-
1
-
-
0023359532
-
Applications of recombinant DNA in biotechnology
-
McPherson, M. J. & Parish, J. H. Applications of recombinant DNA in biotechnology. Nat. Prod. Rep. 4, 205-224 (1987).
-
(1987)
Nat. Prod. Rep
, vol.4
, pp. 205-224
-
-
McPherson, M.J.1
Parish, J.H.2
-
2
-
-
0024329296
-
Biotechnology - The golden age
-
Malik, V. S. Biotechnology - the golden age. Adv. Appl. Microbiol. 34, 263-306 (1989).
-
(1989)
Adv. Appl. Microbiol
, vol.34
, pp. 263-306
-
-
Malik, V.S.1
-
3
-
-
0028566365
-
The behavior of bacteria designed for biodegradation
-
Ramos, J. L. et al. The behavior of bacteria designed for biodegradation. Biotechnology 12, 1349-1356 (1994).
-
(1994)
Biotechnology
, vol.12
, pp. 1349-1356
-
-
Ramos, J.L.1
-
4
-
-
0034075043
-
Engineering bacteria for bioremediation
-
Pieper, D. H. & Reineke, W. Engineering bacteria for bioremediation. Curr. Opin. Biotechnol. 11, 262-270 (2000).
-
(2000)
Curr. Opin. Biotechnol
, vol.11
, pp. 262-270
-
-
Pieper, D.H.1
Reineke, W.2
-
5
-
-
28644444340
-
Bacterial degradation of xenobiotic compounds: Evolution and distribution of novel enzyme activities
-
Janssen, D. B., Dinkla, I. J., Poelarends, G. J. & Terpstra, P. Bacterial degradation of xenobiotic compounds: evolution and distribution of novel enzyme activities. Environ. Microbiol. 7, 1868-1882 (2005).
-
(2005)
Environ. Microbiol
, vol.7
, pp. 1868-1882
-
-
Janssen, D.B.1
Dinkla, I.J.2
Poelarends, G.J.3
Terpstra, P.4
-
6
-
-
55249114699
-
Metagenomics for mining new genetic resources of microbial communities
-
Ferrer, M., Beloqui, A., Timmis, K. N. & Golyshin, P. N. Metagenomics for mining new genetic resources of microbial communities. J. Mol. Microbiol. Biotechnol. 16, 109-123 (2009).
-
(2009)
J. Mol. Microbiol. Biotechnol
, vol.16
, pp. 109-123
-
-
Ferrer, M.1
Beloqui, A.2
Timmis, K.N.3
Golyshin, P.N.4
-
7
-
-
77953642931
-
High-throughput metabolic engineering: Advances in small-molecule screening and selection
-
Dietrich, J. A., McKee, A. E. & Keasling, J. D. High-throughput metabolic engineering: advances in small-molecule screening and selection. Annu. Rev. Biochem. 79, 563-590 (2010).
-
(2010)
Annu. Rev. Biochem
, vol.79
, pp. 563-590
-
-
Dietrich, J.A.1
McKee, A.E.2
Keasling, J.D.3
-
8
-
-
24944526639
-
Exploring the microbial biodegradation and biotransformation gene pool
-
Galvão, T. C., Mohn, W. W. & de Lorenzo, V. Exploring the microbial biodegradation and biotransformation gene pool. Trends Biotechnol. 23, 497-506 (2005).
-
(2005)
Trends Biotechnol
, vol.23
, pp. 497-506
-
-
Galvão, T.C.1
Mohn, W.W.2
De Lorenzo, V.3
-
9
-
-
73849152593
-
Metagenomic gene discovery: How far have we moved into novel sequence space?
-
Tuffin, M., Anderson, D., Heath, C. & Cowan, D. A. Metagenomic gene discovery: how far have we moved into novel sequence space? Biotechnol. J. 4, 1671-1683 (2009).
-
(2009)
Biotechnol. J
, vol.4
, pp. 1671-1683
-
-
Tuffin, M.1
Anderson, D.2
Heath, C.3
Cowan, D.A.4
-
10
-
-
66249088017
-
The second wave of synthetic biology: From modules to systems
-
Purnick, P. E. & Weiss, R. The second wave of synthetic biology: from modules to systems. Nature Rev. Mol. Cell. Biol. 10, 410-422 (2009).
-
(2009)
Nature Rev. Mol. Cell. Biol
, vol.10
, pp. 410-422
-
-
Purnick, P.E.1
Weiss, R.2
-
11
-
-
38749148516
-
Synthetic biology for synthetic chemistry
-
Keasling, J. D. Synthetic biology for synthetic chemistry. ACS Chem. Biol. 3, 64-76 (2008).
-
(2008)
ACS Chem. Biol
, vol.3
, pp. 64-76
-
-
Keasling, J.D.1
-
12
-
-
28544451327
-
Foundations for engineering biology
-
Endy, D. Foundations for engineering biology. Nature 438, 449-453 (2005).
-
(2005)
Nature
, vol.438
, pp. 449-453
-
-
Endy, D.1
-
13
-
-
84863608607
-
Scaling up synthetic biology: Do not forget the chassis
-
Danchin, A. Scaling up synthetic biology: do not forget the chassis. FEBS Lett. 586, 2129-2137 (2012).
-
(2012)
FEBS Lett
, vol.586
, pp. 2129-2137
-
-
Danchin, A.1
-
14
-
-
78751608440
-
Beware of metaphors: Chasses and orthogonality in synthetic biology
-
de Lorenzo, V. Beware of metaphors: chasses and orthogonality in synthetic biology. Bioeng. Bugs 2, 3-7 (2011).
-
(2011)
Bioeng. Bugs
, vol.2
, pp. 3-7
-
-
De Lorenzo, V.1
-
15
-
-
0027169959
-
Animal production - A longstanding biotechnological success
-
Wheeler, M. B. & Campion, D. R. Animal production - a longstanding biotechnological success. Am. J. Clin. Nutr. 58, (Suppl. 2) 276S-281S (1993).
-
(1993)
Am. J. Clin. Nutr
, vol.58
, Issue.SUPPL. 2
-
-
Wheeler, M.B.1
Campion, D.R.2
-
16
-
-
84858279030
-
Construction of microbial cell factories for industrial bioprocesses
-
Sauer, M. & Mattanovich, D. Construction of microbial cell factories for industrial bioprocesses. J. Chem. Technol. Biotechnol. 87, 445-450 (2012).
-
(2012)
J. Chem. Technol. Biotechnol
, vol.87
, pp. 445-450
-
-
Sauer, M.1
Mattanovich, D.2
-
17
-
-
0035843170
-
Industrial biocatalysis today and tomorrow
-
Schmid, A. et al. Industrial biocatalysis today and tomorrow. Nature 409, 258-268 (2001).
-
(2001)
Nature
, vol.409
, pp. 258-268
-
-
Schmid, A.1
-
18
-
-
73949123429
-
Considerations for the design and construction of a synthetic platform cell for biotechnological applications
-
Foley, P. L. & Shuler, M. L. Considerations for the design and construction of a synthetic platform cell for biotechnological applications. Biotechnol. Bioeng. 105, 26-36 (2010).
-
(2010)
Biotechnol. Bioeng
, vol.105
, pp. 26-36
-
-
Foley, P.L.1
Shuler, M.L.2
-
19
-
-
0031862665
-
New insights and novel developments in clostridial acetone/butanol/ isopropanol fermentation
-
Dürre, P. New insights and novel developments in clostridial acetone/butanol/isopropanol fermentation. Appl. Microbiol. Biotechnol. 49, 639-648 (1998).
