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Volumn 42, Issue 7, 2014, Pages 4375-4390

Direct activation of human and mouse Oct4 genes using engineered TALE and Cas9 transcription factors

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE ACETYLTRANSFERASE PCAF; LUCIFERASE; OCTAMER TRANSCRIPTION FACTOR 4; RNA; SMALL GUIDE RNA; TRANSCRIPTION ACTIVATOR LIKE EFFECTOR PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR CAS9; UNCLASSIFIED DRUG;

EID: 84898998655     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku109     Document Type: Article
Times cited : (129)

References (61)
  • 1
    • 0037338381 scopus 로고    scopus 로고
    • Scanning the human genome with combinatorial transcription factor libraries
    • DOI 10.1038/nbt794
    • Blancafort, P., Magnenat, L. and Barbas, C.F. 3rd (2003) Scanning the human genome with combinatorial transcription factor libraries. Nat. Biotechnol., 21, 269-274. (Pubitemid 36314810)
    • (2003) Nature Biotechnology , vol.21 , Issue.3 , pp. 269-274
    • Blancafort, P.1    Magnenat, L.2    Barbas III, C.F.3
  • 2
    • 0023697252 scopus 로고
    • GAL4-VP16 is an unusually potent transcriptional activator
    • Sadowski, I., Ma, J., Triezenberg, S. and Ptashne, M. (1988) GAL4-VP16 is an unusually potent transcriptional activator. Nature, 335, 563-564.
    • (1988) Nature , vol.335 , pp. 563-564
    • Sadowski, I.1    Ma, J.2    Triezenberg, S.3    Ptashne, M.4
  • 3
    • 0032170171 scopus 로고    scopus 로고
    • Tetracycline repressor, tetR, rather than the tetR-mammalian cell transcription factor fusion derivatives, regulates inducible gene expression in mammalian cells
    • Yao, F., Svensjo, T., Winkler, T., Lu, M., Eriksson, C. and Eriksson, E. (1998) Tetracycline repressor, tetR, rather than the tetR-mammalian cell transcription factor fusion derivatives, regulates inducible gene expression in mammalian cells. Hum. Gene Ther., 9, 1939-1950. (Pubitemid 28439099)
    • (1998) Human Gene Therapy , vol.9 , Issue.13 , pp. 1939-1950
    • Yao, F.1    Svensjo, T.2    Winkler, T.3    Lu, M.4    Eriksson, C.5    Eriksson, E.6
  • 6
    • 72149090954 scopus 로고    scopus 로고
    • A simple cipher governs DNA recognition by TAL effectors
    • Moscou, M.J. and Bogdanove, A.J. (2009) A simple cipher governs DNA recognition by TAL effectors. Science, 326, 1501.
    • (2009) Science , vol.326 , pp. 1501
    • Moscou, M.J.1    Bogdanove, A.J.2
  • 7
    • 84864856835 scopus 로고    scopus 로고
    • Comprehensive interrogation of natural TALE DNA-binding modules and transcriptional repressor domains
    • Cong, L., Zhou, R., Kuo, Y.C., Cunniff, M. and Zhang, F. (2012) Comprehensive interrogation of natural TALE DNA-binding modules and transcriptional repressor domains. Nat. Commun., 3, 968.
    • (2012) Nat. Commun. , vol.3 , pp. 968
    • Cong, L.1    Zhou, R.2    Kuo, Y.C.3    Cunniff, M.4    Zhang, F.5
  • 9
    • 0028183181 scopus 로고
    • The Kruppel-associated box-A (KRAB-A) domain of zinc finger proteins mediates transcriptional repression
    • Witzgall, R., O'Leary, E., Leaf, A., Onaldi, D. and Bonventre, J.V. (1994) The Kruppel-associated box-A (KRAB-A) domain of zinc finger proteins mediates transcriptional repression. Proc. Natl Acad. Sci. USA, 91, 4514-4518.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 4514-4518
    • Witzgall, R.1    O'Leary, E.2    Leaf, A.3    Onaldi, D.4    Bonventre, J.V.5
  • 10
    • 79751487297 scopus 로고    scopus 로고
    • Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription
    • Zhang, F., Cong, L., Lodato, S., Kosuri, S., Church, G.M. and Arlotta, P. (2011) Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription. Nat. Biotechnol., 29, 149-153.
