-
1
-
-
70350504453
-
The DNA-damage response in human biology and disease
-
S.P. Jackson, and J. Bartek The DNA-damage response in human biology and disease Nature 461 2009 1071 1078
-
(2009)
Nature
, vol.461
, pp. 1071-1078
-
-
Jackson, S.P.1
Bartek, J.2
-
2
-
-
65349103899
-
Blinded by the light: The growing complexity of p53
-
K.H. Vousden, and C. Prives Blinded by the light: the growing complexity of p53 Cell 137 2009 413 431
-
(2009)
Cell
, vol.137
, pp. 413-431
-
-
Vousden, K.H.1
Prives, C.2
-
3
-
-
84857443702
-
The p53 network: Cellular and systemic DNA damage responses in aging and cancer
-
H.C. Reinhardt, and B. Schumacher The p53 network: cellular and systemic DNA damage responses in aging and cancer Trends Genet. 28 2012 128 136
-
(2012)
Trends Genet.
, vol.28
, pp. 128-136
-
-
Reinhardt, H.C.1
Schumacher, B.2
-
5
-
-
0842332406
-
Dynamics of the p53-Mdm2 feedback loop in individual cells
-
G. Lahav, N. Rosenfeld, A. Sigal, N. Geva-Zatorsky, and A.J. Levine et al. Dynamics of the p53-Mdm2 feedback loop in individual cells Nat. Genet. 36 2004 147 150
-
(2004)
Nat. Genet.
, vol.36
, pp. 147-150
-
-
Lahav, G.1
Rosenfeld, N.2
Sigal, A.3
Geva-Zatorsky, N.4
Levine, A.J.5
-
6
-
-
33745451921
-
Oscillations and variability in the p53 system
-
N. Geva-Zatorsky, N. Rosenfeld, S. Itzkovitz, R. Milo, and A. Sigal et al. Oscillations and variability in the p53 system Mol. Syst. Biol. 2 2006 0033
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 0033
-
-
Geva-Zatorsky, N.1
Rosenfeld, N.2
Itzkovitz, S.3
Milo, R.4
Sigal, A.5
-
8
-
-
42949171936
-
Recurrent initiation: A mechanism for triggering p53 pulses in response to DNA damage
-
E. Batchelor, C.S. Mock, I. Bhan, A. Loewer, and G. Lahav Recurrent initiation: a mechanism for triggering p53 pulses in response to DNA damage Mol. Cell 30 2008 277 289
-
(2008)
Mol. Cell
, vol.30
, pp. 277-289
-
-
Batchelor, E.1
Mock, C.S.2
Bhan, I.3
Loewer, A.4
Lahav, G.5
-
9
-
-
67651202705
-
Modeling the role of p53 pulses in DNA damage- induced cell death decision
-
T. Sun, C. Chen, Y. Wu, S. Zhang, and J. Cui et al. Modeling the role of p53 pulses in DNA damage- induced cell death decision BMC Bioinformatics 10 2009 190
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 190
-
-
Sun, T.1
Chen, C.2
Wu, Y.3
Zhang, S.4
Cui, J.5
-
11
-
-
67349091738
-
The ups and downs of p53: Understanding protein dynamics in single cells
-
E. Batchelor, A. Loewer, and G. Lahav The ups and downs of p53: understanding protein dynamics in single cells Nat. Rev. Cancer 9 2009 371 377
-
(2009)
Nat. Rev. Cancer
, vol.9
, pp. 371-377
-
-
Batchelor, E.1
Loewer, A.2
Lahav, G.3
-
12
-
-
79751531809
-
Mathematical modeling of cell cycle regulation in response to DNA damage: Exploring mechanisms of cell-fate determination
-
K. Iwamoto, H. Hamada, Y. Eguchi, and M. Okamoto Mathematical modeling of cell cycle regulation in response to DNA damage: exploring mechanisms of cell-fate determination Biosystems 103 2011 384 391
-
(2011)
Biosystems
, vol.103
, pp. 384-391
-
-
Iwamoto, K.1
Hamada, H.2
Eguchi, Y.3
Okamoto, M.4
-
13
-
-
68949136900
-
Computational analysis of dynamical responses to the intrinsic pathway of programmed cell death
-
T. Zhang, P. Brazhnik, and J.J. Tyson Computational analysis of dynamical responses to the intrinsic pathway of programmed cell death Biophys. J. 97 2009 415 434
-
(2009)
Biophys. J.
