-
128
-
-
33845675377
-
Knockdown of 25 kDa subunit of cleavage factor Im in HeLa cells alters alternative polyadenylation within 3'-UTRs
-
Kubo T, Wada T, Yamaguchi Y, Shimizu A, Handa H. 2006. Knockdown of 25 kDa subunit of cleavage factor Im in HeLa cells alters alternative polyadenylation within 3'-UTRs. Nucleic Acids Res. 34:6264-6271. http://dx.doi.org/10.1093/nar/gkl794.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 6264-6271
-
-
Kubo, T.1
Wada, T.2
Yamaguchi, Y.3
Shimizu, A.4
Handa, H.5
-
129
-
-
84863093884
-
Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length
-
Martin G, Gruber AR, Keller W, Zavolan M. 2012. Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length. Cell Rep. 1:753-763. http://dx.doi.org/10.1016/j.celrep.2012.05.003.
-
(2012)
Cell Rep.
, vol.1
, pp. 753-763
-
-
Martin, G.1
Gruber, A.R.2
Keller, W.3
Zavolan, M.4
-
130
-
-
0034331199
-
Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors
-
de Vries H, Rüegsegger U, Hübner W, Friedlein A, Langen H, Keller W. 2000. Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors. EMBO J. 19:5895-5904. http://dx.doi.org/10.1093/emboj/19.21.5895.
-
(2000)
EMBO J.
, vol.19
, pp. 5895-5904
-
-
de Vries, H.1
Rüegsegger, U.2
Hübner, W.3
Friedlein, A.4
Langen, H.5
Keller, W.6
-
131
-
-
0031024993
-
PCF11 encodes a third protein component of yeast cleavage and polyadenylation factor I
-
Amrani N, Minet M, Wyers F, Dufour ME, Aggerbeck LP, Lacroute F. 1997. PCF11 encodes a third protein component of yeast cleavage and polyadenylation factor I. Mol. Cell. Biol. 17:1102-1109.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 1102-1109
-
-
Amrani, N.1
Minet, M.2
Wyers, F.3
Dufour, M.E.4
Aggerbeck, L.P.5
Lacroute, F.6
-
132
-
-
0030800231
-
The major yeast poly(A)-binding protein is associated with cleavage factor IA and functions in premessenger RNA 3'-end formation
-
Minvielle-Sebastia L, Preker PJ, Wiederkehr T, Strahm Y, Keller W. 1997. The major yeast poly(A)-binding protein is associated with cleavage factor IA and functions in premessenger RNA 3'-end formation. Proc. Natl. Acad. Sci. U. S. A. 94:7897-7902. http://dx.doi.org/10.1073/pnas.94.15.7897.
-
(1997)
Proc. Natl. Acad. Sci. U. S. A.
, vol.94
, pp. 7897-7902
-
-
Minvielle-Sebastia, L.1
Preker, P.J.2
Wiederkehr, T.3
Strahm, Y.4
Keller, W.5
-
133
-
-
0038219583
-
Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination
-
Sadowski M, Dichtl B, Hübner W, Keller W. 2003. Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination. EMBO J. 22:2167-2177. http://dx.doi.org/10.1093/emboj/cdg200.
-
(2003)
EMBO J.
, vol.22
, pp. 2167-2177
-
-
Sadowski, M.1
Dichtl, B.2
Hübner, W.3
Keller, W.4
-
134
-
-
3142615882
-
Recognition of RNA polymerase II carboxy- terminal domain by 3'-RNA-processing factors
-
Meinhart A, Cramer P. 2004. Recognition of RNA polymerase II carboxy- terminal domain by 3'-RNA-processing factors. Nature 430:223-226. http://dx.doi.org/10.1038/nature02679.
-
(2004)
Nature
, vol.430
, pp. 223-226
-
-
Meinhart, A.1
Cramer, P.2
-
135
-
-
15544376116
-
Key features of the interaction between Pcf11 CID and RNA polymerase II CTD
-
Noble CG, Hollingworth D, Martin SR, Ennis-Adeniran V, Smerdon SJ, Kelly G, Taylor IA, Ramos A. 2005. Key features of the interaction between Pcf11 CID and RNA polymerase II CTD. Nat. Struct. Mol. Biol. 12:144-151. http://dx.doi.org/10.1038/nsmb887.
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 144-151
-
-
Noble, C.G.1
Hollingworth, D.2
Martin, S.R.3
Ennis-Adeniran, V.4
Smerdon, S.J.5
Kelly, G.6
Taylor, I.A.7
Ramos, A.8
-
136
-
-
0035895294
-
Cleavage/polyadenylation factor IA associates with the carboxyl-terminal domain of RNA polymerase II in Saccharomyces cerevisiae
-
Barillà D, Lee BA, Proudfoot NJ. 2001. Cleavage/polyadenylation factor IA associates with the carboxyl-terminal domain of RNA polymerase II in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U. S. A. 98:445-450. http://dx.doi.org/10.1073/pnas.021545298.
