-
1
-
-
0035826776
-
Tryptophan zippers: Stable, monomeric beta-hairpins
-
Cochran, A. G., Skelton, N. J., and Starovasnik, M. A. (2001) Tryptophan zippers: stable, monomeric beta-hairpins. Proc. Natl. Acad. Sci. U.S.A. 98, 5578-5583.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 5578-5583
-
-
Cochran, A.G.1
Skelton, N.J.2
Starovasnik, M.A.3
-
2
-
-
0033529946
-
Understanding β-hairpin formation
-
Dinner, A. R., Lazaridis, T., and Karplus, M. (1999) Understanding β-hairpin formation. Proc. Natl. Acad. Sci. U.S.A. 96, 9068-9073.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 9068-9073
-
-
Dinner, A.R.1
Lazaridis, T.2
Karplus, M.3
-
3
-
-
0542397796
-
Kinetics and Dynamics of Loops, alpha-Helices, beta-Hairpins, and Fast-Folding Proteins
-
Eaton, W. A., Munoz, V., Thompson, P. A., Henry, E. R., and Hofrichter, J. (1998) Kinetics and dynamics of loops, alpha-helices, beta-hairpins, and fast-folding proteins]. Acc. Chem. Res. 31, 745-753. (Pubitemid 128474541)
-
(1998)
Accounts of Chemical Research
, vol.31
, Issue.11
, pp. 745-753
-
-
Eaton, W.A.1
Munoz, V.2
Thompson, P.A.3
Henry, E.R.4
Hofrichter, J.5
-
4
-
-
0032246263
-
Minimal model systems for β-sheet secondary structure in proteins
-
Gellman, S. H. (1998) Minimal model systems for β-sheet secondary structure in proteins. Curr. Opin. Struct. Biol. 2, 717-725.
-
(1998)
Curr. Opin. Struct. Biol.
, vol.2
, pp. 717-725
-
-
Gellman, S.H.1
-
5
-
-
0038546798
-
Optical spectroscopic investigations of model beta-sheet hairpins in aqueous solution
-
Hilario, J., Kubelka, J., and Keiderling, T. A. (2003) Optical spectroscopic investigations of model beta-sheet hairpins in aqueous solution. J. Am. Chem. Soc. 125, 7562-7574.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 7562-7574
-
-
Hilario, J.1
Kubelka, J.2
Keiderling, T.A.3
-
6
-
-
0034598946
-
Molecular dynamics simulations of a β-hairpin fragment of protein G: Balance between side-chain and backbone forces
-
Ma, B., and Nussinov, R. (2000) Molecular dynamics simulations of a β-hairpin fragment of protein G: balance between side-chain and backbone forces. J. Mol. Biol. 296, 1091-1104.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 1091-1104
-
-
Ma, B.1
Nussinov, R.2
-
7
-
-
0032507251
-
Origin of β-hairpin stability in solution: Structural and thermodynamic analysis of the folding of a model peptide supports hydrophobic stabilization in water
-
Maynard, A. J., Sharman, G. J., and Searle, M. S. (1998) Origin of β-hairpin stability in solution: structural and thermodynamic analysis of the folding of a model peptide supports hydrophobic stabilization in water. J. Am. Chem. Soc. 120, 1996-2007.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 1996-2007
-
-
Maynard, A.J.1
Sharman, G.J.2
Searle, M.S.3
-
8
-
-
0038502170
-
Folding dynamics and mechanism of beta-hairpin formation
-
DOI 10.1038/36626
-
Munoz, V., Thompson, P. A., and Hofrichter, J. (1997) Folding dynamics and mechanism of beta-hairpin formation. Nature 390, 196-199. (Pubitemid 27507992)
-
(1997)
Nature
, vol.390
, Issue.6656
, pp. 196-199
-
-
Munoz, V.1
Thompson, P.A.2
Hofrichter, J.3
Eaton, W.A.4
-
9
-
-
0035834063
-
Length-dependent stability and strand length limits in antiparallel β-sheet secondary structure
-
Stanger, H. E., Syud, F. A., Espinosa, J. F., Giriat, I., Muir, T., and Gellman, S. H. (2001) Length-dependent stability and strand length limits in antiparallel β-sheet secondary structure. Proc. Natl. Acad. Sci. U.S.A. 98, 12015-12020.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 12015-12020
-
-
Stanger, H.E.1
Syud, F.A.2
Espinosa, J.F.3
Giriat, I.4
Muir, T.5
Gellman, S.H.6
-
10
-
-
0030908095
-
Models of amyloid seeding in Alzheimers desease and scrapie: Mechanistic truths and physiological consequences of the time-dependent solubility of amyloid proteins
-
Harper, J. D., and Lansbury, P. T. (1997) Models of amyloid seeding in Alzheimers desease and scrapie: mechanistic truths and physiological consequences of the time-dependent solubility of amyloid proteins. Annu. Rev. Biochem. 66, 385-407.