, vol.97
, pp. 415-434
-
-
Zhang, T.1
Brazhnik, P.2
Tyson, J.J.3
-
14
-
-
77957767333
-
Coordination between cell cycle progression and cell fate decision by the p53 and E2F1 pathways in response to DNA damage
-
X.P. Zhang, F. Liu, and W. Wang Coordination between cell cycle progression and cell fate decision by the p53 and E2F1 pathways in response to DNA damage J. Biol. Chem. 285 2010 31571 31580
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 31571-31580
-
-
Zhang, X.P.1
Liu, F.2
Wang, W.3
-
15
-
-
79959343390
-
Two-phase dynamics of p53 in the DNA damage response
-
X.P. Zhang, F. Liu, and W. Wang Two-phase dynamics of p53 in the DNA damage response Proc. Natl. Acad. Sci. USA 108 2011 8990 8995
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 8990-8995
-
-
Zhang, X.P.1
Liu, F.2
Wang, W.3
-
16
-
-
33846594408
-
Exploring mechanisms of the DNA-damage response: P53 pulses and their possible relevance to apoptosis
-
T. Zhang, P. Brazhnik, and J.J. Tyson Exploring mechanisms of the DNA-damage response: p53 pulses and their possible relevance to apoptosis Cell Cycle 6 2007 85 94
-
(2007)
Cell Cycle
, vol.6
, pp. 85-94
-
-
Zhang, T.1
Brazhnik, P.2
Tyson, J.J.3
-
18
-
-
33746685694
-
Akt versus p53 in a network of oncogenes and tumor suppressor genes regulating cell survival and death
-
K.B. Wee, and B.D. Aguda Akt versus p53 in a network of oncogenes and tumor suppressor genes regulating cell survival and death Biophys. J. 91 2006 857 865
-
(2006)
Biophys. J.
, vol.91
, pp. 857-865
-
-
Wee, K.B.1
Aguda, B.D.2
-
19
-
-
84887212582
-
Oscillations of the p53-Akt network: Implications on cell survival and death
-
K.B. Wee, U. Surana, and B.D. Aguda Oscillations of the p53-Akt network: implications on cell survival and death PLoS One 4 2009 e4407
-
(2009)
PLoS One
, vol.4
, pp. 4407
-
-
Wee, K.B.1
Surana, U.2
Aguda, B.D.3
-
20
-
-
77957375431
-
Coordination of the nuclear and cytoplasmic activities of p53 in response to DNA damage
-
T. Pu, X.P. Zhang, F. Liu, and W. Wang Coordination of the nuclear and cytoplasmic activities of p53 in response to DNA damage Biophys. J. 99 2010 1696 1705
-
(2010)
Biophys. J.
, vol.99
, pp. 1696-1705
-
-
Pu, T.1
Zhang, X.P.2
Liu, F.3
Wang, W.4
-
21
-
-
84879076495
-
DNA damage strength modulates a bimodal switch of p53 dynamics for cell-fate control
-
X. Chen, J. Chen, S. Gan, H. Guan, and Y. Zhou et al. DNA damage strength modulates a bimodal switch of p53 dynamics for cell-fate control BMC Biol. 11 2013 73
-
(2013)
BMC Biol.
, vol.11
, pp. 73
-
-
Chen, X.1
Chen, J.2
Gan, S.3
Guan, H.4
Zhou, Y.5
-
22
-
-
84874948475
-
A threshold mechanism mediates p53 cell fate decision between growth arrest and apoptosis
-
M. Kracikova, G. Akiri, A. George, R. Sachidanandam, and S.A. Aaronson A threshold mechanism mediates p53 cell fate decision between growth arrest and apoptosis Cell Death Differ. 20 2013 576 588
-
(2013)
Cell Death Differ.
