Interrelations between the nucleotide context of human start aug codon, n-end amino acids of the encoded protein and initiation of translation

Journal of Biomolecular Structure and Dynamics

Volumn 27, Issue 5, 2010, Pages 611-618

  Volkova, Oxana A ^a,b   Kochetov, Alex V ^a,b  

^a INSTITUTE OF CYTOLOGY AND GENETICS   (Russian Federation)

^b NOVOSIBIRSK STATE UNIVERSITY   (Russian Federation)

Author keywords

Amino acids; AUG; Context; Human mRNA; Initiation of Translation; Start Codon

Indexed keywords

ADENINE; AMINO ACID; GLYCINE; GUANINE; MESSENGER RNA; PYRIMIDINE;

AMINO TERMINAL SEQUENCE; ARTICLE; CODON; DNA SEQUENCE; EUKARYOTE; GENE FREQUENCY; GENETIC VARIABILITY; HUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RIBOSOME; RNA TRANSLATION; TRANSLATION INITIATION;

EUKARYOTA;

EID: 76749108599     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2010.10508575     Document Type: Article

References (31)

1. Kozak, M., 2005. Gene, 361:13–37.
2. Pisarev, A., Kolupaeva, V., Pisareva, V., Merrick, W., Hellen, C., and Pestova, T., 2006. Genes Dev, 20:624–636.
3. Niimura, Y., Terabe, M., Gojobori, T., and Miura, K., 2003. Nucleic Acids Res, 31:5195–5201.
4. Nakagawa, S., Niimura, Y., Gojobori, T., Tanaka, H., and Miura, K., 2008. Nucleic Acids Res, 36:861–871.
5. Grunert, S., and Jackson, R. J., 1994. EMBO J, 13:3618–3630.
6. Boeck, R., and Kolakofsky, D. D., 1994. EMBO J, 13:3608–3617.
7. Kozak, M., 1997. EMBO J, 16:2482–2492.
8. Harkins, S., Cornell, C. T., and Whitton, J. L., 2005. J Virol, 79:987–996.
9. Xia, X., 2007. PLoS ONE, 2:188
10. Varshavsky, A., 1996. Proc Natl Acad Sci USA, 93:12142–12149.
11. Farazi, T., Waksman, G., and Gordon, J., 2001. J Biol chem, 276:39501–39504.
12. Kochetov, A. V., 2005. Bioinformatics, 21:837–840.
13. Kochetov, A. V., 2008. BioEssays, 30:683–691.
14. Grillo, G., Attimonelli, M., Liuni, S., and Pesole, G., 1996. comp Appl Biosci, 12:1–8.
15. Kochetov, A. V., Sarai, A., Rogozin, I. B., Shumny, V. K., and Kolchanov, N. A., 2005. Mol Genet Genomics, 273:491–496.
16. Sabbia, V., Romero, H., Musto, H., and Naya, H., 2009. J Biomol Struct Dyn, 27:361–370.
17. Zheng, W. X., and Zhang, C. T., 2008. J Biomol Struct Dyn, 25:327–336.
18. Tats, A., Remm, M., and Tenson, T., 2006. BMC Genomics, 7:28
19. Sawant, S. V., Kiran, K., Singh, P. K., and Tuli, R., 2001. Plant Physiol, 126:1630–1636.
20. Boissel, J. P., Kasper, T. J., and Bunn, H. F., 1988. J Biol chem, 263:8443–8449.
21. Arfin, S. M., Kendall, R. L., Hall, L., Weaver, L. H., Stewart, A. E., Matthews, B. W., and Bradshow, R. A., 1995. Proc Natl Acad Sci USA, 92:7714–7718.
22. Kochetov, A. V., Ischenko, I. V., Vorobiev, D. G., Kel, A. E., Babenko, V. N., Kisselev, L. L., and Kolchanov, N. A., 1998. FEBS Lett, 440:351–355.
23. Rogozin, I. B., Kochetov, A. V., Kondrashov, F. A., Koonin, E. V., and Milanezi, L., 2001. Bioinformatics, 17:890–900.
24. Kochetov, A. V., Ahmad, S., Ivanisenko, V., Volkova, O. A., Kolchanov, N. A., and Sarai, A., 2008. FEBS Lett, 582:1293–1297.
25. Mottagui-Tabar, S., and Isaksson, L. A., 1997. FEBS Lett, 414:165–170.
26. Janzen, D. M., Frolova, L., and Geballe, A. P., 2002. Mol Cell Biol, 22:8562–8570.
27. Lu, J., and Deutsch, C., 2008. J Mol Biol, 384:73–86.
28. Milon, P., Konevega, A. L., Gualerzi, C. O., and Rodnina, M. V., 2008. Mol Cell, 30:712–720.
29. Kahali, B., Basak, S., and Ghosh, T. C., 2008. J Biomol Struct Dyn, 25:655–661.
30. Meinnel, T., Peynot, P., and Giglione, C., 2005. Biochimie, 87:701–712.
31. Rapoport, A. E., and Trifonov, E. N., 2008. J Biomol Struct Dyn, 25:647–653.