-
(1997)
Annu. Rev. Biochem.
, vol.66
, pp. 385-407
-
-
Harper, J.D.1
Lansbury, P.T.2
-
11
-
-
33746608515
-
Model Systems for β-hairpins and β-sheets
-
Hughes, R. M., and Waters, M. L. (2006) Model Systems for β-hairpins and β-sheets. Curr. Opin. Struct. Biol. 16, 514-524.
-
(2006)
Curr. Opin. Struct. Biol.
, vol.16
, pp. 514-524
-
-
Hughes, R.M.1
Waters, M.L.2
-
12
-
-
0037304420
-
Turn stability in β-hairpin peptides: Investigation of peptides containing 3:5 type I G1 bulge turns
-
DOI 10.1110/ps.0228603
-
Blandl, T., Cochran, A. G., and Skelton, N. J. (2003) Turn stability in β-hairpin peptides: investigation of peptides containing 3:5 type I G1 bulge turns. Protein Sci. 12, 237-247. (Pubitemid 36120336)
-
(2003)
Protein Science
, vol.12
, Issue.2
, pp. 237-247
-
-
Blandl, T.1
Cochran, A.G.2
Skelton, N.J.3
-
13
-
-
0034694688
-
Designing stable β-hairpin: Energetic contributions from cross-strand residues
-
Russell, S. J., and Cochran, A. G. (2000) Designing stable β-hairpin: energetic contributions from cross-strand residues. J. Am. Chem. Soc. 122, 12600-12601.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 12600-12601
-
-
Russell, S.J.1
Cochran, A.G.2
-
14
-
-
0032568537
-
A statistical mechanical model for β-hairpin kinetics
-
Munoz, V., Henry, E. R., Hofrichter, J., and Eaton, W. A. (1998) A statistical mechanical model for β-hairpin kinetics. Proc. Natl. Acad. Sci. U.S.A. 95, 5872-5879.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 5872-5879
-
-
Munoz, V.1
Henry, E.R.2
Hofrichter, J.3
Eaton, W.A.4
-
15
-
-
32344433535
-
β-Sheet folding mechanisms from pertubation energetics
-
Deechongkit, S., Jager, M., Nguyen, H., Powers, E. T., Gruebele, M., and Kelly, J. W. (2006) β-Sheet folding mechanisms from pertubation energetics. Curr. Opin. Struct. Biol. 16, 94-101.
-
(2006)
Curr. Opin. Struct. Biol.
, vol.16
, pp. 94-101
-
-
Deechongkit, S.1
Jager, M.2
Nguyen, H.3
Powers, E.T.4
Gruebele, M.5
Kelly, J.W.6
-
16
-
-
0347130904
-
Multiple ensembles during trpzip unfolding probed by replica-exchange MD and experiment
-
Yang, W., Pitera, J., Swope, W., and Gruebele, M. (2004) Multiple ensembles during trpzip unfolding probed by replica-exchange MD and experiment. J. Mol. Biol. 336, 241-251.