-
(1998)
Appl. Microbiol. Biotechnol
, vol.49
, pp. 639-648
-
-
Dürre, P.1
-
20
-
-
77955883317
-
-
(ed. Smolke, C.D), CRC Press
-
Karlsson, E. N., Johansson, L., Holst, O. & Lidén, G. in The Metabolic Pathway Engineering Handbook: Fundamentals (ed. Smolke, C.D) 21.21-21.23 (CRC Press, 2010).
-
(2010)
The Metabolic Pathway Engineering Handbook: Fundamentals
, pp. 2121-2123
-
-
Karlsson, E.N.1
Johansson, L.2
Holst, O.3
Lidén, G.4
-
21
-
-
68049085674
-
Evolution of efficient pathways for degradation of anthropogenic chemicals
-
Copley, S. D. Evolution of efficient pathways for degradation of anthropogenic chemicals. Nature Chem. Biol. 5, 559-566 (2009).
-
(2009)
Nature Chem. Biol
, vol.5
, pp. 559-566
-
-
Copley, S.D.1
-
22
-
-
57049091573
-
Systems biology approaches to bioremediation
-
de Lorenzo, V. Systems biology approaches to bioremediation. Curr. Opin. Biotechnol. 19, 579-589 (2008).
-
(2008)
Curr. Opin. Biotechnol
, vol.19
, pp. 579-589
-
-
De Lorenzo, V.1
-
23
-
-
78651472662
-
Mechanisms of stationary-phase mutagenesis in bacteria: Mutational processes in pseudomonads
-
Kivisaar, M. Mechanisms of stationary-phase mutagenesis in bacteria: mutational processes in pseudomonads. FEMS Microbiol. Lett. 312, 1-14 (2010).
-
(2010)
FEMS Microbiol. Lett
, vol.312
, pp. 1-14
-
-
Kivisaar, M.1
-
24
-
-
84884653783
-
Endogenous stress caused by faulty oxidation reactions fosters evolution of 2,4-dinitrotoluene-degrading bacteria
-
Pérez-Pantoja, D., Nikel, P. I., Chavarría, M. & de Lorenzo, V. Endogenous stress caused by faulty oxidation reactions fosters evolution of 2,4-dinitrotoluene-degrading bacteria. PLoS Genet. 9, e1003764 (2013).
-
(2013)
PLoS Genet
, vol.9
-
-
Pérez-Pantoja, D.1
Nikel, P.I.2
Chavarría, M.3
De Lorenzo, V.4
-
25
-
-
84875059461
-
Why are chlorinated pollutants so difficult to degrade aerobically? Redox stress limits 1,3-dichloroprop-1-ene metabolism by Pseudomonas pavonaceae
-
Nikel, P. I., Pérez-Pantoja, D. & de Lorenzo, V. Why are chlorinated pollutants so difficult to degrade aerobically? Redox stress limits 1,3-dichloroprop-1-ene metabolism by Pseudomonas pavonaceae. Phil. Trans. R. Soc. B 368, 20120377 (2013).
-
(2013)
Phil. Trans. R. Soc. B
, vol.368
, pp. 20120377
-
-
Nikel, P.I.1
Pérez-Pantoja, D.2
De Lorenzo, V.3
-
27
-
-
0040460179
-
List of bacterial names with standing in nomenclature: A folder available on the internet
-
Euzéby, J. P. List of bacterial names with standing in nomenclature: a folder available on the internet. Internatl J. Syst. Evol. Microbiol. 47, 590-592 (1997).
-
(1997)
Internatl J. Syst. Evol. Microbiol
, vol.47
, pp. 590-592
-
-
Euzéby, J.P.1
-
29
-
-
77957948829
-
The Pseudomonas story
-
Palleroni, N. J. The Pseudomonas story. Environ. Microbiol. 12, 1377-1383 (2010).
-
(2010)
Environ. Microbiol
, vol.12
, pp. 1377-1383
-
-
Palleroni, N.J.1
-
30
-
-
70449659117
-
Historical evolution and current status of the taxonomy of genus Pseudomonas
-
Peix, A., Ramírez-Bahena, M. H. & Velázquez, E. Historical evolution and current status of the taxonomy of genus Pseudomonas. Infect. Genet. Evol. 9, 1132-1147 (2009).
-
(2009)
Infect. Genet. Evol
, vol.9
, pp. 1132-1147
-
-
Peix, A.1
Ramírez-Bahena, M.H.2
Velázquez, E.3
-
31
-
-
79954882372
-
Mupirocin: Biosynthesis, special features and applications of an antibiotic from a Gram-negative bacterium
-
Gurney, R. & Thomas, C. M. Mupirocin: biosynthesis, special features and applications of an antibiotic from a Gram-negative bacterium. Appl. Microbiol. Biotechnol. 90, 11-21 (2011).
-
(2011)
Appl. Microbiol. Biotechnol
, vol.90
, pp. 11-21
-
-
Gurney, R.1
Thomas, C.M.2
-
32
-
-
84864591224
-
Comparative genomics of plant-associated Pseudomonas spp.: Insights into diversity and inheritance of traits involved in multitrophic interactions
-
Loper, J. E. et al. Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions. PLoS Genet. 8, e1002784 (2012).
-
(2012)
PLoS Genet
, vol.8
-
-
Loper, J.E.1
-
33
-
-
84871787592
-
A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence
-
Balasubramanian, D., Schneper, L., Kumari, H. & Mathee, K. A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence. Nucleic Acids Res. 41, 1-20 (2013).
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 1-20
-
-
Balasubramanian, D.1
Schneper, L.2
Kumari, H.3
Mathee, K.4
-
34
-
-
84555178426
-
Intrinsic and environmental mutagenesis drive diversification and persistence of Pseudomonas aeruginosa in chronic lung infections
-
Rodríguez-Rojas, A., Oliver, A. & Blázquez, J. Intrinsic and environmental mutagenesis drive diversification and persistence of Pseudomonas aeruginosa in chronic lung infections. J. Infect. Dis. 205, 121-127 (2012).
-
(2012)
J. Infect. Dis
, vol.205
, pp. 121-127
-
-
Rodríguez-Rojas, A.1
Oliver, A.2
Blázquez, J.3
-
35
-
-
14244256095
-
Experimental identification and quantification of glucose metabolism in seven bacterial species
-
Fuhrer, T., Fischer, E. & Sauer, U. Experimental identification and quantification of glucose metabolism in seven bacterial species. J. Bacteriol. 187, 1581-1590 (2005).
-
(2005)
J. Bacteriol
, vol.187
, pp. 1581-1590
-
-
Fuhrer, T.1
Fischer, E.2
Sauer, U.3
-
36
-
-
0028267574
-
Pseudomonas aeruginosa: Genes and enzymes of alginate synthesis
-
May, T. B. & Chakrabarty, A. M. Pseudomonas aeruginosa: genes and enzymes of alginate synthesis. Trends Microbiol. 2, 151-157 (1994).
-
(1994)
Trends Microbiol
, vol.2
, pp. 151-157
-
-
May, T.B.1
Chakrabarty, A.M.2
-
37
-
-
84893447906
-
From the selfish gene to selfish metabolism: Revisiting the central dogma
-
de Lorenzo, V. From the selfish gene to selfish metabolism: revisiting the central dogma. BioEssays. 36, 226-235 (2014).
-
(2014)
BioEssays
, vol.36
, pp. 226-235
-
-
De Lorenzo, V.1
-
38
-
-
41149163825
-
Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1
-
Oberhardt, M. A., Puchałka, J., Fryer, K. E., Martins dos Santos, V. A. P. & Papin, J. A. Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1. J. Bacteriol. 190, 2790-2803 (2008).
