-
1
-
-
0029981197
-
Alternative conformations of amyloidogenic proteins govern their behavior
-
Kelly, J. W. (1996) Alternative conformations of amyloidogenic proteins govern their behavior Curr. Opin. Struct. Biol. 6, 11-17
-
(1996)
Curr. Opin. Struct. Biol.
, vol.6
, pp. 11-17
-
-
Kelly, J.W.1
-
2
-
-
0347357617
-
Protein folding and misfolding
-
Dobson, C. M. (2003) Protein folding and misfolding Nature 426, 884-890
-
(2003)
Nature
, vol.426
, pp. 884-890
-
-
Dobson, C.M.1
-
3
-
-
0347987853
-
Folding proteins in fatal ways
-
Selkoe, D. J. (2003) Folding proteins in fatal ways Nature 426, 900-904
-
(2003)
Nature
, vol.426
, pp. 900-904
-
-
Selkoe, D.J.1
-
4
-
-
0029891313
-
De novo design and structural analysis of a model β-hairpin peptide system
-
RamirezAlvarado, M., Blanco, F. J., and Serrano, L. (1996) De novo design and structural analysis of a model β-hairpin peptide system Nat. Struct. Biol. 3, 604-612
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 604-612
-
-
Ramirezalvarado, M.1
Blanco, F.J.2
Serrano, L.3
-
5
-
-
0037022563
-
Natural β-sheet proteins use negative design to avoid edge-to-edge aggregation
-
Richardson, J. S. and Richardson, D. C. (2002) Natural β-sheet proteins use negative design to avoid edge-to-edge aggregation Proc. Natl. Acad. Sci. U.S.A. 99, 2754-2759
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 2754-2759
-
-
Richardson, J.S.1
Richardson, D.C.2
-
6
-
-
0037022661
-
Rationally designed mutations convert de novo amyloid-like fibrils into monomeric β-sheet proteins
-
Wang, W. and Hecht, M. H. (2002) Rationally designed mutations convert de novo amyloid-like fibrils into monomeric β-sheet proteins Proc. Natl. Acad. Sci. U.S.A. 99, 2760-2765
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 2760-2765
-
-
Wang, W.1
Hecht, M.H.2
-
7
-
-
3042577367
-
De novo proteins from designed combinatorial libraries
-
Hecht, M. H., Das, A., Go, A., Bradley, L. H., and Wei, Y. N. (2004) De novo proteins from designed combinatorial libraries Protein Sci. 13, 1711-1723
-
(2004)
Protein Sci.
, vol.13
, pp. 1711-1723
-
-
Hecht, M.H.1
Das, A.2
Go, A.3
Bradley, L.H.4
Wei, Y.N.5
-
8
-
-
2442553006
-
Short amino acid stretches can mediate amyloid formation in globular proteins: The Src homology 3 (SH3) case
-
Ventura, S., Zurdo, J., Narayanan, S., Parreño, M., Mangues, R., Reif, B., Chiti, F., Giannoni, E., Dobson, C. M., Aviles, F. X., and Serrano, L. (2004) Short amino acid stretches can mediate amyloid formation in globular proteins: The Src homology 3 (SH3) case Proc. Natl. Acad. Sci. U.S.A. 101, 7258-7263
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 7258-7263
-
-
Ventura, S.1
Zurdo, J.2
Narayanan, S.3
Parreño, M.4
Mangues, R.5
Reif, B.6
Chiti, F.7
Giannoni, E.8
Dobson, C.M.9
Aviles, F.X.10
Serrano, L.11
-
9
-
-
14144256681
-
Energy functions for protein design: Adjustment with protein-protein complex affinities, models for the unfolded state, and negative design of solubility and specificity
-
Pokala, N. and Handel, T. M. (2005) Energy functions for protein design: Adjustment with protein-protein complex affinities, models for the unfolded state, and negative design of solubility and specificity J. Mol. Biol. 347, 203-227
-
(2005)
J. Mol. Biol.
, vol.347
, pp. 203-227
-
-
Pokala, N.1
Handel, T.M.2
-
10
-
-
34547631623
-
Prevention of amyloid-like aggregation as a driving force of protein evolution
-
Monsellier, E. and Chiti, F. (2007) Prevention of amyloid-like aggregation as a driving force of protein evolution EMBO Rep. 8, 737-742
-
(2007)
EMBO Rep.
, vol.8
, pp. 737-742
-
-
Monsellier, E.1
Chiti, F.2
-
12
-
-
0024707204
-
Unusually stable helix formatoin in short alanine-based peptides
-
Marqusee, S., Robbins, V. H., and Baldwin, R. L. (1989) Unusually stable helix formatoin in short alanine-based peptides Proc. Natl. Acad. Sci. U.S.A. 86, 5286-5290
-
(1989)
Proc. Natl. Acad. Sci. U.S.A.