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 445-450
-
-
Barillà, D.1
Lee, B.A.2
Proudfoot, N.J.3
-
137
-
-
0036285707
-
Functional interaction of yeast pre-mRNA 3' end processing factors with RNA polymerase II
-
Licatalosi DD, Geiger G, Minet M, Schroeder S, Cilli K, McNeil JB, Bentley DL. 2002. Functional interaction of yeast pre-mRNA 3' end processing factors with RNA polymerase II. Mol. Cell 9:1101-1111. http://dx.doi.org/10.1016/S1097-2765(02)00518-X.
-
(2002)
Mol. Cell
, vol.9
, pp. 1101-1111
-
-
Licatalosi, D.D.1
Geiger, G.2
Minet, M.3
Schroeder, S.4
Cilli, K.5
McNeil, J.B.6
Bentley, D.L.7
-
138
-
-
33645471177
-
RNA polymerase II CTD phosphopeptides compete with RNA for the interaction with Pcf11
-
Hollingworth D, Noble CG, Taylor IA, Ramos A. 2006. RNA polymerase II CTD phosphopeptides compete with RNA for the interaction with Pcf11. RNA 12:555-560. http://dx.doi.org/10.1261/rna.2304506.
-
(2006)
RNA
, vol.12
, pp. 555-560
-
-
Hollingworth, D.1
Noble, C.G.2
Taylor, I.A.3
Ramos, A.4
-
139
-
-
22344443368
-
CTD-dependent dismantling of the RNA polymerase II elongation complex by the pre-mRNA 3'-end processing factor, Pcf11
-
Zhang Z, Fu J, Gilmour DS. 2005. CTD-dependent dismantling of the RNA polymerase II elongation complex by the pre-mRNA 3'-end processing factor, Pcf11. Genes Dev. 19:1572-1580. http://dx.doi.org/10.1101/gad.1296305.
-
(2005)
Genes Dev.
, vol.19
, pp. 1572-1580
-
-
Zhang, Z.1
Fu, J.2
Gilmour, D.S.3
-
140
-
-
39549110407
-
Human Pcf11 enhances degradation of RNA polymerase II-associated nascent RNA and transcriptional termination
-
West S, Proudfoot NJ. 2008. Human Pcf11 enhances degradation of RNA polymerase II-associated nascent RNA and transcriptional termination. Nucleic Acids Res. 36:905-914. http://dx.doi.org/10.1093/nar/gkm1112.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 905-914
-
-
West, S.1
Proudfoot, N.J.2
-
141
-
-
33846688769
-
Structure of a nucleotide-bound Clp1-Pcf11 polyadenylation factor
-
Noble CG, Beuth B, Taylor IA. 2007. Structure of a nucleotide-bound Clp1-Pcf11 polyadenylation factor. Nucleic Acids Res. 35:87-99. http://dx.doi.org/10.1093/nar/gkl1010.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 87-99
-
-
Noble, C.G.1
Beuth, B.2
Taylor, I.A.3
-
142
-
-
0001607723
-
Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold
-
Walker JE, Saraste M, Runswick MJ, Gay NJ. 1982. Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J. 1:945-951.
-
(1982)
EMBO J.
, vol.1
, pp. 945-951
-
-
Walker, J.E.1
Saraste, M.2
Runswick, M.J.3
Gay, N.J.4
-
143
-
-
84856845697
-
An essential role for Clp1 in assembly of polyadenylation complex CF IA and Pol II transcription termination
-
Haddad R, Maurice F, Viphakone N, Voisinet-Hakil F, Fribourg S, Minvielle-Sébastia L. 2012. An essential role for Clp1 in assembly of polyadenylation complex CF IA and Pol II transcription termination. Nucleic Acids Res. 40:1226-1239. http://dx.doi.org/10.1093/nar/gkr800.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 1226-1239
-
-
Haddad, R.1
Maurice, F.2
Viphakone, N.3
Voisinet-Hakil, F.4
Fribourg, S.5
Minvielle-Sébastia, L.6
-
144
-
-
84055216962
-
The P-loop domain of yeast Clp1 mediates interactions between CF IA and CPF factors in pre-mRNA 3' end formation
-
Holbein S, Scola S, Loll B, Dichtl BS, Hübner W, Meinhart A, Dichtl B. 2011. The P-loop domain of yeast Clp1 mediates interactions between CF IA and CPF factors in pre-mRNA 3' end formation. PLoS One 6:e29139. http://dx.doi.org/10.1371/journal.pone.0029139.
-
(2011)
PLoS One
, vol.6
-
-
Holbein, S.1
Scola, S.2
Loll, B.3
Dichtl, B.S.4
Hübner, W.5
Meinhart, A.6
Dichtl, B.7
-
145
-
-
34248563036
-
The human RNA kinase hClp1 is active on 3' transfer RNA exons and short interfering RNAs
-
Weitzer S, Martinez J. 2007. The human RNA kinase hClp1 is active on 3' transfer RNA exons and short interfering RNAs. Nature 447:222-226. http://dx.doi.org/10.1038/nature05777.