-
(2008)
J. Bacteriol
, vol.190
, pp. 2790-2803
-
-
Oberhardt, M.A.1
Puchałka, J.2
Fryer, K.E.3
Martins Dos Santos, V.A.P.4
Papin, J.A.5
-
39
-
-
52449130902
-
Metabolic response of Pseudomonas putida during redox biocatalysis in the presence of a second octanol phase
-
Blank, L. M., Ionidis, G., Ebert, B. E., Bühler, B. & Schmid, A. Metabolic response of Pseudomonas putida during redox biocatalysis in the presence of a second octanol phase. FEBS J. 275, 5173-5190 (2008).
-
(2008)
FEBS J
, vol.275
, pp. 5173-5190
-
-
Blank, L.M.1
Ionidis, G.2
Ebert, B.E.3
Bühler, B.4
Schmid, A.5
-
40
-
-
0345466364
-
Involvement of an active efflux system in the natural resistance of Pseudomonas aeruginosa to aminoglycosides
-
Aires, J. R., Köhler, T., Nikaido, H. & Plésiat, P. Involvement of an active efflux system in the natural resistance of Pseudomonas aeruginosa to aminoglycosides. Antimicrob. Agents Chemother. 43, 2624-2628 (1999).
-
(1999)
Antimicrob. Agents Chemother
, vol.43
, pp. 2624-2628
-
-
Aires, J.R.1
Köhler, T.2
Nikaido, H.3
Plésiat, P.4
-
41
-
-
66149134410
-
Efflux unbalance in Pseudomonas aeruginosa isolates from cystic fibrosis patients
-
Vettoretti, L. et al. Efflux unbalance in Pseudomonas aeruginosa isolates from cystic fibrosis patients. Antimicrob. Agents Chemother. 53, 1987-1997 (2009).
-
(2009)
Antimicrob. Agents Chemother
, vol.53
, pp. 1987-1997
-
-
Vettoretti, L.1
-
42
-
-
84864911444
-
Analysis of solvent tolerance in Pseudomonas putida DOT-T1E based on its genome sequence and a collection of mutants
-
Udaondo, Z. et al. Analysis of solvent tolerance in Pseudomonas putida DOT-T1E based on its genome sequence and a collection of mutants. FEBS Lett. 586, 2932-2938 (2012).
-
(2012)
FEBS Lett
, vol.586
, pp. 2932-2938
-
-
Udaondo, Z.1
-
43
-
-
0036937672
-
Pseudomonas putida: A cosmopolitan opportunist par excellence
-
Timmis, K. N. Pseudomonas putida: a cosmopolitan opportunist par excellence. Environ. Microbiol. 4, 779-781 (2002).
-
(2002)
Environ. Microbiol
, vol.4
, pp. 779-781
-
-
Timmis, K.N.1
-
44
-
-
84862292281
-
Industrial biotechnology of Pseudomonas putida and related species
-
Poblete-Castro, I., Becker, J., Dohnt, K., Martins dos Santos, V. A. P. & Wittmann, C. Industrial biotechnology of Pseudomonas putida and related species. Appl. Microbiol. Biotechnol. 93, 2279-2290 (2012).
-
(2012)
Appl. Microbiol. Biotechnol
, vol.93
, pp. 2279-2290
-
-
Poblete-Castro, I.1
Becker, J.2
Dohnt, K.3
Martins Dos Santos, V.A.P.4
Wittmann, C.5
-
45
-
-
0028685917
-
Ananda Chakrabarty wins a patent: Biotechnology, law, and society
-
Kevles, D. J. Ananda Chakrabarty wins a patent: biotechnology, law, and society. Hist. Stud. Phys. Biol. Sci. 25, 111-135 (1994).
-
(1994)
Hist. Stud. Phys. Biol. Sci
, vol.25
, pp. 111-135
-
-
Kevles, D.J.1
-
46
-
-
79251593648
-
Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida
-
Wu, X. et al. Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida. FEMS Microbiol. Rev. 35, 299-323 (2011).
-
(2011)
FEMS Microbiol. Rev
, vol.35
, pp. 299-323
-
-
Wu, X.1
-
47
-
-
79951604920
-
Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1
-
Matilla, M. A. et al. Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1. J. Bacteriol. 193, 1290 (2011).
-
(2011)
J. Bacteriol
, vol.193
, pp. 1290
-
-
Matilla, M.A.1
-
48
-
-
84874729370
-
Analysis of the plant growth-promoting properties encoded by the genome of the rhizobacterium Pseudomonas putida BIRD-1
-
Roca, A. et al. Analysis of the plant growth-promoting properties encoded by the genome of the rhizobacterium Pseudomonas putida BIRD-1. Environ. Microbiol. 15, 780-794 (2013).
-
(2013)
Environ. Microbiol
, vol.15
, pp. 780-794
-
-
Roca, A.1
-
49
-
-
79958048843
-
Pseudomonas genomes: Diverse and adaptable
-
Silby, M. W., Winstanley, C., Godfrey, S. A., Levy, S. B. & Jackson, R. W. Pseudomonas genomes: diverse and adaptable. FEMS Microbiol. Rev. 35, 652-680 (2011).
-
(2011)
FEMS Microbiol. Rev
, vol.35
, pp. 652-680
-
-
Silby, M.W.1
Winstanley, C.2
Godfrey, S.A.3
Levy, S.B.4
Jackson, R.W.5
-
50
-
-
0036933805
-
Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440
-
Jiménez, J. I., Miñambres, B., García, J. L. & Díaz, E. Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440. Environ. Microbiol. 4, 824-841 (2002).
-
(2002)
Environ. Microbiol
, vol.4
, pp. 824-841
-
-
Jiménez, J.I.1
Miñambres, B.2
García, J.L.3
Díaz, E.4
-
51
-
-
33644956913
-
Surveying biotransformations with à la carte genetic traps: Translating dehydrochlorination of lindane (γ-hexachlorocyclohexane) into lacZ-based phenotypes
-
Mohn, W. W., Garmendia, J., Galvão, T. C. & de Lorenzo, V. Surveying biotransformations with à la carte genetic traps: translating dehydrochlorination of lindane (γ-hexachlorocyclohexane) into lacZ-based phenotypes. Environ. Microbiol. 8, 546-555 (2006).
-
(2006)
Environ. Microbiol
, vol.8
, pp. 546-555
-
-
Mohn, W.W.1
Garmendia, J.2
Galvão, T.C.3
De Lorenzo, V.4
-
52
-
-
66349107635
-
Methods for unveiling cryptic microbial partnerships in nature
-
Orphan, V. J. Methods for unveiling cryptic microbial partnerships in nature. Curr. Opin. Microbiol. 12, 231-237 (2009).
-
(2009)
Curr. Opin. Microbiol
, vol.12
, pp. 231-237
-
-
Orphan, V.J.1
-
53
-
-
84862999012
-
Mass spectral molecular networking of living microbial colonies
-
Watrous, J. et al. Mass spectral molecular networking of living microbial colonies. Proc. Natl Acad. Sci. USA 109, E1743-E1752 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
-
-
Watrous, J.1
-
54
-
-
84872163712
-
Engineering of synthetic intercellular communication systems
-
Bacchus, W. & Fussenegger, M. Engineering of synthetic intercellular communication systems. Metab. Eng. 16, 33-41 (2013).
-
(2013)
Metab. Eng
, vol.16
, pp. 33-41
-
-
Bacchus, W.1
Fussenegger, M.2
-
55
-
-
16244376449
-
Whole organism biocatalysis
-
Ishige, T., Honda, K. & Shimizu, S. Whole organism biocatalysis. Curr. Opin. Chem. Biol. 9, 174-180 (2005).