, vol.86
, pp. 5286-5290
-
-
Marqusee, S.1
Robbins, V.H.2
Baldwin, R.L.3
-
13
-
-
0036784911
-
Arrangement of subunits and ordering of β-strands in an amyloid sheet
-
Serag, A. A., Altenbach, C., Gingery, M., Hubbell, W. L., and Yeates, T. O. (2002) Arrangement of subunits and ordering of β-strands in an amyloid sheet Nat. Struct. Biol. 9, 734-739
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 734-739
-
-
Serag, A.A.1
Altenbach, C.2
Gingery, M.3
Hubbell, W.L.4
Yeates, T.O.5
-
14
-
-
0037397705
-
Emerging ideas on the molecular basis of protein and peptide aggregation
-
Thirumalai, D., Klimov, D. K., and Dima, R. I. (2003) Emerging ideas on the molecular basis of protein and peptide aggregation Curr. Opin. Struct. Biol. 13, 146-159
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 146-159
-
-
Thirumalai, D.1
Klimov, D.K.2
Dima, R.I.3
-
15
-
-
20444403757
-
Prediction of "aggregation-prone" and "aggregation- susceptible" regions in proteins associated with neurodegenerative diseases
-
Pawar, A. P., Dubay, K. F., Zurdo, J., Chiti, F., Vendruscolo, M., and Dobson, C. M. (2005) Prediction of "aggregation-prone" and "aggregation-susceptible" regions in proteins associated with neurodegenerative diseases J. Mol. Biol. 350, 379-392
-
(2005)
J. Mol. Biol.
, vol.350
, pp. 379-392
-
-
Pawar, A.P.1
Dubay, K.F.2
Zurdo, J.3
Chiti, F.4
Vendruscolo, M.5
Dobson, C.M.6
-
16
-
-
33745027667
-
Folding and aggregation kinetics of a β-hairpin
-
Munoz, V., Ghirlando, R., Blanco, F. J., Jas, G. S., Hofrichter, J., and Eaton, W. A. (2006) Folding and aggregation kinetics of a β-hairpin Biochemistry 45, 7023-7035
-
(2006)
Biochemistry
, vol.45
, pp. 7023-7035
-
-
Munoz, V.1
Ghirlando, R.2
Blanco, F.J.3
Jas, G.S.4
Hofrichter, J.5
Eaton, W.A.6
-
17
-
-
41549143931
-
De novo design of strand-swapped β-hairpin hydrogels
-
Nagarkar, R. P., Hule, R. A., Pochan, D. J., and Schneider, J. P. (2008) De novo design of strand-swapped β-hairpin hydrogels J. Am. Chem. Soc. 130, 4466-4474
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 4466-4474
-
-
Nagarkar, R.P.1
Hule, R.A.2
Pochan, D.J.3
Schneider, J.P.4
-
18
-
-
77953518502
-
Polyglutamine fibrils are formed using a simple designed β-hairpin model
-
Smith, M. H., Miles, T. F., Sheehan, M., Alfieri, K. N., Kokona, B., and Fairman, R. (2010) Polyglutamine fibrils are formed using a simple designed β-hairpin model Proteins: Struct., Funct., Bioinf. 78, 1971-1979
-
(2010)
Proteins: Struct., Funct., Bioinf.
, vol.78
, pp. 1971-1979
-
-
Smith, M.H.1
Miles, T.F.2
Sheehan, M.3
Alfieri, K.N.4
Kokona, B.5
Fairman, R.6
-
19
-
-
0035823520
-
Analysis of the minimal amyloid-forming fragment of the islet amyloid polypeptide: An experimental support for the key role of the phenylalanine residue in amyloid formation
-
Azriel, R. and Gazit, E. (2001) Analysis of the minimal amyloid-forming fragment of the islet amyloid polypeptide: An experimental support for the key role of the phenylalanine residue in amyloid formation J. Biol. Chem. 276, 34156-34161
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 34156-34161
-
-
Azriel, R.1
Gazit, E.2
-
20
-
-
1542600164
-
Mapping Aβ amyloid fibril secondary structure using scanning proline mutagenesis
-
Williams, A. D., Portelius, E., Kheterpal, I., Guo, J.-t., Cook, K. D., Xu, Y., and Wetzel, R. (2004) Mapping Aβ amyloid fibril secondary structure using scanning proline mutagenesis J. Mol. Biol. 335, 833-842
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 833-842
-
-
Williams, A.D.1
Portelius, E.2
Kheterpal, I.3
Guo, J.-T.4
Cook, K.D.5
Xu, Y.6
Wetzel, R.7
-
21
-
-
78751674190
-
Clarifying the influence of core amino acid hydrophobicity, secondary structure propensity, and molecular volume on amyloid-β 16-22 self-assembly
-
Senguen, F. T., Doran, T. M., Anderson, E. A., and Nilsson, B. L. (2011) Clarifying the influence of core amino acid hydrophobicity, secondary structure propensity, and molecular volume on amyloid-β 16-22 self-assembly Mol. BioSyst. 7, 497-510
-
(2011)
Mol. BioSyst.