-
(2007)
Nature
, vol.447
, pp. 222-226
-
-
Weitzer, S.1
Martinez, J.2
-
146
-
-
50649088948
-
Human RNA 5=-kinase (hClp1) can function as a tRNA splicing enzyme in vivo
-
Ramirez A, Shuman S, Schwer B. 2008. Human RNA 5=-kinase (hClp1) can function as a tRNA splicing enzyme in vivo. RNA 14:1737-1745. http://dx.doi.org/10.1261/rna.1142908.
-
(2008)
RNA
, vol.14
, pp. 1737-1745
-
-
Ramirez, A.1
Shuman, S.2
Schwer, B.3
-
147
-
-
0029840160
-
Symplekin, a novel type of tight junction plaque protein
-
Keon BH, Schäfer S, Kuhn C, Grund C, Franke WW. 1996. Symplekin, a novel type of tight junction plaque protein. J. Cell Biol. 134:1003-1018. http://dx.doi.org/10.1083/jcb.134.4.1003.
-
(1996)
J. Cell Biol.
, vol.134
, pp. 1003-1018
-
-
Keon, B.H.1
Schäfer, S.2
Kuhn, C.3
Grund, C.4
Franke, W.W.5
-
148
-
-
64649086745
-
The essential Nterminus of the Pta1 scaffold protein is required for snoRNA transcription termination and Ssu72 function but is dispensable for pre-mRNA 3'-end processing
-
Ghazy MA, He X, Singh BN, Hampsey M, Moore C. 2009. The essential Nterminus of the Pta1 scaffold protein is required for snoRNA transcription termination and Ssu72 function but is dispensable for pre-mRNA 3'-end processing. Mol. Cell. Biol. 29:2296-2307. http://dx.doi.org/10.1128/MCB.01514-08.
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 2296-2307
-
-
Ghazy, M.A.1
He, X.2
Singh, B.N.3
Hampsey, M.4
Moore, C.5
-
149
-
-
0032721092
-
Pta1, a component of yeast CF II, is required for both cleavage and poly(A) addition of mRNA precursor
-
Zhao J, Kessler M, Helmling S, O'Connor JP, Moore C. 1999. Pta1, a component of yeast CF II, is required for both cleavage and poly(A) addition of mRNA precursor. Mol. Cell. Biol. 19:7733-7740.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 7733-7740
-
-
Zhao, J.1
Kessler, M.2
Helmling, S.3
O'Connor, J.P.4
Moore, C.5
-
150
-
-
33344455707
-
The role of the Brr5/Ysh1 C-terminal domain and its homolog Syc1 inmR.N.A3'-end processing in Saccharomyces cerevisiae. R.N.A12
-
Zhelkovsky A, Tacahashi Y, Nasser T, He X, Sterzer U, Jensen TH, Domdey H, Moore C. 2006. The role of the Brr5/Ysh1 C-terminal domain and its homolog Syc1 inmRNA3'-end processing in Saccharomyces cerevisiae. RNA12: 435-445. http://dx.doi.org/10.1261/rna.2267606.
-
(2006)
, pp. 435-445
-
-
Zhelkovsky, A.1
Tacahashi, Y.2
Nasser, T.3
He, X.4
Sterzer, U.5
Jensen, T.H.6
Domdey, H.7
Moore, C.8
-
151
-
-
0345373987
-
Functional interactions between the transcription and mRNA 3' end processing machineries mediated by Ssu72 and Sub1
-
He X, Khan AU, Cheng H, Pappas DL, Jr, Hampsey M, Moore CL. 2003. Functional interactions between the transcription and mRNA 3' end processing machineries mediated by Ssu72 and Sub1. Genes Dev. 17:1030-1042. http://dx.doi.org/10.1101/gad.1075203.
-
(2003)
Genes Dev.
, vol.17
, pp. 1030-1042
-
-
He, X.1
Khan, A.U.2
Cheng, H.3
Pappas Jr., D.L.4
Hampsey, M.5
Moore, C.L.6
-
152
-
-
68949196300
-
Crystal structure of the HEAT domain from the premRNA processing factor symplekin
-
Kennedy SA, Frazier ML, Steiniger M, Mast AM, MarzluffWF, Redinbo MR. 2009. Crystal structure of the HEAT domain from the premRNA processing factor symplekin. J. Mol. Biol. 392:115-128. http://dx.doi.org/10.1016/j.jmb.2009.06.062.
-
(2009)
J. Mol. Biol.
, vol.392
, pp. 115-128
-
-
Kennedy, S.A.1
Frazier, M.L.2
Steiniger, M.3
Mast, A.M.4
Marzluff, W.F.5
Redinbo, M.R.6
-
153
-
-
77958018260
-
Crystal structure of the human symplekin-Ssu72-CTD phosphopeptide complex
-
Xiang K, Nagaike T, Xiang S, Kilic T, Beh MM, Manley JL, Tong L. 2010. Crystal structure of the human symplekin-Ssu72-CTD phosphopeptide complex. Nature 467:729-733. http://dx.doi.org/10.1038/nature09391.