, vol.20
, pp. 576-588
-
-
Kracikova, M.1
Akiri, G.2
George, A.3
Sachidanandam, R.4
Aaronson, S.A.5
-
23
-
-
24944516000
-
RNA interference and potential therapeutic applications of short interfering RNAs
-
T.C. Karagiannis, and A. El-Osta RNA interference and potential therapeutic applications of short interfering RNAs Cancer Gene Ther. 12 2005 787 795
-
(2005)
Cancer Gene Ther.
, vol.12
, pp. 787-795
-
-
Karagiannis, T.C.1
El-Osta, A.2
-
24
-
-
33847276654
-
Monoubiquitylation promotes mitochondrial p53 translocation
-
N.D. Marchenko, S. Wolff, S. Erster, K. Becker, and U.M. Moll Monoubiquitylation promotes mitochondrial p53 translocation EMBO J. 26 2007 923 934
-
(2007)
EMBO J.
, vol.26
, pp. 923-934
-
-
Marchenko, N.D.1
Wolff, S.2
Erster, S.3
Becker, K.4
Moll, U.M.5
-
25
-
-
77952955237
-
From structure to dynamics: Frequency tuning in the p53-Mdm2 network. II Differential and stochastic approaches
-
D.A. Ouattara, W. Abou-Jaoude, and M. Kaufman From structure to dynamics: frequency tuning in the p53-Mdm2 network. II Differential and stochastic approaches J. Theor. Biol. 264 2010 1177 1189
-
(2010)
J. Theor. Biol.
, vol.264
, pp. 1177-1189
-
-
Ouattara, D.A.1
Abou-Jaoude, W.2
Kaufman, M.3
-
26
-
-
67349272002
-
From structure to dynamics: Frequency tuning in the p53-Mdm2 network I. Logical approach
-
W. Abou-Jaoude, D.A. Ouattara, and M. Kaufman From structure to dynamics: frequency tuning in the p53-Mdm2 network I. Logical approach J. Theor. Biol. 258 2009 561 577
-
(2009)
J. Theor. Biol.
, vol.258
, pp. 561-577
-
-
Abou-Jaoude, W.1
Ouattara, D.A.2
Kaufman, M.3
-
27
-
-
53149144701
-
Explaining oscillations and variability in the p53-Mdm2 system
-
C.J. Proctor, and D.A. Gray Explaining oscillations and variability in the p53-Mdm2 system BMC Syst. Biol. 2 2008 75
-
(2008)
BMC Syst. Biol.
, vol.2
, pp. 75
-
-
Proctor, C.J.1
Gray, D.A.2
-
28
-
-
79951986860
-
A theoretical exploration of birhythmicity in the p53-Mdm2 network
-
W. Abou-Jaoude, M. Chaves, and J.L. Gouze A theoretical exploration of birhythmicity in the p53-Mdm2 network PLoS One 6 2011 e17075
-
(2011)
PLoS One
, vol.6
, pp. 17075
-
-
Abou-Jaoude, W.1
Chaves, M.2
Gouze, J.L.3
-
29
-
-
77954398160
-
Stress-specific response of the p53-Mdm2 feedback loop
-
A. Hunziker, M.H. Jensen, and S. Krishna Stress-specific response of the p53-Mdm2 feedback loop BMC Syst. Biol. 4 2010 94
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. 94
-
-
Hunziker, A.1
Jensen, M.H.2
Krishna, S.3
-
30
-
-
0043180477
-
Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays
-
N.A. Monk Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays Curr. Biol. 13 2003 1409 1413
-
(2003)
Curr. Biol.
, vol.13
, pp. 1409-1413
-
-
Monk, N.A.1
-
31
-
-
84862270480
-
P53 dynamics control cell fate
-
J.E. Purvis, K.W. Karhohs, C. Mock, E. Batchelor, and A. Loewer et al. P53 dynamics control cell fate Science 336 2012 1440 1444
-
(2012)
Science
, vol.336
, pp. 1440-1444
-
-
Purvis, J.E.1
Karhohs, K.W.2
Mock, C.3
Batchelor, E.4
Loewer, A.5
-
32
-
-
84855982133
-
The p53 mRNA-Mdm2 interaction controls Mdm2 nuclear trafficking and is required for p53 activation following DNA damage
-
M. Gajjar, M.M. Candeias, L. Malbert-Colas, A. Mazars, and J. Fujita et al. The p53 mRNA-Mdm2 interaction controls Mdm2 nuclear trafficking and is required for p53 activation following DNA damage Cancer Cell 21 2012 25 35
-
(2012)
Cancer Cell
, vol.21
, pp. 25-35
-
-
Gajjar, M.1
Candeias, M.M.2
Malbert-Colas, L.3
Mazars, A.4
Fujita, J.5
-
33
-
-
84855934856
-
Mdm2's dilemma: To degrade or to translate p53?