-
(2005)
Curr. Opin. Chem. Biol
, vol.9
, pp. 174-180
-
-
Ishige, T.1
Honda, K.2
Shimizu, S.3
-
56
-
-
0024512944
-
Pseudomonas thrives in high concentrations of toluene
-
Inoue, A. & Horikoshi, K. A. Pseudomonas thrives in high concentrations of toluene. Nature 227, 264-265 (1989).
-
(1989)
Nature
, vol.227
, pp. 264-265
-
-
Inoue, A.1
Horikoshi, K.A.2
-
57
-
-
0029020954
-
Isolation and expansion of the catabolic potential of a Pseudomonas putida strain able to grow in the presence of high concentrations of aromatic hydrocarbons
-
Ramos, J. L., Duque, E., Huertas, M. J. & Haidour, A. Isolation and expansion of the catabolic potential of a Pseudomonas putida strain able to grow in the presence of high concentrations of aromatic hydrocarbons. J. Bacteriol. 177, 3911-3916 (1995).
-
(1995)
J. Bacteriol
, vol.177
, pp. 3911-3916
-
-
Ramos, J.L.1
Duque, E.2
Huertas, M.J.3
Haidour, A.4
-
58
-
-
0027424693
-
Adaptation of Pseudomonas putida S12 to high concentrations of styrene and other organic solvents
-
Weber, F. J., Ooijkaas, L. P., Schemen, R. M., Hartmans, S. & de Bont, J. A. Adaptation of Pseudomonas putida S12 to high concentrations of styrene and other organic solvents. Appl. Environ. Microbiol. 59, 3502-3504 (1993).
-
(1993)
Appl. Environ. Microbiol
, vol.59
, pp. 3502-3504
-
-
Weber, F.J.1
Ooijkaas, L.P.2
Schemen, R.M.3
Hartmans, S.4
De Bont, J.A.5
-
59
-
-
0036405482
-
Mechanisms of solvent tolerance in Gram-negative bacteria
-
Ramos, J. L. et al. Mechanisms of solvent tolerance in Gram-negative bacteria. Annu. Rev. Microbiol. 56, 743-768 (2002).
-
(2002)
Annu. Rev. Microbiol
, vol.56
, pp. 743-768
-
-
Ramos, J.L.1
-
60
-
-
33744951971
-
Transcriptional tradeoff between metabolic and stress-response programs in Pseudomonas putida KT2440 cells exposed to toluene
-
Domínguez-Cuevas, P., González-Pastor, J. E., Marquis, S., Ramos, J. L. & de Lorenzo, V. Transcriptional tradeoff between metabolic and stress-response programs in Pseudomonas putida KT2440 cells exposed to toluene. J. Biol. Chem. 281, 11981-11991 (2006).
-
(2006)
J. Biol. Chem
, vol.281
, pp. 11981-11991
-
-
Domínguez-Cuevas, P.1
González-Pastor, J.E.2
Marquis, S.3
Ramos, J.L.4
De Lorenzo, V.5
-
61
-
-
67649622058
-
Selected Pseudomonas putida strains able to grow in the presence of high butanol concentrations
-
Róhl, J., Schmid, A. & Blank, L. M. Selected Pseudomonas putida strains able to grow in the presence of high butanol concentrations. Appl. Environ. Microbiol. 75, 4653-4656 (2009).
-
(2009)
Appl. Environ. Microbiol
, vol.75
, pp. 4653-4656
-
-
Róhl, J.1
Schmid, A.2
Blank, L.M.3
-
62
-
-
68049135724
-
Engineering alternative butanol production platforms in heterologous bacteria
-
Nielsen, D. R. et al. Engineering alternative butanol production platforms in heterologous bacteria. Metab. Eng. 11, 262-273 (2009).
-
(2009)
Metab. Eng
, vol.11
, pp. 262-273
-
-
Nielsen, D.R.1
-
63
-
-
0038604096
-
Bioplastics from microorganisms
-
Luengo, J. M., García, B., Sandoval, A., Naharro, G. & Olivera, E. R. Bioplastics from microorganisms. Curr. Opin. Microbiol. 6, 251-260 (2003).
-
(2003)
Curr. Opin. Microbiol
, vol.6
, pp. 251-260
-
-
Luengo, J.M.1
García, B.2
Sandoval, A.3
Naharro, G.4
Olivera, E.R.5
-
64
-
-
0025226099
-
Occurrence, metabolism, metabolic role, and industrial uses of bacterial polyhydroxyalkanoates
-
Anderson, A. J. & Dawes, E. A. Occurrence, metabolism, metabolic role, and industrial uses of bacterial polyhydroxyalkanoates. Microbiol. Rev. 54, 450-472 (1990).
-
(1990)
Microbiol. Rev
, vol.54
, pp. 450-472
-
-
Anderson, A.J.1
Dawes, E.A.2
-
65
-
-
77952955154
-
Polyhydroxyalkanoates: Bioplastics with a green agenda
-
Keshavarz, T. & Roy, I. Polyhydroxyalkanoates: bioplastics with a green agenda. Curr. Opin. Microbiol. 13, 321-326 (2010).
-
(2010)
Curr. Opin. Microbiol
, vol.13
, pp. 321-326
-
-
Keshavarz, T.1
Roy, I.2
-
66
-
-
33745133376
-
New recombinant Escherichia coli strain tailored for the production of poly(3-hydroxybutyrate) from agroindustrial by-products
-
Nikel, P. I., de Almeida, A., Melillo, E. C., Galvagno, M. A. & Pettinari, M. J. New recombinant Escherichia coli strain tailored for the production of poly(3-hydroxybutyrate) from agroindustrial by-products. Appl. Environ. Microbiol. 72, 3949-3954 (2006).
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 3949-3954
-
-
Nikel, P.I.1
De Almeida, A.2
Melillo, E.C.3
Galvagno, M.A.4
Pettinari, M.J.5
-
67
-
-
82755198036
-
Polyhydroxyalkanoates as a source of chemicals, polymers, and biofuels
-
Gao, X., Chen, J. C., Wu, Q. & Chen, G. Q. Polyhydroxyalkanoates as a source of chemicals, polymers, and biofuels. Curr. Opin. Biotechnol. 22, 768-774 (2011).
-
(2011)
Curr. Opin. Biotechnol
, vol.22
, pp. 768-774
-
-
Gao, X.1
Chen, J.C.2
Wu, Q.3
Chen, G.Q.4
-
68
-
-
34248138086
-
Biosynthesis, modification, and biodegradation of bacterial medium-chain-length polyhydroxyalkanoates
-
Kim, Y., Kim, H. W., Chung, M. G. & Rhee, Y. H. Biosynthesis, modification, and biodegradation of bacterial medium-chain-length polyhydroxyalkanoates. J. Microbiol. 45, 87-97 (2007).
-
(2007)
J. Microbiol
, vol.45
, pp. 87-97
-
-
Kim, Y.1
Kim, H.W.2
Chung, M.G.3
Rhee, Y.H.4
-
69
-
-
84882285580
-
Tight coupling of polymerization and depolymerization of polyhydroxyalkanoates ensures efficient management of carbon resources in Pseudomonas putida
-
Arias, S., Bassas-Galia, M., Molinari, G. & Timmis, K. N. Tight coupling of polymerization and depolymerization of polyhydroxyalkanoates ensures efficient management of carbon resources in Pseudomonas putida. Microb. Biotechnol. 6, 551-563 (2013).
-
(2013)
Microb. Biotechnol
, vol.6
, pp. 551-563
-
-
Arias, S.1
Bassas-Galia, M.2
Molinari, G.3
Timmis, K.N.4
-
70
-
-
84878848014
-
Pseudomonas putida KT2442 as a platform for the biosynthesis of polyhydroxyalkanoates with adjustable monomer contents and compositions
-
Tripathi, L. et al. Pseudomonas putida KT2442 as a platform for the biosynthesis of polyhydroxyalkanoates with adjustable monomer contents and compositions. Bioresour. Technol. 142, 225-231 (2013).