-
(2010)
Nature
, vol.467
, pp. 729-733
-
-
Xiang, K.1
Nagaike, T.2
Xiang, S.3
Kilic, T.4
Beh, M.M.5
Manley, J.L.6
Tong, L.7
-
154
-
-
0035946941
-
Comparison of ARM and HEAT protein repeats
-
Andrade MA, Petosa C, O'Donoghue SI, Müller CW, Bork P. 2001. Comparison of ARM and HEAT protein repeats. J. Mol. Biol. 309:1-18. http://dx.doi.org/10.1006/jmbi.2001.4624.
-
(2001)
J. Mol. Biol.
, vol.309
, pp. 1-18
-
-
Andrade, M.A.1
Petosa, C.2
O'Donoghue, S.I.3
Müller, C.W.4
Bork, P.5
-
155
-
-
54149091257
-
Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail
-
MarzluffWF, Wagner EJ, Duronio RJ. 2008. Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail. Nat. Rev. Genet. 9:843-854. http://dx.doi.org/10.1038/nrg2438.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 843-854
-
-
Marzluff, W.F.1
Wagner, E.J.2
Duronio, R.J.3
-
156
-
-
0036000009
-
Symplekin, a constitutive protein of karyo- and cytoplasmic particles involved in mRNA biogenesis in Xenopus laevis oocytes
-
Hofmann I, Schnölzer M, Kaufmann I, Franke WW. 2002. Symplekin, a constitutive protein of karyo- and cytoplasmic particles involved in mRNA biogenesis in Xenopus laevis oocytes. Mol. Biol. Cell 13:1665-1676. http://dx.doi.org/10.1091/mbc.01-12-0567.
-
(2002)
Mol. Biol. Cell
, vol.13
, pp. 1665-1676
-
-
Hofmann, I.1
Schnölzer, M.2
Kaufmann, I.3
Franke, W.W.4
-
157
-
-
65549149976
-
A core complex of CPSF73, CPSF100, and symplekin may form two different cleavage factors for processing of poly(A) and histone mRNAs
-
Sullivan KD, Steiniger M, MarzluffWF. 2009. A core complex of CPSF73, CPSF100, and symplekin may form two different cleavage factors for processing of poly(A) and histone mRNAs. Mol. Cell 34:322-332. http://dx.doi.org/10.1016/j.molcel.2009.04.024.
-
(2009)
Mol. Cell
, vol.34
, pp. 322-332
-
-
Sullivan, K.D.1
Steiniger, M.2
Marzluff, W.F.3
-
158
-
-
0035827346
-
Structural basis of transcription: RNA polymerase II at 2.8 Angstrom resolution
-
Cramer P, Bushnell DA, Kornberg RD. 2001. Structural basis of transcription: RNA polymerase II at 2.8 Angstrom resolution. Science 292: 1863-1876. http://dx.doi.org/10.1126/science.1059493.
-
(2001)
Science
, vol.292
, pp. 1863-1876
-
-
Cramer, P.1
Bushnell, D.A.2
Kornberg, R.D.3
-
159
-
-
84869014886
-
Updating the CTD story: from tail to epic
-
Bartkowiak B., Mackellar, A. L., Greenleaf A.L. 2011. Updating the CTD story: from tail to epic. Genet. Res. Int. 2011:623718. http://dx.doi.org/10.4061/2011/623718.
-
(2011)
Genet. Res. Int.
, vol.2011
, pp. 623718
-
-
Bartkowiak, B.1
Mackellar, A.L.2
Greenleaf, A.L.3
-
160
-
-
84867160564
-
The RNA polymerase II CTD coordinates transcription and RNA processing
-
Hsin J-P, Manley JL. 2012. The RNA polymerase II CTD coordinates transcription and RNA processing. Genes Dev. 26:2119-2137. http://dx.doi.org/10.1101/gad.200303.112.
-
(2012)
Genes Dev.
, vol.26
, pp. 2119-2137
-
-
Hsin, J.-P.1
Manley, J.L.2
-
161
-
-
84862493306
-
Updating the RNA polymerase CTD code: adding gene-specific layers
-
EgloffS, Dienstbier M, Murphy S. 2012. Updating the RNA polymerase CTD code: adding gene-specific layers. Trends Genet. Trends Genet. 28:333-341. http://dx.doi.org/10.1016/j.tig.2012.03.007.
-
(2012)
Trends Genet. Trends Genet.
, vol.28
, pp. 333-341
-
-
Egloff, S.1
Dienstbier, M.2
Murphy, S.3
-
162
-
-
84871441895
-
Emerging views on the CTD code
-
Zhang D.W., Rodríguez-Molina J.B., Tietjen J.R., Nemec C.M., Ansari A.Z. 2012. Emerging views on the CTD code. Genet. Res. Int. 2012:347214. http://dx.doi.org/10.1155/2012/347214.
-
(2012)
Genet. Res. Int.
, vol.2012
, pp. 347214
-
-
Zhang, D.W.1
Rodríguez-Molina, J.B.2
Tietjen, J.R.3
Nemec, C.M.4
Ansari, A.Z.5
-
163
-
-
84872405841
-
Dynamic phosphorylation patterns of RNA polymerase II CTD during transcription
-
Heidemann M, Hintermair C, Voß K, Eick D. 2013. Dynamic phosphorylation patterns of RNA polymerase II CTD during transcription. Biochim. Biophys. Acta 1829:55-62. http://dx.doi.org/10.1016/j.bbagrm.2012.08.013.