, vol.7
, pp. 497-510
-
-
Senguen, F.T.1
Doran, T.M.2
Anderson, E.A.3
Nilsson, B.L.4
-
22
-
-
84872201218
-
Aliphatic peptides show similar self-assembly to amyloid core sequences, challenging the importance of aromatic interactions in amyloidosis
-
Lakshmanan, A., Cheong, D. W., Accardo, A., Di Fabrizio, E., Riekel, C., and Hauser, C. A. E. (2013) Aliphatic peptides show similar self-assembly to amyloid core sequences, challenging the importance of aromatic interactions in amyloidosis Proc. Natl. Acad. Sci. U.S.A. 110, 519-524
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 519-524
-
-
Lakshmanan, A.1
Cheong, D.W.2
Accardo, A.3
Di Fabrizio, E.4
Riekel, C.5
Hauser, C.A.E.6
-
23
-
-
0035826776
-
Tryptophan zippers: Stable, monomeric β-hairpins
-
Cochran, A. G., Skelton, N. J., and Starovasnik, M. A. (2001) Tryptophan zippers: Stable, monomeric β-hairpins Proc. Natl. Acad. Sci. U.S.A. 98, 5578-5583
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 5578-5583
-
-
Cochran, A.G.1
Skelton, N.J.2
Starovasnik, M.A.3
-
24
-
-
8644237364
-
Understanding the key factors that control the rate of β-hairpin folding
-
Du, D., Zhu, Y., Huang, C. Y., and Gai, F. (2004) Understanding the key factors that control the rate of β-hairpin folding Proc. Natl. Acad. Sci. U.S.A. 101, 15915-15920
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 15915-15920
-
-
Du, D.1
Zhu, Y.2
Huang, C.Y.3
Gai, F.4
-
25
-
-
66349126308
-
Cross-strand coupling and site-specific unfolding thermodynamics of a trpzip β-hairpin peptide using C-13 isotopic labeling and IR spectroscopy
-
Huang, R., Wu, L., McElheny, D., Bour, P., Roy, A., and Keiderling, T. A. (2009) Cross-strand coupling and site-specific unfolding thermodynamics of a trpzip β-hairpin peptide using C-13 isotopic labeling and IR spectroscopy J. Phys. Chem. B 113, 5661-5674
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 5661-5674
-
-
Huang, R.1
Wu, L.2
McElheny, D.3
Bour, P.4
Roy, A.5
Keiderling, T.A.6
-
26
-
-
84866163791
-
Impact of β-turn sequence on β-hairpin dynamics studied with infrared-detected temperature jump
-
Popp, A., Wu, L., Keiderling, T. A., and Hauser, K. (2012) Impact of β-turn sequence on β-hairpin dynamics studied with infrared-detected temperature jump Spectroscopy 27, 557-564
-
(2012)
Spectroscopy
, vol.27
, pp. 557-564
-
-
Popp, A.1
Wu, L.2
Keiderling, T.A.3
Hauser, K.4
-
27
-
-
84874227957
-
Folding of a heterogeneous β-hairpin peptide from temperature-jump 2D IR spectroscopy
-
Jones, K. C., Peng, C. S., and Tokmakoff, A. (2013) Folding of a heterogeneous β-hairpin peptide from temperature-jump 2D IR spectroscopy Proc. Natl. Acad. Sci. U.S.A. 110, 2828-2833
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 2828-2833
-
-
Jones, K.C.1
Peng, C.S.2
Tokmakoff, A.3
-
28
-
-
1642570290
-
Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy
-
Snow, C. D., Qiu, L., Du, D., Gai, F., Hagen, S. J., and Pande, V. S. (2004) Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy Proc. Natl. Acad. Sci. U.S.A. 101, 4077-4082
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 4077-4082
-
-
Snow, C.D.1
Qiu, L.2
Du, D.3
Gai, F.4
Hagen, S.J.5
Pande, V.S.6
-
29
-
-
61749093139
-
Relationship between hydrophobic interactions and secondary structure stability for trpzip β-hairpin peptides
-
Takekiyo, T., Wu, L., Yoshimura, Y., Shimizu, A., and Keiderling, T. A. (2009) Relationship between hydrophobic interactions and secondary structure stability for trpzip β-hairpin peptides Biochemistry 48, 1543-1552
-
(2009)
Biochemistry
, vol.48
, pp. 1543-1552
-
-
Takekiyo, T.1
Wu, L.2
Yoshimura, Y.3
Shimizu, A.4
Keiderling, T.A.5
-
30
-
-
0347130904
-
Heterogeneous folding of the trpzip hairpin: Full atom simulation and experiment
-
Yang, W. Y., Pitera, J. W., Swope, W. C., and Gruebele, M. (2004) Heterogeneous folding of the trpzip hairpin: Full atom simulation and experiment J. Mol. Biol. 336, 241-251