    • (2011) Nat. Biotechnol. , vol.29 , pp. 149-153
    • Zhang, F.1    Cong, L.2    Lodato, S.3    Kosuri, S.4    Church, G.M.5    Arlotta, P.6
  • 11
    • 84870786425 scopus 로고    scopus 로고
    • Transcription activator-like effector hybrids for conditional control and rewiring of chromosomal transgene expression
    • Li, Y., Moore, R., Guinn, M. and Bleris, L. (2012) Transcription activator-like effector hybrids for conditional control and rewiring of chromosomal transgene expression. Sci. Rep., 2, 897.
    • (2012) Sci. Rep. , vol.2 , pp. 897
    • Li, Y.1    Moore, R.2    Guinn, M.3    Bleris, L.4
  • 12
    • 80755187812 scopus 로고    scopus 로고
    • CRISPR-Cas systems in bacteria and archaea: Versatile small RNAs for adaptive defense and regulation
    • Bhaya, D., Davison, M. and Barrangou, R. (2011) CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation. Annu. Rev. Genet., 45, 273-297.
    • (2011) Annu. Rev. Genet. , vol.45 , pp. 273-297
    • Bhaya, D.1    Davison, M.2    Barrangou, R.3
  • 13
    • 84857097177 scopus 로고    scopus 로고
    • RNA-guided genetic silencing systems in bacteria and archaea
    • Wiedenheft, B., Sternberg, S.H. and Doudna, J.A. (2012) RNA-guided genetic silencing systems in bacteria and archaea. Nature, 482, 331-338.
    • (2012) Nature , vol.482 , pp. 331-338
    • Wiedenheft, B.1    Sternberg, S.H.2    Doudna, J.A.3
  • 14
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J.A. and Charpentier, E. (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science, 337, 816-821.
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5    Charpentier, E.6
  • 16
    • 84877707375 scopus 로고    scopus 로고
    • One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering
    • Wang, H., Yang, H., Shivalila, C.S., Dawlaty, M.M., Cheng, A.W., Zhang, F. and Jaenisch, R. (2013) One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering. Cell, 153, 910-918.
    • (2013) Cell , vol.153 , pp. 910-918
    • Wang, H.1    Yang, H.2    Shivalila, C.S.3    Dawlaty, M.M.4    Cheng, A.W.5    Zhang, F.6    Jaenisch, R.7
  • 19
    • 84874687019 scopus 로고    scopus 로고
    • Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression
    • Qi, L.S., Larson, M.H., Gilbert, L.A., Doudna, J.A., Weissman, J.S., Arkin, A.P. and Lim, W.A. (2013) Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression. Cell, 152, 1173-1183.
    • (2013) Cell , vol.152 , pp. 1173-1183
    • Qi, L.S.1    Larson, M.H.2    Gilbert, L.A.3    Doudna, J.A.4    Weissman, J.S.5    Arkin, A.P.6    Lim, W.A.7
  • 20
    • 84882986957 scopus 로고    scopus 로고
    • Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system
    • Bikard, D., Jiang, W., Samai, P., Hochschild, A., Zhang, F. and Marraffini, L.A. (2013) Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system. Nucleic Acids Res., 141, 7429-7437.
    • (2013) Nucleic Acids Res. , vol.141 , pp. 7429-7437
    • Bikard, D.1    Jiang, W.2    Samai, P.3    Hochschild, A.4    Zhang, F.5    Marraffini, L.A.6
  • 21
    • 0032582513 scopus 로고    scopus 로고
    • Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4
    • DOI 10.1016/S0092-8674(00)81769-9
    • Nichols, J., Zevnik, B., Anastassiadis, K., Niwa, H., Klewe-Nebenius, D., Chambers, I., Scholer, H. and Smith, A. (1998) Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4. Cell, 95, 379-391. (Pubitemid 28507326)
    • (1998) Cell , vol.95 , Issue.3 , pp. 379-391
    • Nichols, J.1    Zevnik, B.2    Anastassiadis, K.3    Niwa, H.4    Klewe-Nebenius, D.5    Chambers, I.6    Scholer, H.7    Smith, A.8