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 55-62
-
-
Heidemann, M.1
Hintermair, C.2
Voß, K.3
Eick, D.4
-
164
-
-
0033986862
-
Kin28, the TFIIH-associated carboxy-terminal domain kinase, facilitates the recruitment of mRNA processing machinery to RNA polymerase II
-
Rodriguez CR, Cho EJ, Keogh MC, Moore CL, Greenleaf AL, Buratowski S. 2000. Kin28, the TFIIH-associated carboxy-terminal domain kinase, facilitates the recruitment of mRNA processing machinery to RNA polymerase II. Mol. Cell. Biol. 20:104-112. http://dx.doi.org/10.1128/MCB.20.1.104-112.2000.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 104-112
-
-
Rodriguez, C.R.1
Cho, E.J.2
Keogh, M.C.3
Moore, C.L.4
Greenleaf, A.L.5
Buratowski, S.6
-
165
-
-
0034677659
-
Conformation of the RNA polymerase II C-terminal domain: circular dichroism of long and short fragments
-
Bienkiewicz EA, Moon Woody A, Woody RW. 2000. Conformation of the RNA polymerase II C-terminal domain: circular dichroism of long and short fragments. J. Mol. Biol. 297:119-133. http://dx.doi.org/10.1006/jmbi.2000.3545.
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 119-133
-
-
Bienkiewicz, E.A.1
Moon Woody, A.2
Woody, R.W.3
-
166
-
-
84871402053
-
The CTD code of R.N.A polymerase I.I: a structural view.
-
Jasnovidova O, SteflR. 2013. The CTD code of RNA polymerase II: a structural view. Wiley Interdiscip. Rev. RNA4:1-16. http://dx.doi.org/10.1002/wrna.1138.
-
(2013)
Wiley Interdiscip. Rev. R.N.A
, vol.4
, pp. 1-16
-
-
Jasnovidova, O.1
Stefl, R.2
-
167
-
-
79953127123
-
cis-proline-mediated Ser(P)5 dephosphorylation by the RNA polymerase II C-terminal domain phosphatase Ssu72
-
Werner-Allen JW, Lee C-J, Liu P, Nicely NI, Wang S, Greenleaf AL, Zhou P. 2011. cis-proline-mediated Ser(P)5 dephosphorylation by the RNA polymerase II C-terminal domain phosphatase Ssu72. J. Biol. Chem. 286:5717-5726. http://dx.doi.org/10.1074/jbc. M110.197129.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 5717-5726
-
-
Werner-Allen, J.W.1
Lee, C.-J.2
Liu, P.3
Nicely, N.I.4
Wang, S.5
Greenleaf, A.L.6
Zhou, P.7
-
168
-
-
84857761249
-
Pre-mRNA 3'-end processing complex assembly and function.
-
Chan S, Choi E-A, Shi Y. 2011. Pre-mRNA 3'-end processing complex assembly and function. Wiley Interdiscip. Rev. RNA2:321-335. http://dx.doi.org/10.1002/wrna.54.
-
(2011)
Wiley Interdiscip. Rev. RNA
, vol.2
, pp. 321-335
-
-
Chan, S.1
Choi, E.-A.2
Shi, Y.3
-
169
-
-
0025787944
-
Cloning and expression of the essential gene for poly(A) polymerase from S
-
Lingner J, Kellermann J, Keller W. 1991. Cloning and expression of the essential gene for poly(A) polymerase from S. cerevisiae. Nature 354: 496-498. http://dx.doi.org/10.1038/354496a0.
-
(1991)
cerevisiae. Nature
, vol.354
, pp. 496-498
-
-
Lingner, J.1
Kellermann, J.2
Keller, W.3
-
170
-
-
0025871846
-
Primary structure and expression of bovine poly(A) polymerase
-
Raabe T, Bollum FJ, Manley JL. 1991. Primary structure and expression of bovine poly(A) polymerase. Nature 353:229-234. http://dx.doi.org/10.1038/353229a0.
-
(1991)
Nature
, vol.353
, pp. 229-234
-
-
Raabe, T.1
Bollum, F.J.2
Manley, J.L.3
-
171
-
-
0025907963
-
Purification and characterization of a mammalian polyadenylate polymerase involved in the 3' end processing of messenger RNA precursors
-
Wahle E. 1991. Purification and characterization of a mammalian polyadenylate polymerase involved in the 3' end processing of messenger RNA precursors. J. Biol. Chem. 266:3131-3139.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 3131-3139
-
-
Wahle, E.1
-
172
-
-
0025280060
-
Polyadenylate polymerases
-
Edmonds M. 1990. Polyadenylate polymerases. Methods Enzymol. 181: 161-170. http://dx.doi.org/10.1016/0076-6879(90)81118-E.
-
(1990)
Methods Enzymol.