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 241-251
-
-
Yang, W.Y.1
Pitera, J.W.2
Swope, W.C.3
Gruebele, M.4
-
31
-
-
16844371842
-
Tryptophan side chain electrostatic interactions determine edge-to-face vs parallel-displaced tryptophan side chain geometries in the designed β-hairpin "trpzip2"
-
Guvench, O. and Brooks, C. L. (2005) Tryptophan side chain electrostatic interactions determine edge-to-face vs parallel-displaced tryptophan side chain geometries in the designed β-hairpin "trpzip2" J. Am. Chem. Soc. 127, 4668-4674
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 4668-4674
-
-
Guvench, O.1
Brooks, C.L.2
-
32
-
-
25444506927
-
Residual native structure in a thermally denatured β-hairpin
-
Smith, A. W., Chung, H. S., Ganim, Z., and Tokmakoff, A. (2005) Residual native structure in a thermally denatured β-hairpin J. Phys. Chem. B 109, 17025-17027
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 17025-17027
-
-
Smith, A.W.1
Chung, H.S.2
Ganim, Z.3
Tokmakoff, A.4
-
33
-
-
48849103160
-
Time-resolved temperature-jump infrared spectroscopy of peptides with well-defined secondary structure: A trpzip β-hairpin variant as an example
-
Krejtschi, C., Huang, R., Keiderling, T. A., and Hauser, K. (2008) Time-resolved temperature-jump infrared spectroscopy of peptides with well-defined secondary structure: A trpzip β-hairpin variant as an example Vib. Spectrosc. 48, 1-7
-
(2008)
Vib. Spectrosc.
, vol.48
, pp. 1-7
-
-
Krejtschi, C.1
Huang, R.2
Keiderling, T.A.3
Hauser, K.4
-
34
-
-
67449097467
-
Solvent friction changes the folding pathway of the tryptophan zipper TZ2
-
Narayanan, R., Pelakh, L., and Hagen, S. J. (2009) Solvent friction changes the folding pathway of the tryptophan zipper TZ2 J. Mol. Biol. 390, 538-546
-
(2009)
J. Mol. Biol.
, vol.390
, pp. 538-546
-
-
Narayanan, R.1
Pelakh, L.2
Hagen, S.J.3
-
35
-
-
67149138047
-
Energy landscape of the trpzip2 peptide
-
Nymeyer, H. (2009) Energy landscape of the trpzip2 peptide J. Phys. Chem. B 113, 8288-8295
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 8288-8295
-
-
Nymeyer, H.1
-
36
-
-
61949111766
-
Thermodynamics and folding pathways of trpzip2: An accelerated molecular dynamics simulation study
-
Yang, L. J., Shao, Q., and Gao, Y. Q. (2009) Thermodynamics and folding pathways of trpzip2: An accelerated molecular dynamics simulation study J. Phys. Chem. B 113, 803-808
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 803-808
-
-
Yang, L.J.1
Shao, Q.2
Gao, Y.Q.3
-
37
-
-
77955383498
-
Structural classification of the amide i sites of a β-hairpin with isotope label 2DIR spectroscopy
-
Roy, S., Jansen, T. L. C., and Knoester, J. (2010) Structural classification of the amide I sites of a β-hairpin with isotope label 2DIR spectroscopy Phys. Chem. Chem. Phys. 12, 9347-9357
-
(2010)
Phys. Chem. Chem. Phys.
, vol.12
, pp. 9347-9357
-
-
Roy, S.1
Jansen, T.L.C.2
Knoester, J.3
-
38
-
-
84862062006
-
Using thioamides to site-specifically interrogate the dynamics of hydrogen bond formation in β-sheet folding
-
Culik, R. M., Jo, H., DeGrado, W. F., and Gai, F. (2012) Using thioamides to site-specifically interrogate the dynamics of hydrogen bond formation in β-sheet folding J. Am. Chem. Soc. 134, 8026-8029
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 8026-8029
-
-
Culik, R.M.1
Jo, H.2
Degrado, W.F.3
Gai, F.4
-
39
-
-
0029878720
-
VMD: Visual molecular dynamics
-
Humphrey, W., Dalke, A., and Schulten, K. (1996) VMD: Visual molecular dynamics J. Mol. Graphics 14, 33-38
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
40
-
-
1842326139
-
Bayesian statistical analysis of protein side-chain rotamer preferences
-
Dunbrack, R. L. and Cohen, F. E. (1997) Bayesian statistical analysis of protein side-chain rotamer preferences Protein Sci. 6, 1661-1681
-
(1997)
Protein Sci.