-
(2013)
Bioresour. Technol
, vol.142
, pp. 225-231
-
-
Tripathi, L.1
-
71
-
-
79952573394
-
Disruption of β-oxidation pathway in Pseudomonas putida KT2442 to produce new functionalized PHAs with thioester groups
-
Escapa, I. F. et al. Disruption of β-oxidation pathway in Pseudomonas putida KT2442 to produce new functionalized PHAs with thioester groups. Appl. Microbiol. Biotechnol. 89, 1583-1598 (2011).
-
(2011)
Appl. Microbiol. Biotechnol
, vol.89
, pp. 1583-1598
-
-
Escapa, I.F.1
-
72
-
-
0036937473
-
Pedigree and taxonomic credentials of Pseudomonas putida strain KT2440
-
Regenhardt, D. et al. Pedigree and taxonomic credentials of Pseudomonas putida strain KT2440. Environ. Microbiol. 4, 912-915 (2002).
-
(2002)
Environ. Microbiol
, vol.4
, pp. 912-915
-
-
Regenhardt, D.1
-
73
-
-
0036933237
-
Travels of a Pseudomonas, from Japan around the world
-
Nakazawa, T. Travels of a Pseudomonas, from Japan around the world. Environ. Microbiol. 4, 782-786 (2002).
-
(2002)
Environ. Microbiol
, vol.4
, pp. 782-786
-
-
Nakazawa, T.1
-
74
-
-
0014605052
-
Regulation of the meta cleavage pathway for benzoate oxidation by Pseudomonas putida
-
Feist, C. F. & Hegeman, G. D. Regulation of the meta cleavage pathway for benzoate oxidation by Pseudomonas putida. J. Bacteriol. 100, 1121-1123 (1969).
-
(1969)
J. Bacteriol
, vol.100
, pp. 1121-1123
-
-
Feist, C.F.1
Hegeman, G.D.2
-
75
-
-
0016197816
-
Metabolism of benzoate and the methylbenzoates by Pseudomonas putida (arvilla) mt-2: Evidence for the existence of a TOL plasmid
-
Williams, P. A. & Murray, K. Metabolism of benzoate and the methylbenzoates by Pseudomonas putida (arvilla) mt-2: evidence for the existence of a TOL plasmid. J. Bacteriol. 120, 416-423 (1974).
-
(1974)
J. Bacteriol
, vol.120
, pp. 416-423
-
-
Williams, P.A.1
Murray, K.2
-
77
-
-
0036933705
-
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440
-
Nelson, K. E. et al. Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ. Microbiol. 4, 799-808 (2002).
-
(2002)
Environ. Microbiol
, vol.4
, pp. 799-808
-
-
Nelson, K.E.1
-
78
-
-
10044292705
-
Insights into the genomic basis of niche specificity of Pseudomonas putida KT2440
-
Martins dos Santos, V. A. P., Heim, S., Moore, E. R., Strätz, M. & Timmis, K. N. Insights into the genomic basis of niche specificity of Pseudomonas putida KT2440. Environ. Microbiol. 6, 1264-1286 (2004).
-
(2004)
Environ. Microbiol
, vol.6
, pp. 1264-1286
-
-
Martins Dos Santos, V.A.P.1
Heim, S.2
Moore, E.R.3
Strätz, M.4
Timmis, K.N.5
-
79
-
-
84878639396
-
The Entner-Doudoroff pathway empowers Pseudomonas putida KT2440 with a high tolerance to oxidative stress
-
Chavarría, M., Nikel, P. I., Pirez-Pantoja, D. & de Lorenzo, V. The Entner-Doudoroff pathway empowers Pseudomonas putida KT2440 with a high tolerance to oxidative stress. Environ. Microbiol. 15, 1772-1785 (2013).
-
(2013)
Environ. Microbiol
, vol.15
, pp. 1772-1785
-
-
Chavarría, M.1
Nikel, P.I.2
Pirez-Pantoja, D.3
De Lorenzo, V.4
-
80
-
-
80052787409
-
Response of Pseudomonas putida KT2440 to increased NADH and ATP demand
-
Ebert, B. E., Kurth, F., Grund, M., Blank, L. M. & Schmid, A. Response of Pseudomonas putida KT2440 to increased NADH and ATP demand. Appl. Environ. Microbiol. 77, 6597-6605 (2011).
-
(2011)
Appl. Environ. Microbiol
, vol.77
, pp. 6597-6605
-
-
Ebert, B.E.1
Kurth, F.2
Grund, M.3
Blank, L.M.4
Schmid, A.5
-
81
-
-
54449092307
-
A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: IJN746 as a cell factory
-
Nogales, J., Palsson, B. Ø. & Thiele, I. A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory. BMC Syst. Biol. 2, 79 (2008).
-
(2008)
BMC Syst. Biol
, vol.2
, pp. 79
-
-
Nogales, J.1
Palsson B.Ø2
Thiele, I.3
-
82
-
-
55449096123
-
Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology
-
Puchałka, J. et al. Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology. PLoS Comput. Biol. 4, e1000210 (2008).
-
(2008)
PLoS Comput. Biol
, vol.4
-
-
Puchałka, J.1
-
83
-
-
77954714441
-
In silico genome-scale metabolic analysis of Pseudomonas putida KT2440 for polyhydroxyalkanoate synthesis, degradation of aromatics and anaerobic survival
-
Sohn, S. B., Kim, T. Y., Park, J. M. & Lee, S. Y. In silico genome-scale metabolic analysis of Pseudomonas putida KT2440 for polyhydroxyalkanoate synthesis, degradation of aromatics and anaerobic survival. Biotechnol. J. 5, 739-750 (2010).
-
(2010)
Biotechnol. J
, vol.5
, pp. 739-750
-
-
Sohn, S.B.1
Kim, T.Y.2
Park, J.M.3
Lee, S.Y.4
-
84
-
-
84886422324
-
Reconciling in vivo and in silico key biological parameters of Pseudomonas putida KT2440 during growth on glucose under carbon-limited condition
-
van Duuren, J. B. et al. Reconciling in vivo and in silico key biological parameters of Pseudomonas putida KT2440 during growth on glucose under carbon-limited condition. BMC Biotechnol. 13, 93 (2013).
-
(2013)
BMC Biotechnol
, vol.13
, pp. 93
-
-
Van Duuren, J.B.1
-
85
-
-
84891635026
-
Metabolic and regulatory rearrangements underlying glycerol metabolism in Pseudomonas putida KT2440
-
Nikel, P. I., Kim, J. & de Lorenzo, V. Metabolic and regulatory rearrangements underlying glycerol metabolism in Pseudomonas putida KT2440. Environ. Microbiol. 16, 239-254 (2014).
-
(2014)
Environ. Microbiol
, vol.16
, pp. 239-254
-
-
Nikel, P.I.1
Kim, J.2
De Lorenzo, V.3
-
86
-
-
84887648944
-
Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes
-
Kim, J., Oliveros, J. C., Nikel, P. I., de Lorenzo, V. & Silva-Rocha, R. Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes. Environ. Microbiol. Rep. 5, 883-891 (2013).
-
(2013)
Environ. Microbiol. Rep
, vol.5
, pp. 883-891
-
-
Kim, J.1
Oliveros, J.C.2
Nikel, P.I.3
De Lorenzo, V.4
Silva-Rocha, R.5
-
87
-
-
71549122280
-
PutidaNET: Interactome database service and network analysis of Pseudomonas putida KT2440
-
Park, S. J. et al. PutidaNET: interactome database service and network analysis of Pseudomonas putida KT2440. BMC Genomics 10, S18 (2009).