, vol.181
, pp. 161-170
-
-
Edmonds, M.1
-
173
-
-
0029962371
-
Mutational analysis of mammalian poly(A) polymerase identifies a region for primer binding and catalytic domain, homologous to the family X polymerases, and to other nucleotidyltransferases
-
Martin G, Keller W. 1996. Mutational analysis of mammalian poly(A) polymerase identifies a region for primer binding and catalytic domain, homologous to the family X polymerases, and to other nucleotidyltransferases. EMBO J. 15:2593-2603.
-
(1996)
EMBO J.
, vol.15
, pp. 2593-2603
-
-
Martin, G.1
Keller, W.2
-
174
-
-
0034664049
-
Crystal structure of mammalian poly(A) polymerase in complex with an analog of ATP
-
Martin G, Keller W, Doublié S. 2000. Crystal structure of mammalian poly(A) polymerase in complex with an analog of ATP. EMBO J. 19: 4193-4203. http://dx.doi.org/10.1093/emboj/19.16.4193.
-
(2000)
EMBO J.
, vol.19
, pp. 4193-4203
-
-
Martin, G.1
Keller, W.2
Doublié, S.3
-
175
-
-
0034714329
-
Structure of yeast poly(A) polymerase alone and in complex with 3'-dATP
-
Bard J, Zhelkovsky AM, Helmling S, Earnest TN, Moore CL, Bohm A. 2000. Structure of yeast poly(A) polymerase alone and in complex with 3'-dATP. Science 289:1346-1349. http://dx.doi.org/10.1126/science.289.5483.1346.
-
(2000)
Science
, vol.289
, pp. 1346-1349
-
-
Bard, J.1
Zhelkovsky, A.M.2
Helmling, S.3
Earnest, T.N.4
Moore, C.L.5
Bohm, A.6
-
176
-
-
34548382114
-
Mechanism of poly(A) polymerase: structure of the enzyme-MgATP-RNA ternary complex and kinetic analysis
-
Balbo PB, Bohm A. 2007. Mechanism of poly(A) polymerase: structure of the enzyme-MgATP-RNA ternary complex and kinetic analysis. Structure 15:1117-1131. http://dx.doi.org/10.1016/j.str.2007.07.010
-
(2007)
Structure
, vol.15
, pp. 1117-1131
-
-
Balbo, P.B.1
Bohm, A.2
-
177
-
-
33846781442
-
X-ray crystallographic and steady state fluorescence characterization of the protein dynamics of yeast polyadenylate polymerase
-
Balbo PB, Toth J, Bohm A. 2007. X-ray crystallographic and steady state fluorescence characterization of the protein dynamics of yeast polyadenylate polymerase. J. Mol. Biol. 366:1401-1415. http://dx.doi.org/10.1016/j.jmb.2006.12.030.
-
(2007)
J. Mol. Biol.
, vol.366
, pp. 1401-1415
-
-
Balbo, P.B.1
Toth, J.2
Bohm, A.3
-
178
-
-
3843067711
-
Biochemical and structural insights into substrate binding and catalytic mechanism of mammalian poly(A) polymerase
-
Martin G, Möglich A, Keller W, Doublié S. 2004. Biochemical and structural insights into substrate binding and catalytic mechanism of mammalian poly(A) polymerase. J. Mol. Biol. 341:911-925. http://dx.doi.org/10.1016/j.jmb.2004.06.047.
-
(2004)
J. Mol. Biol.
, vol.341
, pp. 911-925
-
-
Martin, G.1
Möglich, A.2
Keller, W.3
Doublié, S.4
-
179
-
-
0029978731
-
Complex alternative RNA processing generates an unexpected diversity of poly(A) polymerase isoforms
-
Zhao W, Manley JL. 1996. Complex alternative RNA processing generates an unexpected diversity of poly(A) polymerase isoforms. Mol. Cell. Biol. 16:2378-2386.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 2378-2386
-
-
Zhao, W.1
Manley, J.L.2
-
180
-
-
0029857320
-
Cell-cycle related regulation of poly(A) polymerase by phosphorylation
-
Colgan DF, Murthy KG, Prives C, Manley JL. 1996. Cell-cycle related regulation of poly(A) polymerase by phosphorylation. Nature 384:282-285. http://dx.doi.org/10.1038/384282a0.
-
(1996)
Nature
, vol.384
, pp. 282-285
-
-
Colgan, D.F.1
Murthy, K.G.2
Prives, C.3
Manley, J.L.4
-
181
-
-
33947514003
-
Multiple histone deacetylases and the CREB-binding protein regulate pre-mRNA 3'-end processing
-
Shimazu T, Horinouchi S, Yoshida M. 2007. Multiple histone deacetylases and the CREB-binding protein regulate pre-mRNA 3'-end processing. J. Biol. Chem. 282:4470-4478. http://dx.doi.org/10.1074/jbc. M609745200.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 4470-4478
-
-
Shimazu, T.1
Horinouchi, S.2
Yoshida, M.3
-
182
-
-
39449103526
-
Sumoylation regulates multiple aspects of mammalian poly(A) polymerase function
-
Vethantham V, Rao N, Manley JL. 2008. Sumoylation regulates multiple aspects of mammalian poly(A) polymerase function. Genes Dev. 22:499-511. http://dx.doi.org/10.1101/gad.1628208.
-
(2008)
Genes Dev.