-
P.J. Hamard, and J.J. Manfredi Mdm2's dilemma: to degrade or to translate p53? Cancer Cell 21 2012 3 5
-
(2012)
Cancer Cell
, vol.21
, pp. 3-5
-
-
Hamard, P.J.1
Manfredi, J.J.2
-
34
-
-
84873055344
-
MDM2, MDMX and p53 in oncogenesis and cancer therapy
-
M. Wade, Y.C. Li, and G.M. Wahl MDM2, MDMX and p53 in oncogenesis and cancer therapy Nat. Rev. Cancer 13 2013 83 96
-
(2013)
Nat. Rev. Cancer
, vol.13
, pp. 83-96
-
-
Wade, M.1
Li, Y.C.2
Wahl, G.M.3
-
35
-
-
0037376655
-
Sniffers, buzzers, toggles and blinkers: Dynamics of regulatory and signaling pathways in the cell
-
J.J. Tyson, K.C. Chen, and B. Novak Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell Curr. Opin. Cell Biol. 15 2003 221 231
-
(2003)
Curr. Opin. Cell Biol.
, vol.15
, pp. 221-231
-
-
Tyson, J.J.1
Chen, K.C.2
Novak, B.3
-
36
-
-
2342567852
-
Accelerated MDM2 auto-degradation induced by DNA-damage kinases is required for p53 activation
-
J.M. Stommel, and G.M. Wahl Accelerated MDM2 auto-degradation induced by DNA-damage kinases is required for p53 activation EMBO J. 23 2004 1547 1556
-
(2004)
EMBO J.
, vol.23
, pp. 1547-1556
-
-
Stommel, J.M.1
Wahl, G.M.2
-
37
-
-
79952638264
-
Cellular decision making and biological noise: From microbes to mammals
-
G. Balazsi, A. van Oudenaarden, and J.J. Collins Cellular decision making and biological noise: from microbes to mammals Cell 144 2011 910 925
-
(2011)
Cell
, vol.144
, pp. 910-925
-
-
Balazsi, G.1
Van Oudenaarden, A.2
Collins, J.J.3
-
38
-
-
0039483059
-
Numerical bifurcation analysis of delay differential equations using DDE-BIFTOOL
-
K. Engelborghs, T. Luzyanina, and D. Roose Numerical bifurcation analysis of delay differential equations using DDE-BIFTOOL ACM Trans. Math. Software 28 2002 1 21
-
(2002)
ACM Trans. Math. Software
, vol.28
, pp. 1-21
-
-
Engelborghs, K.1
Luzyanina, T.2
Roose, D.3
-
39
-
-
81155128140
-
Modeling the basal dynamics of p53 system
-
T. Sun, W. Yang, J. Liu, and P. Shen Modeling the basal dynamics of p53 system PLoS One 6 2011 e27882
-
(2011)
PLoS One
, vol.6
, pp. 27882
-
-
Sun, T.1
Yang, W.2
Liu, J.3
Shen, P.4
-
40
-
-
33847028014
-
Induction of ATM activation, histone H2AX phosphorylation and apoptosis by etoposide: Relation to cell cycle phase
-
T. Tanaka, H.D. Halicka, F. Traganos, K. Seiter, and Z. Darzynkiewicz Induction of ATM activation, histone H2AX phosphorylation and apoptosis by etoposide: relation to cell cycle phase Cell Cycle 6 2007 371 376
-
(2007)
Cell Cycle
, vol.6
, pp. 371-376
-
-
Tanaka, T.1
Halicka, H.D.2
Traganos, F.3
Seiter, K.4
Darzynkiewicz, Z.5
-
41
-
-
0034940879
-
X-irradiation induces up-regulation of ATM gene expression in wild-type lymphoblastoid cell lines, but not in their heterozygous or homozygous ataxia-telangiectasia counterparts
-
Y. Hirai, T. Hayashi, Y. Kubo, Y. Hoki, and I. Arita et al. X-irradiation induces up-regulation of ATM gene expression in wild-type lymphoblastoid cell lines, but not in their heterozygous or homozygous ataxia-telangiectasia counterparts Jpn. J. Cancer Res. 92 2001 710 717
-
(2001)
Jpn. J. Cancer Res.