-
(2009)
BMC Genomics
, vol.10
-
-
Park, S.J.1
-
88
-
-
78651267246
-
Pseudomonas Genome Database: Improved comparative analysis and population genomics capability for Pseudomonas genomes
-
Winsor, G. L. et al. Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes. Nucleic Acids Res. 39, D596-D600 (2011).
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Winsor, G.L.1
-
89
-
-
0035476701
-
Vectors to express foreign genes and techniques to monitor gene expression in Pseudomonads
-
Schweizer, H. P. Vectors to express foreign genes and techniques to monitor gene expression in Pseudomonads. Curr. Opin. Biotechnol. 12, 439-445 (2001).
-
(2001)
Curr. Opin. Biotechnol
, vol.12
, pp. 439-445
-
-
Schweizer, H.P.1
-
90
-
-
84865515927
-
Homologous recombination is facilitated in starving populations of Pseudomonas putida by phenol stress and affected by chromosomal location of the recombination target
-
Tavita, K. et al. Homologous recombination is facilitated in starving populations of Pseudomonas putida by phenol stress and affected by chromosomal location of the recombination target. Mutat. Res. 737, 12-24 (2012).
-
(2012)
Mutat. Res
, vol.737
, pp. 12-24
-
-
Tavita, K.1
-
91
-
-
0036228521
-
Engineering a reduced Escherichia coli genome
-
Kolisnychenko, V. et al. Engineering a reduced Escherichia coli genome. Genome Res. 12, 640-647 (2002).
-
(2002)
Genome Res
, vol.12
, pp. 640-647
-
-
Kolisnychenko, V.1
-
92
-
-
80053648189
-
Engineering multiple genomic deletions in Gram-negative bacteria: Analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440
-
Martínez-García, E. & de Lorenzo, V. Engineering multiple genomic deletions in Gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440. Environ. Microbiol. 13, 2702-2716 (2011).
-
(2011)
Environ. Microbiol
, vol.13
, pp. 2702-2716
-
-
Martínez-García, E.1
De Lorenzo, V.2
-
93
-
-
82355181976
-
Transposon-based and plasmid-based genetic tools for editing genomes of Gram-negative bacteria
-
Martínez-García, E. & de Lorenzo, V. Transposon-based and plasmid-based genetic tools for editing genomes of Gram-negative bacteria. Methods Mol. Biol. 813, 267-283 (2012).
-
(2012)
Methods Mol. Biol
, vol.813
, pp. 267-283
-
-
Martínez-García, E.1
De Lorenzo, V.2
-
94
-
-
84891631101
-
The metabolic cost of flagellar motion in Pseudomonas putida KT2440
-
Martínez-García, E., Nikel, P. I., Chavarría, M. & de Lorenzo, V. The metabolic cost of flagellar motion in Pseudomonas putida KT2440. Environ. Microbiol. 16, 291-303 (2014).
-
(2014)
Environ. Microbiol
, vol.16
, pp. 291-303
-
-
Martínez-García, E.1
Nikel, P.I.2
Chavarría, M.3
De Lorenzo, V.4
-
95
-
-
84861943059
-
Random and cyclical deletion of large DNA segments in the genome of Pseudomonas putida
-
LePrince, A., de Lorenzo, V., Voller, P., van Passel, M. W. & Martins dos Santos, V. A. P. Random and cyclical deletion of large DNA segments in the genome of Pseudomonas putida. Environ. Microbiol. 14, 1444-1453 (2012).
-
(2012)
Environ. Microbiol
, vol.14
, pp. 1444-1453
-
-
Leprince, A.1
De Lorenzo, V.2
Voller, P.3
Van Passel, M.W.4
Martins Dos Santos, V.A.P.5
-
96
-
-
0019805971
-
Specific purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas
-
Bagdasarian, M. et al. Specific purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas. Gene 16, 237-247 (1981).
-
(1981)
Gene
, vol.16
, pp. 237-247
-
-
Bagdasarian, M.1
-
97
-
-
84871436225
-
Engineering an anaerobic metabolic regime in Pseudomonas putida KT2440 for the anoxic biodegradation of 1,3-dichloroprop-1-ene
-
Nikel, P. I. & de Lorenzo, V. Engineering an anaerobic metabolic regime in Pseudomonas putida KT2440 for the anoxic biodegradation of 1,3-dichloroprop-1-ene. Metab. Eng. 15, 98-112 (2013).
-
(2013)
Metab. Eng
, vol.15
, pp. 98-112
-
-
Nikel, P.I.1
De Lorenzo, V.2
-
98
-
-
0028358260
-
Analysis and construction of stable phenotypes in Gram-negative bacteria with Tn5- and Tn10-derived minitransposons
-
de Lorenzo, V. & Timmis, K. N. Analysis and construction of stable phenotypes in Gram-negative bacteria with Tn5- and Tn10-derived minitransposons. Methods Enzymol. 235, 386-405 (1994).
-
(1994)
Methods Enzymol
, vol.235
, pp. 386-405
-
-
De Lorenzo, V.1
Timmis, K.N.2
-
99
-
-
79951794467
-
PBAM1: An all-synthetic genetic tool for analysis and construction of complex bacterial phenotypes
-
Martínez-García, E., Calles, B., Arivalo-Rodríguez, M. & de Lorenzo, V. pBAM1: an all-synthetic genetic tool for analysis and construction of complex bacterial phenotypes. BMC Microbiol. 11, 38 (2011).
-
(2011)
BMC Microbiol
, vol.11
, pp. 38
-
-
Martínez-García, E.1
Calles, B.2
Arivalo-Rodríguez, M.3
De Lorenzo, V.4
-
100
-
-
84872193848
-
Implantation of unmarked regulatory and metabolic modules in Gram-negative bacteria with specialised mini-transposon delivery vectors
-
Nikel, P. I. & de Lorenzo, V. Implantation of unmarked regulatory and metabolic modules in Gram-negative bacteria with specialised mini-transposon delivery vectors. J. Biotechnol. 163, 143-154 (2013).
-
(2013)
J. Biotechnol
, vol.163
, pp. 143-154
-
-
Nikel, P.I.1
De Lorenzo, V.2
-
101
-
-
67651102745
-
Protein occupancy landscape of a bacterial genome
-
Vora, T., Hottes, A. K. & Tavazoie, S. Protein occupancy landscape of a bacterial genome. Mol. Cell 35, 247-253 (2009).
-
(2009)
Mol. Cell
, vol.35
, pp. 247-253
-
-
Vora, T.1
Hottes, A.K.2
Tavazoie, S.3
-
102
-
-
0030814122
-
Modulation of gene expression through chromosomal positioning in Escherichia coli
-
Sousa, C., de Lorenzo, V. & Cebolla, A. Modulation of gene expression through chromosomal positioning in Escherichia coli. Microbiology 143, 2071-2078 (1997).
-
(1997)
Microbiology
, vol.143
, pp. 2071-2078
-
-
Sousa, C.1
De Lorenzo, V.2
Cebolla, A.3
-
103
-
-
33749531431
-
Mini-Tn7 insertion in bacteria with single attTn7 sites: Example Pseudomonas aeruginosa
-
Choi, K. H. & Schweizer, H. P. Mini-Tn7 insertion in bacteria with single attTn7 sites: example Pseudomonas aeruginosa. Nature Protocols 1, 153-161 (2006).