, vol.6
, pp. 1661-1681
-
-
Dunbrack, R.L.1
Cohen, F.E.2
-
41
-
-
0033571653
-
Sidechain interactions in parallel β sheets: The energetics of cross-strand pairings
-
Merkel, J. S., Sturtevant, J. M., and Regan, L. (1999) Sidechain interactions in parallel β sheets: The energetics of cross-strand pairings Structure 7, 1333-1343
-
(1999)
Structure
, vol.7
, pp. 1333-1343
-
-
Merkel, J.S.1
Sturtevant, J.M.2
Regan, L.3
-
42
-
-
0001356727
-
Photosensitive protecting groups
-
Patchorn, A., Amit, B., and Woodward, R. B. (1970) Photosensitive protecting groups J. Am. Chem. Soc. 92, 6333-6335
-
(1970)
J. Am. Chem. Soc.
, vol.92
, pp. 6333-6335
-
-
Patchorn, A.1
Amit, B.2
Woodward, R.B.3
-
43
-
-
0027529269
-
Synthesis of Nα-Fmoc-Nε-Nvoc-lysine and use in the preparation of selectively functionalized peptides
-
Rusiecki, V. K. and Warne, S. A. (1993) Synthesis of Nα-Fmoc- Nε-Nvoc-lysine and use in the preparation of selectively functionalized peptides Bioorg. Med. Chem. Lett. 3, 707-710
-
(1993)
Bioorg. Med. Chem. Lett.
, vol.3
, pp. 707-710
-
-
Rusiecki, V.K.1
Warne, S.A.2
-
44
-
-
84867518732
-
Light-triggered disassembly of amyloid fibrils
-
Measey, T. J. and Gai, F. (2012) Light-triggered disassembly of amyloid fibrils Langmuir 28, 12588-12592
-
(2012)
Langmuir
, vol.28
, pp. 12588-12592
-
-
Measey, T.J.1
Gai, F.2
-
45
-
-
84880921076
-
Amide i band and photoinduced disassembly of a peptide hydrogel
-
Measey, T. J., Markiewicz, B. N., and Gai, F. (2013) Amide I band and photoinduced disassembly of a peptide hydrogel Chem. Phys. Lett. 580, 135-140
-
(2013)
Chem. Phys. Lett.
, vol.580
, pp. 135-140
-
-
Measey, T.J.1
Markiewicz, B.N.2
Gai, F.3
-
46
-
-
0037022567
-
Helix formation via conformation diffusion search
-
Huang, C.-Y., Getahun, Z., Zhu, Y., Klemke, J. W., DeGrado, W. F., and Gai, F. (2002) Helix formation via conformation diffusion search Proc. Natl. Acad. Sci. U.S.A. 99, 2788-2793
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 2788-2793
-
-
Huang, C.-Y.1
Getahun, Z.2
Zhu, Y.3
Klemke, J.W.4
Degrado, W.F.5
Gai, F.6
-
47
-
-
0032558087
-
A Caged Protein Kinase Inhibitor
-
Wood, J. S., Koszelak, M., Liu, J., and Lawrence, D. S. (1998) A Caged Protein Kinase Inhibitor J. Am. Chem. Soc. 120, 7145-7146
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 7145-7146
-
-
Wood, J.S.1
Koszelak, M.2
Liu, J.3
Lawrence, D.S.4
-
48
-
-
84889874456
-
Light-Actived Proteins: An Overview
-
In (Goeldner, M. and Givens, R. Eds.) pp, Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany.
-
Loudwig, S. and Bayley, H. (2005) Light-Actived Proteins: An Overview. In Dynamic Studies in Biology: Phototriggers, Photoswitches and Caged Biomolecules (Goeldner, M. and Givens, R., Eds.) pp 253-303, Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany.
-
(2005)
Dynamic Studies in Biology: Phototriggers, Photoswitches and Caged Biomolecules
, pp. 253-303
-
-
Loudwig, S.1
Bayley, H.2
-
49
-
-
84857870134
-
Photolysis of ortho-nitrobenzylic derivatives: The importance of the leaving group
-
Solomek, T., Mercier, S., Bally, T., and Bochet, C. G. (2012) Photolysis of ortho-nitrobenzylic derivatives: The importance of the leaving group Photochem. Photobiol. Sci. 11, 548-555
-
(2012)
Photochem. Photobiol. Sci.