  • 22
    • 0034028901 scopus 로고    scopus 로고
    • Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells
    • DOI 10.1038/74199
    • Niwa, H., Miyazaki, J. and Smith, A.G. (2000) Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells. Nat. Genet., 24, 372-376. (Pubitemid 30187435)
    • (2000) Nature Genetics , vol.24 , Issue.4 , pp. 372-376
    • Niwa, H.1    Miyazaki, J.-I.2    Smith, A.G.3
  • 23
    • 33747195353 scopus 로고    scopus 로고
    • Induction of Pluripotent Stem Cells from Mouse Embryonic and Adult Fibroblast Cultures by Defined Factors
    • DOI 10.1016/j.cell.2006.07.024, PII S0092867406009767
    • Takahashi, K. and Yamanaka, S. (2006) Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell, 126, 663-676. (Pubitemid 44233629)
    • (2006) Cell , vol.126 , Issue.4 , pp. 663-676
    • Takahashi, K.1    Yamanaka, S.2
  • 24
    • 36248966518 scopus 로고    scopus 로고
    • Induction of Pluripotent Stem Cells from Adult Human Fibroblasts by Defined Factors
    • DOI 10.1016/j.cell.2007.11.019, PII S0092867407014717
    • Takahashi, K., Tanabe, K., Ohnuki, M., Narita, M., Ichisaka, T., Tomoda, K. and Yamanaka, S. (2007) Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell, 131, 861-872. (Pubitemid 350138099)
    • (2007) Cell , vol.131 , Issue.5 , pp. 861-872
    • Takahashi, K.1    Tanabe, K.2    Ohnuki, M.3    Narita, M.4    Ichisaka, T.5    Tomoda, K.6    Yamanaka, S.7
  • 26
    • 0029865895 scopus 로고    scopus 로고
    • Germline regulatory element of Oct-4 specific for the totipotent cycle of embryonal cells
    • Yeom, Y.I., Fuhrmann, G., Ovitt, C.E., Brehm, A., Ohbo, K., Gross, M., Hubner, K. and Scholer, H.R. (1996) Germline regulatory element of Oct-4 specific for the totipotent cycle of embryonal cells. Development, 122, 881-894. (Pubitemid 26095994)
    • (1996) Development , vol.122 , Issue.3 , pp. 881-894
    • Yeom, Y.I.I.1    Fuhrmann, G.2    Ovitt, C.E.3    Brehm, A.4    Ohbo, K.5    Gross, M.6    Hubner, K.7    Scholer, H.R.8
  • 27
    • 0035076259 scopus 로고    scopus 로고
    • Comparative analysis of human, bovine, and murine Oct-4 upstream promoter sequences
    • DOI 10.1007/s003350010279
    • Nordhoff, V., Hubner, K., Bauer, A., Orlova, I., Malapetsa, A. and Scholer, H.R. (2001) Comparative analysis of human, bovine, and murine Oct-4 upstream promoter sequences. Mamm. Genome Official J. Int. Mamm. Genome Soc., 12, 309-317. (Pubitemid 32242892)
    • (2001) Mammalian Genome , vol.12 , Issue.4 , pp. 309-317
    • Nordhoff, V.1    Hubner, K.2    Bauer, A.3    Orlova, I.4    Malapetsa, A.5    Scholer, H.R.6
  • 28
    • 34248141152 scopus 로고    scopus 로고
    • Epigenetic reprogramming of OCT4 and NANOG regulatory regions by embryonal carcinoma cell extract
    • DOI 10.1091/mbc.E07-01-0029
    • Freberg, C.T., Dahl, J.A., Timoskainen, S. and Collas, P. (2007) Epigenetic reprogramming of OCT4 and NANOG regulatory regions by embryonal carcinoma cell extract. Mol. Biol. Cell, 18, 1543-1553. (Pubitemid 46717539)
    • (2007) Molecular Biology of the Cell , vol.18 , Issue.5 , pp. 1543-1553
    • Freberg, C.T.1    Dahl, J.A.2    Timoskainen, S.3    Collas, P.4
  • 29
    • 70350627509 scopus 로고    scopus 로고
    • Epigenetic reversion of post-implantation epiblast to pluripotent embryonic stem cells
    • Bao, S., Tang, F., Li, X., Hayashi, K., Gillich, A., Lao, K. and Surani, M.A. (2009) Epigenetic reversion of post-implantation epiblast to pluripotent embryonic stem cells. Nature, 461, 1292-1295.