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 241-251
-
-
Yang, W.1
Pitera, J.2
Swope, W.3
Gruebele, M.4
-
17
-
-
0346837918
-
β-Hairpin nucleation by Pro-Gly β-turns. Comparison of D-Pro-Gly and L-Pro-Gly sequences in an apolar octapeptide
-
Ragothama, S. R., Awasthi, S. K., and Balaram, P. (1998) β-Hairpin nucleation by Pro-Gly β-turns. Comparison of D-Pro-Gly and L-Pro-Gly sequences in an apolar octapeptide. J. Chem. Soc., Perkin Trans. 2, 137-143.
-
(1998)
J. Chem. Soc., Perkin Trans.
, vol.2
, pp. 137-143
-
-
Ragothama, S.R.1
Awasthi, S.K.2
Balaram, P.3
-
18
-
-
0037077578
-
Selective aromatic interactions in β-hairpin peptides
-
Tatko, C., and Waters, M. (2002) Selective aromatic interactions in β-hairpin peptides. J. Am. Chem. Soc. 124, 9372-9373.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 9372-9373
-
-
Tatko, C.1
Waters, M.2
-
19
-
-
0037438384
-
Stability of cyclic beta-hairpins: Asymmetric contributions from side chains of a hydrogen-bonded cross-strand residue pair
-
Russell, S. J., Blandl, T., Skelton, N. J., and Cochran, A. G. (2003) Stability of cyclic beta-hairpins: asymmetric contributions from side chains of a hydrogen-bonded cross-strand residue pair. J. Am. Chem. Soc. 125, 388-395.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 388-395
-
-
Russell, S.J.1
Blandl, T.2
Skelton, N.J.3
Cochran, A.G.4
-
20
-
-
17144408677
-
IR study of cross-strand coupling in a β-hairpin peptide using isotopic labels
-
Setnicka, V., Huang, R., Thomas, C. L., Etienne, M. A., Kubelka, J., Hammer, R. P., and Keiderling, T. A. (2005) IR study of cross-strand coupling in a β-hairpin peptide using isotopic labels. J. Am. Chem. Soc. 127, 4992-4993.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 4992-4993
-
-
Setnicka, V.1
Huang, R.2
Thomas, C.L.3
Etienne, M.A.4
Kubelka, J.5
Hammer, R.P.6
Keiderling, T.A.7
-
21
-
-
35948936905
-
Cross-strand coupling of a β-hairpin peptide stabilized with an Aib-Gly turn studied using isotope-edited IR spectroscopy
-
Huang, R., Setnicka, V., Etienne, M. A., Kim, J., Kubelka, J., Hammer, R. P., and Keiderling, T. A. (2007) Cross-strand coupling of a β-hairpin peptide stabilized with an Aib-Gly turn studied using isotope-edited IR spectroscopy. J. Am. Chem. Soc. 129, 13592-13603.
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 13592-13603
-
-
Huang, R.1
Setnicka, V.2
Etienne, M.A.3
Kim, J.4
Kubelka, J.5
Hammer, R.P.6
Keiderling, T.A.7
-
22
-
-
33644516904
-
Understanding the mechanism of β-hairpin folding via Φ-value analysis
-
DOI 10.1021/bi052039s
-
Du, D., Tucker, M. J., and Gai, F. (2006) Understanding the mechanism of β-hairpin folding via Φ-value analysis. Biochemistry 45, 2668-2678. (Pubitemid 43297326)
-
(2006)
Biochemistry
, vol.45
, Issue.8
, pp. 2668-2678
-
-
Du, D.1
Tucker, M.J.2
Gai, F.3
-
24
-
-
8644237364
-
Understanding the key factors that control the rate of β-hairpin folding
-
Du, D. G., Zhu, Y. J., Huang, C. Y., and Gai, F. (2004) Understanding the key factors that control the rate of β-hairpin folding. Proc. Natl. Acad. Sci. U.S.A. 101, 15915-15920.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 15915-15920
-
-
Du, D.G.1
Zhu, Y.J.2
Huang, C.Y.3
Gai, F.4
-
25
-
-
1642570290
-
Tryptophan zipper folding kinetics via molecular dynamics and temperature-jump spectroscopy
-
Snow, C. D., Qiu, L., Du, D., Gai, F., Hagen, S. J., and Pande, V. S. (2004) Tryptophan zipper folding kinetics via molecular dynamics and temperature-jump spectroscopy. Proc. Natl. Acad. Sci. U.S.A. 101, 4077-4082.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 4077-4082
-
-
Snow, C.D.1
Qiu, L.2
Du, D.3
Gai, F.4
Hagen, S.J.5
Pande, V.S.6
-
26
-
-
41449088536
-
Site-specific relaxation kinetics of a tryptophan zipper hairpin peptide using temperature-jump IR spectroscopy and isotopic labeling
-
Hauser, K., Krejtschi, C., Huang, R., Wu, L., and Keiderling, T. A. (2008) Site-specific relaxation kinetics of a tryptophan zipper hairpin peptide using temperature-jump IR spectroscopy and isotopic labeling. J. Am. Chem. Soc. 130, 2984-2992.