, vol.92
, pp. 710-717
-
-
Hirai, Y.1
Hayashi, T.2
Kubo, Y.3
Hoki, Y.4
Arita, I.5
-
42
-
-
0034818446
-
Post-translational modifications and activation of p53 by genotoxic stresses
-
E. Appella, and C.W. Anderson Post-translational modifications and activation of p53 by genotoxic stresses Eur. J. Biochem. 268 2001 2764 2772
-
(2001)
Eur. J. Biochem.
, vol.268
, pp. 2764-2772
-
-
Appella, E.1
Anderson, C.W.2
-
43
-
-
84863756423
-
Surf the post-translational modification network of p53 regulation
-
B. Gu, and W.G. Zhu Surf the post-translational modification network of p53 regulation Int. J. Biol. Sci. 8 2012 672 684
-
(2012)
Int. J. Biol. Sci.
, vol.8
, pp. 672-684
-
-
Gu, B.1
Zhu, W.G.2
-
44
-
-
0346455772
-
Posttransiational modification of MDM2
-
D.W. Meek, and U. Knippschild Posttransiational modification of MDM2 Mol. Cancer Res. 1 2003 1017 1026
-
(2003)
Mol. Cancer Res.
, vol.1
, pp. 1017-1026
-
-
Meek, D.W.1
Knippschild, U.2
-
45
-
-
55949099028
-
Oscillations by the p53-Mdm2 feedback loop
-
G. Lahav Oscillations by the p53-Mdm2 feedback loop Adv. Exp. Med. Biol. 641 2008 28 38
-
(2008)
Adv. Exp. Med. Biol.
, vol.641
, pp. 28-38
-
-
Lahav, G.1
-
46
-
-
22944469465
-
Binomial distribution based tau-leap accelerated stochastic simulation
-
A. Chatterjee, D.G. Vlachos, and M.A. Katsoulakis Binomial distribution based tau-leap accelerated stochastic simulation J. Chem. Phys. 122 2005 024112
-
(2005)
J. Chem. Phys.
, vol.122
, pp. 024112
-
-
Chatterjee, A.1
Vlachos, D.G.2
Katsoulakis, M.A.3
-
47
-
-
44449148341
-
Generalized binomial tau-leap method for biochemical kinetics incorporating both delay and intrinsic noise
-
A. Leier, T.T. Marquez-Lago, and K. Burrage Generalized binomial tau-leap method for biochemical kinetics incorporating both delay and intrinsic noise J. Chem. Phys. 128 2008
-
(2008)
J. Chem. Phys.
, vol.128
-
-
Leier, A.1
Marquez-Lago, T.T.2
Burrage, K.3
-
48
-
-
33748994704
-
Stochastic mRNA synthesis in mammalian cells
-
A. Raj, C.S. Peskin, D. Tranchina, D.Y. Vargas, and S. Tyagi Stochastic mRNA synthesis in mammalian cells PLoS Biol. 4 2006 1707 1719
-
(2006)
PLoS Biol.
, vol.4
, pp. 1707-1719
-
-
Raj, A.1
Peskin, C.S.2
Tranchina, D.3
Vargas, D.Y.4
Tyagi, S.5
-
49
-
-
84878648282
-
Mechanisms that enhance sustainability of p53 pulses
-
J.K. Kim, and T.L. Jackson Mechanisms that enhance sustainability of p53 pulses PLoS One 8 2013 e65242
-
(2013)
PLoS One
, vol.8
, pp. 65242
-
-
Kim, J.K.1
Jackson, T.L.2
|