    • (2009) Nature , vol.461 , pp. 1292-1295
    • Bao, S.1    Tang, F.2    Li, X.3    Hayashi, K.4    Gillich, A.5    Lao, K.6    Surani, M.A.7
  • 31
    • 84863201964 scopus 로고    scopus 로고
    • Targeted transcriptional activation of silent oct4 pluripotency gene by combining designer TALEs and inhibition of epigenetic modifiers
    • Bultmann, S., Morbitzer, R., Schmidt, C.S., Thanisch, K., Spada, F., Elsaesser, J., Lahaye, T. and Leonhardt, H. (2012) Targeted transcriptional activation of silent oct4 pluripotency gene by combining designer TALEs and inhibition of epigenetic modifiers. Nucleic Acids Res., 40, 5368-5377.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 5368-5377
    • Bultmann, S.1    Morbitzer, R.2    Schmidt, C.S.3    Thanisch, K.4    Spada, F.5    Elsaesser, J.6    Lahaye, T.7    Leonhardt, H.8
  • 32
    • 84881336110 scopus 로고    scopus 로고
    • Reprogramming to Pluripotency Using Designer TALE Transcription Factors Targeting Enhancers
    • Gao, X., Yang, J., Tsang, J.C.H., Ooi, J., Wu, D. and Liu, P. (2013) Reprogramming to Pluripotency Using Designer TALE Transcription Factors Targeting Enhancers. Stem. Cell Reports, 1, 183-197.
    • (2013) Stem. Cell Reports , vol.1 , pp. 183-197
    • Gao, X.1    Yang, J.2    Tsang, J.C.H.3    Ooi, J.4    Wu, D.5    Liu, P.6
  • 37
    • 84884160273 scopus 로고    scopus 로고
    • CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering
    • Mali, P., Aach, J., Stranges, P.B., Esvelt, K.M., Moosburner, M., Kosuri, S., Yang, L. and Church, G.M. (2013) CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nat. Biotechnol., 31, 833-838.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 833-838
    • Mali, P.1    Aach, J.2    Stranges, P.B.3    Esvelt, K.M.4    Moosburner, M.5    Kosuri, S.6    Yang, L.7    Church, G.M.8
  • 40
    • 40849089190 scopus 로고    scopus 로고
    • A one-step PCR-based method for rapid and efficient site-directed fragment deletion, insertion, and substitution mutagenesis
    • Qi, D. and Scholthof, K.B. (2008) A one-step PCR-based method for rapid and efficient site-directed fragment deletion, insertion, and substitution mutagenesis. J. Virol. Methods, 149, 85-90.
    • (2008) J. Virol. Methods , vol.149 , pp. 85-90
    • Qi, D.1    Scholthof, K.B.2
  • 41
    • 50849144675 scopus 로고    scopus 로고
    • A drug-inducible system for direct reprogramming of human somatic cells to pluripotency
    • Hockemeyer, D., Soldner, F., Cook, E.G., Gao, Q., Mitalipova, M. and Jaenisch, R. (2008) A drug-inducible system for direct reprogramming of human somatic cells to pluripotency. Cell Stem. Cell, 3, 346-353.
    • (2008) Cell Stem. Cell , vol.3 , pp. 346-353
    • Hockemeyer, D.1    Soldner, F.2    Cook, E.G.3    Gao, Q.4    Mitalipova, M.5    Jaenisch, R.6
  • 43
    • 84867904873 scopus 로고    scopus 로고
    • Efficient targeted gene disruption in Xenopus embryos using engineered transcription activator-like effector nucleases (TALENs)
    • Lei, Y., Guo, X., Liu, Y., Cao, Y., Deng, Y., Chen, X., Cheng, C.H., Dawid, I.B., Chen, Y. and Zhao, H. (2012) Efficient targeted gene disruption in Xenopus embryos using engineered transcription activator-like effector nucleases (TALENs). Proc. Natl Acad. Sci. USA, 109, 17484-17489.
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 17484-17489
    • Lei, Y.1    Guo, X.2    Liu, Y.3    Cao, Y.4    Deng, Y.5    Chen, X.6    Cheng, C.H.7    Dawid, I.B.8    Chen, Y.9    Zhao, H.10
  • 48
    • 0043210428 scopus 로고    scopus 로고
    • Conditional suppression of cellular genes: Lentivirus vector-mediated drug-inducible RNA interference
    • DOI 10.1128/JVI.77.16.8957-8951.2003
    • Wiznerowicz, M. and Trono, D. (2003) Conditional suppression of cellular genes: lentivirus vector-mediated drug-inducible RNA interference. J. Virol., 77, 8957-8961. (Pubitemid 36936105)
    • (2003) Journal of Virology , vol.77 , Issue.16 , pp. 8957-8961
    • Wiznerowicz, M.1    Trono, D.2
  • 52
    • 34848815014 scopus 로고    scopus 로고
    • H3K27 Demethylases, at Long Last
    • DOI 10.1016/j.cell.2007.09.026, PII S0092867407012159
    • Swigut, T. and Wysocka, J. (2007) H3K27 demethylases, at long last. Cell, 131, 29-32. (Pubitemid 47498542)
    • (2007) Cell , vol.131 , Issue.1 , pp. 29-32
    • Swigut, T.1    Wysocka, J.2
  • 53
    • 84877861510 scopus 로고    scopus 로고
    • KDM4/JMJD2 histone demethylases: Epigenetic regulators in cancer cells
    • Berry, W.L. and Janknecht, R. (2013) KDM4/JMJD2 histone demethylases: epigenetic regulators in cancer cells. Cancer Res., 73, 2936-2942.