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 2984-2992
-
-
Hauser, K.1
Krejtschi, C.2
Huang, R.3
Wu, L.4
Keiderling, T.A.5
-
27
-
-
0036897848
-
Aromatic interactions in model systems
-
Waters, M. L. (2002) Aromatic interactions in model systems. Curr. Opin. Struct. Biol. 6, 736-741.
-
(2002)
Curr. Opin. Struct. Biol.
, vol.6
, pp. 736-741
-
-
Waters, M.L.1
-
28
-
-
9144222610
-
Aromatic interactions in peptides
-
Waters, M. L. (2004) Aromatic interactions in peptides. Biopolymers 76, 435-445.
-
(2004)
Biopolymers
, vol.76
, pp. 435-445
-
-
Waters, M.L.1
-
29
-
-
0033620414
-
Structural mimicry of canonical conformations in antibody hypervariable loops using cyclic peptides containing a heterochiral diproline template
-
Favre, M., Moehle, K., Jiang, L., Pfeiffer, B., and Robinson, J. A. (1999) Structural mimicry of canonical conformations in antibody hypervariable loops using cyclic peptides containing a heterochiral diproline template. J. Am. Chem. Soc. 121, 2679-2685.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 2679-2685
-
-
Favre, M.1
Moehle, K.2
Jiang, L.3
Pfeiffer, B.4
Robinson, J.A.5
-
30
-
-
3843137236
-
Expected and unexpected results from combined β-hairpin design elements
-
Dhanasekaran, M., Prakash, O., Gong, Y. X., and Baures, P. W. (2004) Expected and unexpected results from combined β-hairpin design elements. Org. Biomol. Chem. 2, 2071-2082.
-
(2004)
Org. Biomol. Chem.
, vol.2
, pp. 2071-2082
-
-
Dhanasekaran, M.1
Prakash, O.2
Gong, Y.X.3
Baures, P.W.4
-
31
-
-
66149086931
-
Very short peptides with stable folds: Building on the interrelationship of Trp/Trp, Trp/cation, and Trp/backbone-amide interaction geometries
-
Eidenschink, L., Kier, B. L., Huggins, K. N. L., and Andersen, N. H. (2009) Very short peptides with stable folds: Building on the interrelationship of Trp/Trp, Trp/cation, and Trp/backbone-amide interaction geometries. Proteins: Struct., Funct., Bioinf. 75, 308-322.
-
(2009)
Proteins: Struct., Funct., Bioinf.
, vol.75
, pp. 308-322
-
-
Eidenschink, L.1
Kier, B.L.2
Huggins, K.N.L.3
Andersen, N.H.4
-
32
-
-
16844371842
-
Tryptophan side chain electrostatic interactions determine edge-to-face vs parallel-displaced tryptophan side chain geometries in the designed β-hairpin "trpzip2"
-
Guvench, O., and Brooks, C. L.III (2005) Tryptophan side chain electrostatic interactions determine edge-to-face vs parallel-displaced tryptophan side chain geometries in the designed β-hairpin "trpzip2". J. Am. Chem. Soc. 127, 4668-4674.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 4668-4674
-
-
Guvench, O.1
Brooks III, C.L.2
-
33
-
-
65549132784
-
Disulfide bonds versus Trp⋯Trp pairs in irregular beta-hairpins: NMR structure of vammin loop 3-derived peptides as a case study
-
Mirassou, Y., Santiveri, C. M., Perez de Vega, J. M., Gonzalez- Muniz, R., and Jimenez, M. A. (2009) Disulfide bonds versus Trp⋯Trp pairs in irregular beta-hairpins: NMR structure of vammin loop 3-derived peptides as a case study. ChemBioChem 10, 902-910.