, vol.22
, pp. 499-511
-
-
Vethantham, V.1
Rao, N.2
Manley, J.L.3
-
183
-
-
84872241133
-
PARP1 represses PAP and inhibits polyadenylation during heat shock
-
Di Giammartino DC, Shi Y, Manley JL. 2013. PARP1 represses PAP and inhibits polyadenylation during heat shock. Mol. Cell 49:7-17. http://dx.doi.org/10.1016/j.molcel.2012.11.005.
-
(2013)
Mol. Cell
, vol.49
, pp. 7-17
-
-
Di Giammartino, D.C.1
Shi, Y.2
Manley, J.L.3
-
184
-
-
84859900820
-
Novel interactions at the essential N-terminus of poly(A) polymerase that could regulate poly(A) addition in Saccharomyces cerevisiae
-
Ezeokonkwo C, Ghazy MA, Zhelkovsky A, Yeh P-C, Moore C. 2012. Novel interactions at the essential N-terminus of poly(A) polymerase that could regulate poly(A) addition in Saccharomyces cerevisiae. FEBS Lett. 586:1173-1178. http://dx.doi.org/10.1016/j.febslet.2012.03.036.
-
(2012)
FEBS Lett.
, vol.586
, pp. 1173-1178
-
-
Ezeokonkwo, C.1
Ghazy, M.A.2
Zhelkovsky, A.3
Yeh, P.-C.4
Moore, C.5
-
185
-
-
0035000153
-
Fip1 regulates the activity of poly(A) polymerase through multiple interactions
-
Helmling S, Zhelkovsky A, Moore CL. 2001. Fip1 regulates the activity of poly(A) polymerase through multiple interactions. Mol. Cell. Biol. 21:2026-2037. http://dx.doi.org/10.1128/MCB.21.6.2026-2037.2001.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 2026-2037
-
-
Helmling, S.1
Zhelkovsky, A.2
Moore, C.L.3
-
186
-
-
0015591267
-
A protein of molecular weight 78,000 bound to the polyadenylate region of eukaryotic messenger RNAs
-
Blobel G. 1973. A protein of molecular weight 78,000 bound to the polyadenylate region of eukaryotic messenger RNAs. Proc. Natl. Acad. Sci. U. S. A. 70:924-928. http://dx.doi.org/10.1073/pnas.70.3.924.
-
(1973)
Proc. Natl. Acad. Sci. U. S. A.
, vol.70
, pp. 924-928
-
-
Blobel, G.1
-
187
-
-
0027439688
-
Assembly of a processive messenger RNA polyadenylation complex
-
Bienroth S, Keller W, Wahle E. 1993. Assembly of a processive messenger RNA polyadenylation complex. EMBO J. 12:585-594.
-
(1993)
EMBO J.
, vol.12
, pp. 585-594
-
-
Bienroth, S.1
Keller, W.2
Wahle, E.3
-
188
-
-
0028895435
-
Poly(A) tail length control is caused by termination of processive synthesis
-
Wahle E. 1995. Poly(A) tail length control is caused by termination of processive synthesis. J. Biol. Chem. 270:2800-2808.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 2800-2808
-
-
Wahle, E.1
-
189
-
-
0019398073
-
The role of the poly(A) sequence in mammalian messenger RNA
-
Brawerman G. 1981. The role of the poly(A) sequence in mammalian messenger RNA. CRC Crit. Rev. Biochem. 10:1-38.
-
(1981)
CRC Crit. Rev. Biochem.
, vol.10
, pp. 1-38
-
-
Brawerman, G.1
-
190
-
-
84860317107
-
The poly(A)-binding protein nuclear 1 suppresses alternative cleavage and polyadenylation sites
-
Jenal M, Elkon R, Loayza-Puch F, van Haaften G, Kühn U, Menzies FM, Oude Vrielink JAF, Bos AJ, Drost J, Rooijers K, Rubinsztein DC, Agami R. 2012. The poly(A)-binding protein nuclear 1 suppresses alternative cleavage and polyadenylation sites. Cell 149:538-553. http://dx.doi.org/10.1016/j.cell.2012.03.022.
-
(2012)
Cell
, vol.149
, pp. 538-553
-
-
Jenal, M.1
Elkon, R.2
Loayza-Puch, F.3
van Haaften, G.4
Kühn, U.5
Menzies, F.M.6
Oude Vrielink, J.A.F.7
Bos, A.J.8
Drost, J.9
Rooijers, K.10
Rubinsztein, D.C.11
Agami, R.12
-
191
-
-
0041312652
-
Stimulation of poly(A) polymerase through a direct interaction with the nuclear poly(A) binding protein allosterically regulated by RNA
-
Kerwitz Y, Kühn U, Lilie H, Knoth A, Scheuermann T, Friedrich H, Schwarz E, Wahle E. 2003. Stimulation of poly(A) polymerase through a direct interaction with the nuclear poly(A) binding protein allosterically regulated by RNA. EMBO J. 22:3705-3714. http://dx.doi.org/10.1093/emboj/cdg347.
-
(2003)
EMBO J.