-
(2006)
Nature Protocols
, vol.1
, pp. 153-161
-
-
Choi, K.H.1
Schweizer, H.P.2
-
104
-
-
3042786311
-
Mini-Tn7 transposons for site-specific tagging of bacteria with fluorescent proteins
-
Lambertsen, L., Sternberg, C. & Molin, S. Mini-Tn7 transposons for site-specific tagging of bacteria with fluorescent proteins. Environ. Microbiol. 6, 726-732 (2004).
-
(2004)
Environ. Microbiol
, vol.6
, pp. 726-732
-
-
Lambertsen, L.1
Sternberg, C.2
Molin, S.3
-
105
-
-
55849108542
-
Stable implantation of orthogonal sensor circuits in Gram-negative bacteria for environmental release
-
de las Heras, A., Carreño, C. A. & de Lorenzo, V. Stable implantation of orthogonal sensor circuits in Gram-negative bacteria for environmental release. Environ. Microbiol. 10, 3305-3316 (2008).
-
(2008)
Environ. Microbiol
, vol.10
, pp. 3305-3316
-
-
De Las Heras, A.1
Carreño, C.A.2
De Lorenzo, V.3
-
106
-
-
84879820222
-
A new large-DNA-fragment delivery system based on integrase activity from an integrative and conjugative element
-
Miyazaki, R. & van der Meer, J. R. A new large-DNA-fragment delivery system based on integrase activity from an integrative and conjugative element. Appl. Environ. Microbiol. 79, 4440-4447 (2013).
-
(2013)
Appl. Environ. Microbiol
, vol.79
, pp. 4440-4447
-
-
Miyazaki, R.1
Van Der Meer, J.R.2
-
107
-
-
13444302680
-
Promoters in the environment: Transcriptional regulation in its natural context
-
Cases, I. & de Lorenzo, V. Promoters in the environment: transcriptional regulation in its natural context. Nature Rev. Microbiol. 3, 105-118 (2005).
-
(2005)
Nature Rev. Microbiol
, vol.3
, pp. 105-118
-
-
Cases, I.1
De Lorenzo, V.2
-
108
-
-
0030942268
-
Construction and use of a versatile set of broad-host-range cloning and expression vectors based on the RK2 replicon
-
Blatny, J. M., Brautaset, T., Winther-Larsen, H. C., Haugan, K. & Valla, S. Construction and use of a versatile set of broad-host-range cloning and expression vectors based on the RK2 replicon. Appl. Environ. Microbiol. 63, 370-379 (1997).
-
(1997)
Appl. Environ. Microbiol
, vol.63
, pp. 370-379
-
-
Blatny, J.M.1
Brautaset, T.2
Winther-Larsen, H.C.3
Haugan, K.4
Valla, S.5
-
109
-
-
0027171096
-
Engineering of alkyl- and haloaromatic-responsive gene expression with mini-transposons containing regulated promoters of biodegradative pathways of Pseudomonas
-
de Lorenzo, V., Fernández, S., Herrero, M., Jakubzik, U. & Timmis, K. N. Engineering of alkyl- and haloaromatic-responsive gene expression with mini-transposons containing regulated promoters of biodegradative pathways of Pseudomonas. Gene 130, 41-46 (1993).
-
(1993)
Gene
, vol.130
, pp. 41-46
-
-
De Lorenzo, V.1
Fernández, S.2
Herrero, M.3
Jakubzik, U.4
Timmis, K.N.5
-
110
-
-
0032728414
-
Engineering of a stable whole-cell biocatalyst capable of (S)-styrene oxide formation for continuous two-liquid-phase applications
-
Panke, S., de Lorenzo, V., Kaiser, A., Witholt, B. & Wubbolts, M. G. Engineering of a stable whole-cell biocatalyst capable of (S)-styrene oxide formation for continuous two-liquid-phase applications. Appl. Environ. Microbiol. 65, 5619-5623 (1999).
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 5619-5623
-
-
Panke, S.1
De Lorenzo, V.2
Kaiser, A.3
Witholt, B.4
Wubbolts, M.G.5
-
111
-
-
81055148316
-
The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene
-
Silva-Rocha, R., de Jong, H., Tamames, J. & de Lorenzo, V. The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene. BMC Syst. Biol. 5, 191 (2011).
-
(2011)
BMC Syst. Biol
, vol.5
, pp. 191
-
-
Silva-Rocha, R.1
De Jong, H.2
Tamames, J.3
De Lorenzo, V.4
-
112
-
-
84887994670
-
Towards functional orthogonalization of protein complexes: Individualization of GroEL monomers leads to distinct quasi-homogeneous single rings
-
Billerbeck, S., Calles, B., Móller, C. L., de Lorenzo, V. & Panke, S. Towards functional orthogonalization of protein complexes: individualization of GroEL monomers leads to distinct quasi-homogeneous single rings. ChemBiochem 14, 2310-2321 (2013).
-
(2013)
ChemBiochem
, vol.14
, pp. 2310-2321
-
-
Billerbeck, S.1
Calles, B.2
Móller, C.L.3
De Lorenzo, V.4
Panke, S.5
-
113
-
-
84886567920
-
Expanding the Boolean logic of the prokaryotic transcription factor XylR by functionalization of permissive sites with a protease-target sequence
-
Calles, B. & de Lorenzo, V. Expanding the Boolean logic of the prokaryotic transcription factor XylR by functionalization of permissive sites with a protease-target sequence. ACS Synth. Biol. 2, 594-603 (2013).
-
(2013)
ACS Synth. Biol
, vol.2
, pp. 594-603
-
-
Calles, B.1
De Lorenzo, V.2
-
114
-
-
84874980587
-
Functioning of a metabolic flux sensor in Escherichia coli
-
Kochanowski, K. et al. Functioning of a metabolic flux sensor in Escherichia coli. Proc. Natl Acad. Sci. USA 110, 1130-1135 (2013).
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 1130-1135
-
-
Kochanowski, K.1
-
115
-
-
53149116351
-
Tracing explosives in soil with transcriptional regulators of Pseudomonas putida evolved for responding to nitrotoluenes
-
Garmendia, J., de las Heras, A., Galvão, T. C. & de Lorenzo, V. Tracing explosives in soil with transcriptional regulators of Pseudomonas putida evolved for responding to nitrotoluenes. Microb. Biotechnol. 1, 236-246 (2008).
-
(2008)
Microb. Biotechnol
, vol.1
, pp. 236-246
-
-
Garmendia, J.1
De Las Heras, A.2
Galvão, T.C.3
De Lorenzo, V.4
-
116
-
-
84883555849
-
Quantitative monitoring of 2-oxoglutarate in Escherichia coli cells by a fluorescence resonance energy transfer-based biosensor
-
Zhang, C., Wei, Z. H. & Ye, B. C. Quantitative monitoring of 2-oxoglutarate in Escherichia coli cells by a fluorescence resonance energy transfer-based biosensor. Appl. Microbiol. Biotechnol. 97, 8307-8316 (2013).
-
(2013)
Appl. Microbiol. Biotechnol
, vol.97
, pp. 8307-8316
-
-
Zhang, C.1
Wei, Z.H.2
Ye, B.C.3
-
117
-
-
77955138108
-
Engineering input/output nodes in prokaryotic regulatory circuits
-
de las Heras, A., Carreño, C. A., Martínez-García, E. & de Lorenzo, V. Engineering input/output nodes in prokaryotic regulatory circuits. FEMS Microbiol. Rev. 34, 842-865 (2010).
-
(2010)
FEMS Microbiol. Rev
, vol.34
, pp. 842-865
-
-
De Las Heras, A.1
Carreño, C.A.2
Martínez-García, E.3
De Lorenzo, V.4
-
118
-
-
17844374314
-
A synthetic multicellular system for programmed pattern formation
-
Basu, S., Gerchman, Y., Collins, C. H., Arnold, F. H. & Weiss, R. A synthetic multicellular system for programmed pattern formation. Nature 434, 1130-1134 (2005).