-
(2009)
ChemBioChem
, vol.10
, pp. 902-910
-
-
Mirassou, Y.1
Santiveri, C.M.2
De Perez Vega, J.M.3
Gonzalez- Muniz, R.4
Jimenez, M.A.5
-
34
-
-
34748874234
-
A cross-strand Trp-Trp pair stabilizes the hPin1 WW domain at the expense of function
-
DOI 10.1110/ps.072904107
-
Jager, M., Dendle, M., Fuller, A. A., and Kelly, J. W. (2007) A crossstrand Trp-Trp pair stabilizes the hPin1 WW domain at the expense of function. Protein Sci. 16, 2306-2313. (Pubitemid 47481667)
-
(2007)
Protein Science
, vol.16
, Issue.10
, pp. 2306-2313
-
-
Jager, M.1
Dendle, M.2
Fuller, A.A.3
Kelly, J.W.4
-
35
-
-
0037302324
-
Structural composition of {beta} I- And {beta}II- proteins
-
Sreerama, N., and Woody, R. W. (2003) Structural composition of {beta} I- and {beta}II- proteins. Protein Sci. 12, 384-388.
-
(2003)
Protein Sci.
, vol.12
, pp. 384-388
-
-
Sreerama, N.1
Woody, R.W.2
-
36
-
-
0001911969
-
Circular dichroism of peptides and proteins
-
(Nakanishi, K., Berova, N., and Woody, R. W., Eds.) Wiley-VCH, New York
-
Sreerama, N., and Woody, R. W. (2000) Circular dichroism of peptides and proteins, in Circular Dichroism Principles and Applications (Nakanishi, K., Berova, N., and Woody, R. W., Eds.) pp 601-620, Wiley-VCH, New York.
-
(2000)
Circular Dichroism Principles and Applications
, pp. 601-620
-
-
Sreerama, N.1
Woody, R.W.2
-
37
-
-
0026355426
-
Reassessment of the random coil conformation: Vibrational CD study of proline oligopeptides and related polypeptides
-
Dukor, R. K., and Keiderling, T. A. (1991) Reassessment of the random coil conformation: vibrational CD study of proline oligopeptides and related polypeptides. Biopolymers 31, 1747-1761.
-
(1991)
Biopolymers
, vol.31
, pp. 1747-1761
-
-
Dukor, R.K.1
Keiderling, T.A.2
-
38
-
-
0036400325
-
Is polyproline II a major backbone conformation in unfolded proteins?
-
DOI 10.1016/S0065-3233(02)62008-X
-
Shi, Z., Woody, R. W., and Kallenbach, N. R. (2002) Is polyproline II a major backbone conformation in unfolded proteins? Adv. Protein Chem. 62, 163-240. (Pubitemid 35204871)
-
(2002)
Advances in Protein Chemistry
, vol.62
, pp. 163-240
-
-
Shi, Z.1
Woody, R.W.2
Kallenbach, N.R.3
-
39
-
-
0041413204
-
Fourier transform infrared spectroscopic studies of peptides: Potentials and pitfalls
-
Infrared Analysis of Peptides and Proteins: Principles and Applications, (Ram Singh, B., Ed.) American Chemical Society, Washington, DC
-
Haris, P. I. (2000) Fourier transform infrared spectroscopic studies of peptides: potentials and pitfalls, in Infrared Analysis of Peptides and Proteins: Principles and Applications, ACS Symp. Ser. (Ram Singh, B., Ed.) pp 54-95, American Chemical Society, Washington, DC.
-
(2000)
ACS Symp. Ser.