, vol.11
, pp. 548-555
-
-
Solomek, T.1
Mercier, S.2
Bally, T.3
Bochet, C.G.4
-
50
-
-
0035814332
-
Differentiation of β-sheet-forming structures: Ab initio-based simulations of IR absorption and vibrational CD for model peptide and protein β-sheets
-
Kubelka, J. and Keiderling, T. A. (2001) Differentiation of β-sheet-forming structures: Ab initio-based simulations of IR absorption and vibrational CD for model peptide and protein β-sheets J. Am. Chem. Soc. 123, 12048-12058
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 12048-12058
-
-
Kubelka, J.1
Keiderling, T.A.2
-
51
-
-
0028804827
-
Structural model for the β-amyloid fibril based on interstrand alignment of an antiparallel-sheet comprising a C-terminal peptide
-
Lansbury, P. T., Jr., Costa, P. R., Griffiths, J. M., Simon, E. J., Auger, M., Halverson, K. J., Kocisko, D. A., Hendsch, Z. S., Ashburn, T. T., and Spencer, R. G. 1995, Structural model for the β-amyloid fibril based on interstrand alignment of an antiparallel-sheet comprising a C-terminal peptide Nat. Struct. Biol. 2, 990-998
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 990-998
-
-
Lansbury Jr., P.T.1
Costa, P.R.2
Griffiths, J.M.3
Simon, E.J.4
Auger, M.5
Halverson, K.J.6
Kocisko, D.A.7
Hendsch, Z.S.8
Ashburn, T.T.9
Spencer, R.G.10
-
52
-
-
11344272213
-
Local amide i mode frequencies and coupling constants in multiple-stranded antiparallel β-sheet polypeptides
-
Lee, C. and Cho, M. (2004) Local amide I mode frequencies and coupling constants in multiple-stranded antiparallel β-sheet polypeptides J. Phys. Chem. B 108, 20397-20407
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 20397-20407
-
-
Lee, C.1
Cho, M.2
-
53
-
-
9044229145
-
On the nucleation and growth of amyloid β-protein fibrils: Detection of nuclei and quantitation of rate constants
-
Lomakin, A., Chung, D. S., Benedek, G. B., Kirschner, D. A., and Teplow, D. B. (1996) On the nucleation and growth of amyloid β-protein fibrils: Detection of nuclei and quantitation of rate constants Proc. Natl. Acad. Sci. U.S.A. 93, 1125-1129
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 1125-1129
-
-
Lomakin, A.1
Chung, D.S.2
Benedek, G.B.3
Kirschner, D.A.4
Teplow, D.B.5
-
54
-
-
26444514550
-
Intersheet rearrangement of polypeptides during nucleation of β-sheet aggregates
-
Petty, S. A. and Decatur, S. M. (2005) Intersheet rearrangement of polypeptides during nucleation of β-sheet aggregates Proc. Natl. Acad. Sci. U.S.A. 102, 14272-14277
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 14272-14277
-
-
Petty, S.A.1
Decatur, S.M.2
-
55
-
-
43449118401
-
Time-resolved infrared spectroscopy of pH-induced aggregation of the alzheimer Aβ1-28 peptide
-
Perálvarez-Marín, A., Barth, A., and Gräslund, A. (2008) Time-resolved infrared spectroscopy of pH-induced aggregation of the alzheimer Aβ1-28 peptide J. Mol. Biol. 379, 589-596
-
(2008)
J. Mol. Biol.
, vol.379
, pp. 589-596
-
-
Perálvarez-Marín, A.1
Barth, A.2
Gräslund, A.3
-
56
-
-
0037047118
-
The protofilament structure of insulin amyloid fibrils
-
Jimenez, J. L., Nettleton, E. J., Bouchard, M., Robinson, C. V., Dobson, C. M., and Saibil, H. R. (2002) The protofilament structure of insulin amyloid fibrils Proc. Natl. Acad. Sci. U.S.A. 99, 9196-9201
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 9196-9201
-
-
Jimenez, J.L.1
Nettleton, E.J.2
Bouchard, M.3
Robinson, C.V.4
Dobson, C.M.5
Saibil, H.R.6
-
57
-
-
0037168655
-
A structural model for Alzheimer's β-amyloid fibrils based on experimental constraints from solid state NMR
-
Petkova, A. T., Ishii, Y., Balbach, J. J., Antzutkin, O. N., Leapman, R. D., Delaglio, F., and Tycko, R. (2002) A structural model for Alzheimer's β-amyloid fibrils based on experimental constraints from solid state NMR Proc. Natl. Acad. Sci. U.S.A. 99, 16742-16747
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 16742-16747
-
-
Petkova, A.T.1
Ishii, Y.2
Balbach, J.J.3
Antzutkin, O.N.4
Leapman, R.D.5
Delaglio, F.6
Tycko, R.7
-
58
-
-
9344243513
-
FTIR reveals structural differences between native β-sheet proteins and amyloid fibrils
-
Zandomeneghi, G., Krebs, M. R., McCammon, M. G., and Fandrich, M. (2004) FTIR reveals structural differences between native β-sheet proteins and amyloid fibrils Protein Sci. 13, 3314-3321
-
(2004)
Protein Sci.