, vol.22
, pp. 3705-3714
-
-
Kerwitz, Y.1
Kühn, U.2
Lilie, H.3
Knoth, A.4
Scheuermann, T.5
Friedrich, H.6
Schwarz, E.7
Wahle, E.8
-
192
-
-
42449108672
-
Crystal structure and possible dimerization of the single RRM of human PABPN1
-
Ge H, Zhou D, Tong S, Gao Y, Teng M, Niu L. 2008. Crystal structure and possible dimerization of the single RRM of human PABPN1. Proteins 71:1539-1545. http://dx.doi.org/10.1002/prot.21973.
-
(2008)
Proteins
, vol.71
, pp. 1539-1545
-
-
Ge, H.1
Zhou, D.2
Tong, S.3
Gao, Y.4
Teng, M.5
Niu, L.6
-
193
-
-
0038607076
-
The RNA binding domains of the nuclear poly(A)-binding protein
-
Kühn U, Nemeth A, Meyer S, Wahle E. 2003. The RNA binding domains of the nuclear poly(A)-binding protein. J. Biol. Chem. 278: 16916-16925. http://dx.doi.org/10.1074/jbc. M209886200.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 16916-16925
-
-
Kühn, U.1
Nemeth, A.2
Meyer, S.3
Wahle, E.4
-
194
-
-
0034737319
-
The nuclear poly(A) binding protein, PABP2, forms an oligomeric particle covering the length of the poly(A) tail
-
Keller RW, Kühn U, Aragón M, Bornikova L, Wahle E, Bear DG. 2000. The nuclear poly(A) binding protein, PABP2, forms an oligomeric particle covering the length of the poly(A) tail. J. Mol. Biol. 297:569-583. http://dx.doi.org/10.1006/jmbi.2000.3572.
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 569-583
-
-
Keller, R.W.1
Kühn, U.2
Aragón, M.3
Bornikova, L.4
Wahle, E.5
Bear, D.G.6
-
195
-
-
0028883487
-
Isolation of genomic and cDNA clones encoding bovine poly(A) binding protein II
-
Nemeth A, Krause S, Blank D, Jenny A, Jenö P, Lustig A, Wahle E. 1995. Isolation of genomic and cDNA clones encoding bovine poly(A) binding protein II. Nucleic Acids Res. 23:4034-4041. http://dx.doi.org/10.1093/nar/23.20.4034.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 4034-4041
-
-
Nemeth, A.1
Krause, S.2
Blank, D.3
Jenny, A.4
Jenö, P.5
Lustig, A.6
Wahle, E.7
-
196
-
-
69249151288
-
Poly(A) tail length is controlled by the nuclear poly(A)-binding protein regulating the interaction between poly(A) polymerase and the cleavage and polyadenylation specificity factor
-
Kühn U, Gündel M, Knoth A, Kerwitz Y, Rüdel S, Wahle E. 2009. Poly(A) tail length is controlled by the nuclear poly(A)-binding protein regulating the interaction between poly(A) polymerase and the cleavage and polyadenylation specificity factor. J. Biol. Chem. 284:22803-22814. http://dx.doi.org/10.1074/jbc. M109.018226.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 22803-22814
-
-
Kühn, U.1
Gündel, M.2
Knoth, A.3
Kerwitz, Y.4
Rüdel, S.5
Wahle, E.6
-
197
-
-
0034698136
-
The Saccharomyces cerevisiae RNA-binding protein Rbp29 functions in cytoplasmic mRNA metabolism
-
Winstall E, Sadowski M, Kuhn U, Wahle E, Sachs AB. 2000. The Saccharomyces cerevisiae RNA-binding protein Rbp29 functions in cytoplasmic mRNA metabolism. J. Biol. Chem. 275:21817-21826. http://dx.doi.org/10.1074/jbc. M002412200.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 21817-21826
-
-
Winstall, E.1
Sadowski, M.2
Kuhn, U.3
Wahle, E.4
Sachs, A.B.5
-
198
-
-
2442482777
-
Structure and function of poly(A) binding proteins
-
Kühn U, Wahle E. 2004. Structure and function of poly(A) binding proteins. Biochim. Biophys. Acta 1678:67-84. http://dx.doi.org/10.1016/j.bbaexp.2004.03.008.
-
(2004)
Biochim. Biophys. Acta
, vol.1678
, pp. 67-84
-
-
Kühn, U.1
Wahle, E.2
-
199
-
-
84884621009
-
Novel modifications on C-terminal domain of RNA polymerase II can fine-tune the phosphatase activity of Ssu72.
-
Luo Y, Yogesha SD, Cannon JR, Yan W, Ellington AD, Brodbelt JS, Zhang Y. 2013. Novel modifications on C-terminal domain of RNA polymerase II can fine-tune the phosphatase activity of Ssu72. ACS Chem. Biol. 8:2042-2052. http://dx.doi.org/10.1021/cb400229c.
-
(2013)
ACS Chem. Biol.
, vol.8
, pp. 2042-2052
-
-
Luo, Y.1
Yogesha, S.D.2
Cannon, J.R.3
Yan, W.4
Ellington, A.D.5
Brodbelt, J.S.6
Zhang, Y.7
|