, pp. 54-95
-
-
Haris, P.I.1
-
40
-
-
0035814332
-
Differentiation of β-sheet forming structures: Ab initio based simulations of IR absorption and vibrational CD for model peptide and protein β-sheets
-
Kubelka, J., and Keiderling, T. A. (2001) Differentiation of β-sheet forming structures: ab initio based simulations of IR absorption and vibrational CD for model peptide and protein β-sheets. J. Am. Chem. Soc. 123, 12048-12058.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 12048-12058
-
-
Kubelka, J.1
Keiderling, T.A.2
-
41
-
-
1542379588
-
-
(Goodman, M., and Herman, G., Eds.) Verlag, New York
-
Keiderling, T. A., and Silva, R. A. G. D. (2002) in Synthesis of Peptides and Peptidomimetics (Goodman, M., and Herman, G., Eds.) pp 715-738, Verlag, New York.
-
(2002)
Synthesis of Peptides and Peptidomimetics
, pp. 715-738
-
-
Keiderling, T.A.1
Silva, R.A.G.D.2
-
42
-
-
0015904265
-
Intensities and other spectral parameters of infrared amide bands of polypeptides in the beta and random forms
-
Chirgadze, Y. N., Shetopalov, B. V., and Venyaminov, S. Y. (1973) Intensities and other spectral parameters of infrared amide bands of polypeptides in the beta and random forms. Biopolymers 12, 1337-1351.
-
(1973)
Biopolymers
, vol.12
, pp. 1337-1351
-
-
Chirgadze, Y.N.1
Shetopalov, B.V.2
Venyaminov, S.Y.3
-
43
-
-
61749093139
-
Relationship between hydrophobic interactions and secondary structure stability for Trpzip β-hairpin peptides
-
Takekiyo, T., Wu, L., Yoshimura, Y., Shimizu, A., and Keiderling, T. A. (2009) Relationship between hydrophobic interactions and secondary structure stability for Trpzip β-hairpin peptides. Biochemistry 48, 1543-1552.
-
(2009)
Biochemistry
, vol.48
, pp. 1543-1552
-
-
Takekiyo, T.1
Wu, L.2
Yoshimura, Y.3
Shimizu, A.4
Keiderling, T.A.5
-
44
-
-
0037173098
-
Correction
-
Cochran, A. G., Skelton, N. J., and Starovasnik, M. A. (2002) Correction. Proc. Natl. Acad. Sci. U.S.A. 99, 9081-9082.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 9081-9082
-
-
Cochran, A.G.1
Skelton, N.J.2
Starovasnik, M.A.3
-
45
-
-
79960698472
-
Water suppression that works: Excitation sculpting using arbitrary waveforms and pulsed field gradients
-
Hwang, T., and Shaka, A. J. (1995) Water suppression that works: excitation sculpting using arbitrary waveforms and pulsed field gradients. J. Magn. Reson. 112A, 275-279.
-
(1995)
J. Magn. Reson.
, vol.112
, pp. 275-279
-
-
Hwang, T.1
Shaka, A.J.2
-
46
-
-
0029400480
-
NMRRipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) NMRRipe: a multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6, 277-293.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
47
-
-
34249765651
-
NMR View: A computer program for the visualization and analysis of NMR data
-
Johnson, B. A., and Blevins, R. A. (1994) NMR View: A computer program for the visualization and analysis of NMR data. J. Biomol. NMR 4, 604-613.
-
(1994)
J. Biomol. NMR
, vol.4
, pp. 604-613
-
-
Johnson, B.A.1
Blevins, R.A.2
-
48
-
-
0031576336
-
Torsion angle dynamics for NMR structure calculation with the new program DYANA
-
Guntert, P., Mumenthaler, C., and Wuthrich, K. (1997) Torsion angle dynamics for NMR structure calculation with the new program DYANA. J. Mol. Biol. 273, 283-298.
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 283-298
-
-
Guntert, P.1
Mumenthaler, C.2
Wuthrich, K.3
-
49
-
-
29444458401
-
Structural basis for cooperative transcription factor binding to the CBP coactivator
-
DeGuzman, R. N., Goto, N. K., Dyson, H. J., and Wright, P. E. (2006) Structural basis for cooperative transcription factor binding to the CBP coactivator. J. Mol. Biol. 355, 1005-1013.