-
(2005)
Nature
, vol.434
, pp. 1130-1134
-
-
Basu, S.1
Gerchman, Y.2
Collins, C.H.3
Arnold, F.H.4
Weiss, R.5
-
119
-
-
84896735601
-
Engineering multicellular logic in bacteria with metabolic wires
-
Silva-Rocha, R. & de Lorenzo, V. Engineering multicellular logic in bacteria with metabolic wires. ACS Synth. Biol. http://dx.doi.org/10.1021/ sb400064y (2014).
-
(2014)
ACS Synth. Biol
-
-
Silva-Rocha, R.1
De Lorenzo, V.2
-
120
-
-
84871713783
-
Engineered catalytic biofilms for continuous large scale production of n-octanol and (S)-styrene oxide
-
Gross, R., Buehler, K. & Schmid, A. Engineered catalytic biofilms for continuous large scale production of n-octanol and (S)-styrene oxide. Biotechnol. Bioeng. 110, 424-436 (2013).
-
(2013)
Biotechnol. Bioeng
, vol.110
, pp. 424-436
-
-
Gross, R.1
Buehler, K.2
Schmid, A.3
-
121
-
-
33646722147
-
Emergent properties of reduced-genome Escherichia coli
-
Pósfai, G. et al. Emergent properties of reduced-genome Escherichia coli. Science 312, 1044-1046 (2006).
-
(2006)
Science
, vol.312
, pp. 1044-1046
-
-
Pósfai, G.1
-
122
-
-
84865283376
-
DNA synthesis, assembly and applications in synthetic biology
-
Ma, S., Tang, N. & Tian, J. DNA synthesis, assembly and applications in synthetic biology. Curr. Opin. Chem. Biol. 16, 260-267 (2012).
-
(2012)
Curr. Opin. Chem. Biol
, vol.16
, pp. 260-267
-
-
Ma, S.1
Tang, N.2
Tian, J.3
-
123
-
-
33845458438
-
Structural design in the work of Gaudí
-
Huerta, S. Structural design in the work of Gaudí. Archit. Sci. Rev. 49, 324-339 (2006).
-
(2006)
Archit. Sci. Rev
, vol.49
, pp. 324-339
-
-
Huerta, S.1
-
124
-
-
84869127261
-
Programmable in vivo selection of arbitrary DNA sequences
-
Ben Yehezkel, T., Biezuner, T., Linshiz, G., Mazor, Y. & Shapiro, E. Programmable in vivo selection of arbitrary DNA sequences. PLoS ONE 7, e47795 (2012).
-
(2012)
PLoS ONE
, vol.7
-
-
Ben Yehezkel, T.1
Biezuner, T.2
Linshiz, G.3
Mazor, Y.4
Shapiro, E.5
-
125
-
-
0034685940
-
High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection
-
Oliver, A., Cantón, R., Campo, P., Baquero, F. & Blázquez, J. High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection. Science 288, 1251-1254 (2000).
-
(2000)
Science
, vol.288
, pp. 1251-1254
-
-
Oliver, A.1
Cantón, R.2
Campo, P.3
Baquero, F.4
Blázquez, J.5
-
126
-
-
0037457901
-
Reductive genome evolution in Buchnera aphidicola
-
van Ham, R. C. et al. Reductive genome evolution in Buchnera aphidicola. Proc. Natl Acad. Sci. USA 100, 581-586 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 581-586
-
-
Van Ham, R.C.1
-
127
-
-
84886022252
-
Programming adaptive control to evolve increased metabolite production
-
Chou, H. H. & Keasling, J. D. Programming adaptive control to evolve increased metabolite production. Nature Comm. 4, 2595 (2013).
-
(2013)
Nature Comm
, vol.4
, pp. 2595
-
-
Chou, H.H.1
Keasling, J.D.2
-
128
-
-
45149118469
-
Engineering BioBrick vectors from BioBrick parts
-
Shetty, R. P., Endy, D. & Knight, T. F. Engineering BioBrick vectors from BioBrick parts. J. Biol. Eng. 2, 5 (2008).
-
(2008)
J. Biol. Eng
, vol.2
, pp. 5
-
-
Shetty, R.P.1
Endy, D.2
Knight, T.F.3
-
129
-
-
77649305316
-
BglBricks: A flexible standard for biological part assembly
-
Anderson, J. C. et al. BglBricks: a flexible standard for biological part assembly. J. Biol. Eng. 4, 1 (2010).
-
(2010)
J. Biol. Eng
, vol.4
, pp. 1
-
-
Anderson, J.C.1
-
130
-
-
84876567509
-
The Standard European Vector Architecture (SEVA): A coherent platform for the analysis and deployment of complex prokaryotic phenotypes
-
Silva-Rocha, R. et al. The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes. Nucleic Acids Res. 41, D666-D675 (2013).
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Silva-Rocha, R.1
-
131
-
-
33747078696
-
Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes
-
Pfleger, B. F., Pitera, D. J., Smolke, C. D. & Keasling, J. D. Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes. Nature Biotech. 24, 1027-1032 (2006).
-
(2006)
Nature Biotech
, vol.24
, pp. 1027-1032
-
-
Pfleger, B.F.1
Pitera, D.J.2
Smolke, C.D.3
Keasling, J.D.4
-
132
-
-
43049136820
-
Combinatorial engineering of microbes for optimizing cellular phenotype
-
Santos, C. N. S. & Stephanopoulos, G. Combinatorial engineering of microbes for optimizing cellular phenotype. Curr. Opin. Chem. Biol. 12, 168-176 (2008).
-
(2008)
Curr. Opin. Chem. Biol
, vol.12
, pp. 168-176
-
-
Santos, C.N.S.1
Stephanopoulos, G.2
-
133
-
-
68949161807
-
Programming cells by multiplex genome engineering and accelerated evolution
-
Wang, H. H. et al. Programming cells by multiplex genome engineering and accelerated evolution. Nature 460, 894-898 (2009).
-
(2009)
Nature
, vol.460
, pp. 894-898
-
-
Wang, H.H.1
-
134
-
-
67650391695
-
Synthetic biology: Exploring and exploiting genetic modularity through the design of novel biological networks
-
Agapakis, C. M. & Silver, P. A. Synthetic biology: exploring and exploiting genetic modularity through the design of novel biological networks. Mol. BioSyst. 5, 704-713 (2009).
-
(2009)
Mol. BioSyst
, vol.5
, pp. 704-713
-
-
Agapakis, C.M.1
Silver, P.A.2
-
135
-
-
84882676796
-
Retroactivity controls the temporal dynamics of gene transcription
-
Jayanthi, S., Nilgiriwala, K. S. & Del Vecchio, D. Retroactivity controls the temporal dynamics of gene transcription. ACS Synth. Biol. 2, 431-441 (2013).
-
(2013)
ACS Synth. Biol
, vol.2
, pp. 431-441
-
-
Jayanthi, S.1
Nilgiriwala, K.S.2
Del Vecchio, D.3
-
136
-
-
84860532358
-
Regulatory tasks of the phosphoenolpyruvate-phosphotransferase system of Pseudomonas putida in central carbon metabolism
-
Chavarría, M., Kleijn, R. J., Sauer, U., Pflüger-Grau, K. & de Lorenzo, V. Regulatory tasks of the phosphoenolpyruvate- phosphotransferase system of Pseudomonas putida in central carbon metabolism. mBio 3, e00028-12 (2012).
-
(2012)
MBio
, vol.3
-
-
Chavarría, M.1
Kleijn, R.J.2
Sauer, U.3
Pflüger-Grau, K.4
De Lorenzo, V.5
|