, vol.13
, pp. 3314-3321
-
-
Zandomeneghi, G.1
Krebs, M.R.2
McCammon, M.G.3
Fandrich, M.4
-
59
-
-
33947314274
-
Hydrophobic surface burial is the major stability determinant of a flat, single-layer β-sheet
-
Yan, S., Gawlak, G., Makabe, K., Tereshko, V., Koide, A., and Koide, S. (2007) Hydrophobic surface burial is the major stability determinant of a flat, single-layer β-sheet J. Mol. Biol. 368, 230-243
-
(2007)
J. Mol. Biol.
, vol.368
, pp. 230-243
-
-
Yan, S.1
Gawlak, G.2
Makabe, K.3
Tereshko, V.4
Koide, A.5
Koide, S.6
-
60
-
-
84864686048
-
Role of β-hairpin formation in aggregation: The self-assembly of the amyloid-β(25-35) peptide
-
Larini, L. and Shea, J.-E. (2012) Role of β-hairpin formation in aggregation: The self-assembly of the amyloid-β(25-35) peptide Biophys. J. 103, 576-586
-
(2012)
Biophys. J.
, vol.103
, pp. 576-586
-
-
Larini, L.1
Shea, J.-E.2
-
61
-
-
84858663186
-
Antiparallel β-sheet architecture in Iowa-mutant β-amyloid fibrils
-
Qiang, W., Yau, W.-M., Luo, Y., Mattson, M. P., and Tycko, R. (2012) Antiparallel β-sheet architecture in Iowa-mutant β-amyloid fibrils Proc. Natl. Acad. Sci. U.S.A. 109, 4443-4448
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 4443-4448
-
-
Qiang, W.1
Yau, W.-M.2
Luo, Y.3
Mattson, M.P.4
Tycko, R.5
-
62
-
-
0028716614
-
Contributions of tryptophan side chains to the circular dichroism of globular proteins: Exciton couplets and coupled oscillators
-
Grishina, I. B. and Woody, R. W. (1994) Contributions of tryptophan side chains to the circular dichroism of globular proteins: Exciton couplets and coupled oscillators Faraday Discuss. 245-262
-
(1994)
Faraday Discuss.
, pp. 245-262
-
-
Grishina, I.B.1
Woody, R.W.2
-
63
-
-
70350495817
-
Role of tryptophan-tryptophan interactions in trpzip β-hairpin formation, structure, and stability
-
Wu, L., McElheny, D., Huang, R., and Keiderling, T. A. (2009) Role of tryptophan-tryptophan interactions in trpzip β-hairpin formation, structure, and stability Biochemistry 48, 10362-10371
-
(2009)
Biochemistry
, vol.48
, pp. 10362-10371
-
-
Wu, L.1
McElheny, D.2
Huang, R.3
Keiderling, T.A.4
-
64
-
-
0026682931
-
Solution conformations and aggregational properties of synthetic amyloid β-peptides of Alzheimer's disease: Analysis of circular-dichroism spectra
-
Barrow, C. J., Yasuda, A., Kenny, P. T. M., and Zagorski, M. G. (1992) Solution conformations and aggregational properties of synthetic amyloid β-peptides of Alzheimer's disease: Analysis of circular-dichroism spectra J. Mol. Biol. 225, 1075-1093
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 1075-1093
-
-
Barrow, C.J.1
Yasuda, A.2
Kenny, P.T.M.3
Zagorski, M.G.4
-
65
-
-
84872786265
-
Nernst-Planck model of photo-triggered, pH-tunable ionic transport through nanopores functionalized with "caged" lysine chains
-
Nasir, S., Ramirez, P., Ali, M., Ahmed, I., Fruk, L., Mafe, S., and Ensinger, W. (2013) Nernst-Planck model of photo-triggered, pH-tunable ionic transport through nanopores functionalized with "caged" lysine chains J. Chem. Phys. 138, 034709-034711
-
(2013)
J. Chem. Phys.
, vol.138
, pp. 034709-034711
-
-
Nasir, S.1
Ramirez, P.2
Ali, M.3
Ahmed, I.4
Fruk, L.5
Mafe, S.6
Ensinger, W.7
-
66
-
-
38049011270
-
Selective acylation of primary amines in peptides and proteins
-
Abello, N., Kerstjens, H. A. M., Postma, D. S., and Bischoff, R. (2007) Selective acylation of primary amines in peptides and proteins J. Proteome Res. 6, 4770-4776
-
(2007)
J. Proteome Res.
, vol.6
, pp. 4770-4776
-
-
Abello, N.1
Kerstjens, H.A.M.2
Postma, D.S.3
Bischoff, R.4
-
67
-
-
77949546659
-
Protein chemical modification on endogenous amino acids
-
Basle, E., Joubert, N., and Pucheault, M. (2010) Protein chemical modification on endogenous amino acids Chem. Biol. 17, 213-227
-
(2010)
Chem. Biol.