-
(2006)
J. Mol. Biol.
, vol.355
, pp. 1005-1013
-
-
DeGuzman, R.N.1
Goto, N.K.2
Dyson, H.J.3
Wright, P.E.4
-
50
-
-
33748518255
-
Comparison of multiple amber force fields and development of improved protein backbone parameters
-
DOI 10.1002/prot.21123
-
Hornak, V., Abel, R., Okur, A., Strockbine, B., Roitberg, A., and Simmerling, C. (2006) Comparison of multiple Amber force fields and development of improved protein backbone parameters. Proteins: Struct., Funct., Bioinf. 65, 712-725. (Pubitemid 44583220)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.65
, Issue.3
, pp. 712-725
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
Simmerling, C.6
-
51
-
-
0000865993
-
Anew analysis of proton chemical shifts in proteins
-
Osapay, K., and Case, D. A. (1991)Anew analysis of proton chemical shifts in proteins. J. Am. Chem. Soc. 113, 9436-9444.
-
(1991)
J. Am. Chem. Soc.
, vol.113
, pp. 9436-9444
-
-
Osapay, K.1
Case, D.A.2
-
52
-
-
0030339738
-
AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR
-
Laskowski, R. A., Rullmann, J. A. C., MacArthur, M. W., Kaptein, R., and Thornton, J. M. (1999) AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR. J. Biomol. NMR 8, 477-486. (Pubitemid 126706801)
-
(1996)
Journal of Biomolecular NMR
, vol.8
, Issue.4
, pp. 477-486
-
-
Laskowski, R.A.1
Rullmann, J.A.C.2
MacArthur, M.W.3
Kaptein, R.4
Thornton, J.M.5
-
53
-
-
0026597879
-
The chemical shift index: A fast and simple method for the assignment of protein secondary structure through NMR spectroscopy
-
Wishart, D. S., Sykes, B. D., and Richards, F. M. (1992) The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy. Biochemistry 31, 1647-1651.
-
(1992)
Biochemistry
, vol.31
, pp. 1647-1651
-
-
Wishart, D.S.1
Sykes, B.D.2
Richards, F.M.3
-
54
-
-
0026410969
-
Relationship between nuclear magnetic resonance chemical shift and protein secondary structure
-
Wishart, D. S., Sykes, B. D., and Richards, F. M. (1991) Relationship between nuclear magnetic resonance chemical shift and protein secondary structure. J. Mol. Biol. 222, 311-333.
-
(1991)
J. Mol. Biol.
, vol.222
, pp. 311-333
-
-
Wishart, D.S.1
Sykes, B.D.2
Richards, F.M.3
-
55
-
-
70350434061
-
TDDFT modeling of the circular dichroism of coupled aromatic residues for a tryptohan zipper peptide
-
in press
-
Roy, A., Bour, P., and Keiderling, T. A. (2009) TDDFT modeling of the circular dichroism of coupled aromatic residues for a tryptohan zipper peptide. Chirality (in press).
-
(2009)
Chirality
-
-
Roy, A.1
Bour, P.2
Keiderling, T.A.3
-
56
-
-
34948866227
-
Evaluation of a carbohydrate-π interaction in a peptide model system
-
Kiehna, S. E., Laughrey, Z. R., and Waters, M. L. (2007) Evaluation of a carbohydrate-π interaction in a peptide model system. Chem. Commun., 4026-4028.
-
(2007)
Chem. Commun.
, pp. 4026-4028
-
-
Kiehna, S.E.1
Laughrey, Z.R.2
Waters, M.L.3
-
57
-
-
0142179050
-
The geometry and efficacy of cation-π interactions in diagonal positions of a designed β-hairpin
-
Tatko, C. D., and Waters, M. L. (2003) The geometry and efficacy of cation-π interactions in diagonal positions of a designed β-hairpin. Protein Sci. 12, 2443-2452.
-
(2003)
Protein Sci.
, vol.12
, pp. 2443-2452
-
-
Tatko, C.D.1
Waters, M.L.2
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