    • (2013) Cancer Res. , vol.73 , pp. 2936-2942
    • Berry, W.L.1    Janknecht, R.2
  • 54
    • 0030606239 scopus 로고    scopus 로고
    • The transcriptional coactivators p300 and CBP are histone acetyltransferases
    • DOI 10.1016/S0092-8674(00)82001-2
    • Ogryzko, V.V., Schiltz, R.L., Russanova, V., Howard, B.H. and Nakatani, Y. (1996) The transcriptional coactivators p300 and CBP are histone acetyltransferases. Cell, 87, 953-959. (Pubitemid 26404293)
    • (1996) Cell , vol.87 , Issue.5 , pp. 953-959
    • Ogryzko, V.V.1    Schiltz, R.L.2    Russanova, V.3    Howard, B.H.4    Nakatani, Y.5
  • 55
    • 0030806420 scopus 로고    scopus 로고
    • The VP16 paradox: Herpes simplex virus VP16 contains a long-range activation domain but within the natural multiprotein complex activates only from promoter-proximal positions
    • Hagmann, M., Georgiev, O. and Schaffner, W. (1997) The VP16 paradox: herpes simplex virus VP16 contains a long-range activation domain but within the natural multiprotein complex activates only from promoter-proximal positions. J. Virol., 71, 5952-5962. (Pubitemid 27304932)
    • (1997) Journal of Virology , vol.71 , Issue.8 , pp. 5952-5962
    • Hagmann, M.1    Georgiev, O.2    Schaffner, W.3
  • 56
    • 84865252679 scopus 로고    scopus 로고
    • Transcription activator-like effector proteins induce the expression of the frataxin gene
    • Tremblay, J.P., Chapdelaine, P., Coulombe, Z. and Rousseau, J. (2012) Transcription activator-like effector proteins induce the expression of the frataxin gene. Hum. Gene Ther., 23, 883-890.
    • (2012) Hum. Gene Ther. , vol.23 , pp. 883-890
    • Tremblay, J.P.1    Chapdelaine, P.2    Coulombe, Z.3    Rousseau, J.4
  • 57
    • 3242668246 scopus 로고    scopus 로고
    • TFIIB-facilitated recruitment of preinitiation complexes by a TAF-independent mechanism
    • DOI 10.1093/nar/gkh711
    • Hori, R.T., Xu, S., Hu, X. and Pyo, S. (2004) TFIIB-facilitated recruitment of preinitiation complexes by a TAF-independent mechanism. Nucleic Acids Res., 32, 3856-3863. (Pubitemid 39199078)
    • (2004) Nucleic Acids Research , vol.32 , Issue.13 , pp. 3856-3863
    • Hori, R.T.1    Xu, S.2    Hu, X.3    Pyo, S.4
  • 58
    • 0034916613 scopus 로고    scopus 로고
    • P300/CBP proteins: HATs for transcriptional bridges and scaffolds
    • Chan, H.M. and La Thangue, N.B. (2001) p300/CBP proteins: HATs for transcriptional bridges and scaffolds. J. Cell Sci., 114, 2363-2373. (Pubitemid 32684792)
    • (2001) Journal of Cell Science , vol.114 , Issue.13 , pp. 2363-2373
    • Chan, H.M.1    La Thangue, N.B.2
  • 61
    • 79956318370 scopus 로고    scopus 로고
    • De novo DNA methylation by Dnmt3a and Dnmt3b is dispensable for nuclear reprogramming of somatic cells to a pluripotent state
    • Pawlak, M. and Jaenisch, R. (2011) De novo DNA methylation by Dnmt3a and Dnmt3b is dispensable for nuclear reprogramming of somatic cells to a pluripotent state. Genes Dev., 25, 1035-1040.
    • (2011) Genes Dev. , vol.25 , pp. 1035-1040
    • Pawlak, M.1    Jaenisch, R.2


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