, vol.17
, pp. 213-227
-
-
Basle, E.1
Joubert, N.2
Pucheault, M.3
-
68
-
-
0019536747
-
Infrared and laser-Raman spectroscopic studies of thermally-induced globular protein gels
-
Clark, A. H., Saunderson, D. H., and Suggett, A. (1981) Infrared and laser-Raman spectroscopic studies of thermally-induced globular protein gels Int. J. Pept. Protein Res. 17, 353-364
-
(1981)
Int. J. Pept. Protein Res.
, vol.17
, pp. 353-364
-
-
Clark, A.H.1
Saunderson, D.H.2
Suggett, A.3
-
69
-
-
0023693897
-
Structural and conformational changes of β-lactoglobulin B: An infrared spectroscopic study of the effect of pH and temperature
-
Casal, H. L., Kohler, U., and Mantsch, H. H. (1988) Structural and conformational changes of β-lactoglobulin B: An infrared spectroscopic study of the effect of pH and temperature Biochim. Biophys. Acta 957, 11-20
-
(1988)
Biochim. Biophys. Acta
, vol.957
, pp. 11-20
-
-
Casal, H.L.1
Kohler, U.2
Mantsch, H.H.3
-
70
-
-
0027469789
-
Secondary structure and temperature behavior of the acetylcholine receptor by Fourier transform infrared spectroscopy
-
Naumann, D., Schultz, C., Gorne-Tschelnokow, U., and Hucho, F. (1993) Secondary structure and temperature behavior of the acetylcholine receptor by Fourier transform infrared spectroscopy Biochemistry 32, 3162-3168
-
(1993)
Biochemistry
, vol.32
, pp. 3162-3168
-
-
Naumann, D.1
Schultz, C.2
Gorne-Tschelnokow, U.3
Hucho, F.4
-
71
-
-
0027323183
-
Secondary structure and temperature-induced unfolding and refolding of ribonuclease T1 in aqueous solution. A Fourier transform infrared spectroscopic study
-
Fabian, H., Schultz, C., Naumann, D., Landt, O., Hahn, U., and Saenger, W. (1993) Secondary structure and temperature-induced unfolding and refolding of ribonuclease T1 in aqueous solution. A Fourier transform infrared spectroscopic study J. Mol. Biol. 232, 967-981
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 967-981
-
-
Fabian, H.1
Schultz, C.2
Naumann, D.3
Landt, O.4
Hahn, U.5
Saenger, W.6
-
72
-
-
44949247333
-
Molecular design of β-hairpin peptides for material construction
-
Rughani, R. V. and Schneider, J. P. (2008) Molecular design of β-hairpin peptides for material construction MRS Bull. 33, 530-535
-
(2008)
MRS Bull.
, vol.33
, pp. 530-535
-
-
Rughani, R.V.1
Schneider, J.P.2
-
73
-
-
28844449157
-
Light-activated hydrogel formation via the triggered folding and self-assembly of a designed peptide
-
Haines, L. A., Rajagopal, K., Ozbas, B., Salick, D. A., Pochan, D. J., and Schneider, J. P. (2005) Light-activated hydrogel formation via the triggered folding and self-assembly of a designed peptide J. Am. Chem. Soc. 127, 17025-17029
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 17025-17029
-
-
Haines, L.A.1
Rajagopal, K.2
Ozbas, B.3
Salick, D.A.4
Pochan, D.J.5
Schneider, J.P.6
-
74
-
-
33746734322
-
Biologically active molecules with a "light switch"
-
Mayer, G. and Heckel, A. (2006) Biologically active molecules with a "light switch" Angew. Chem., Int. Ed. 45, 4900-4921
-
(2006)
Angew. Chem., Int. Ed.
, vol.45
, pp. 4900-4921
-
-
Mayer, G.1
Heckel, A.2
-
75
-
-
77953193351
-
Light controlled protein release from a supramolecular hydrogel
-
Peng, K., Tomatsu, I., and Kros, A. (2010) Light controlled protein release from a supramolecular hydrogel Chem. Commun. 46, 4094-4096
-
(2010)
Chem. Commun.
, vol.46
, pp. 4094-4096
-
-
Peng, K.1
Tomatsu, I.2
Kros, A.3
-
76
-
-
79961211353
-
Nanomechanics of functional and pathological amyloid materials
-
Knowles, T. P. J. and Buehler, M. J. (2011) Nanomechanics of functional and pathological amyloid materials Nat. Nanotechnol. 6, 469-479
-
(2011)
Nat. Nanotechnol.
, vol.6
, pp. 469-479
-
-
Knowles, T.P.J.1
Buehler, M.J.2
|