-
1
-
-
0031171212
-
Clostridium botulinum and the safety of refrigerated processed foods of extended durability
-
Peck MW (1997) Clostridium botulinum and the safety of refrigerated processed foods of extended durability. Trends Food Sci Technol 8: 186-192.
-
(1997)
Trends Food Sci Technol
, vol.8
, pp. 186-192
-
-
Peck, M.W.1
-
2
-
-
33645451899
-
Hazard and control of group II (non-proteolytic) Clostridium botulinum in modern food processing
-
Lindström M, Kiviniemi K, Korkeala H (2006) Hazard and control of group II (non-proteolytic) Clostridium botulinum in modern food processing. Int J Food Microbiol 108: 92-104.
-
(2006)
Int J Food Microbiol
, vol.108
, pp. 92-104
-
-
Lindström, M.1
Kiviniemi, K.2
Korkeala, H.3
-
4
-
-
78149428964
-
Short- and long-term biomarkers for bacterial robustness: A framework for quantifying correlations between cellular indicators and adaptive behavior
-
den Besten HM, Arvind A, Gaballo HM, Moezelaar R, Zwietering MH, et al. (2010) Short- and long-term biomarkers for bacterial robustness: a framework for quantifying correlations between cellular indicators and adaptive behavior. PLoS ONE 5: e13746.
-
(2010)
PLoS ONE
, vol.5
-
-
Den Besten, H.M.1
Arvind, A.2
Gaballo, H.M.3
Moezelaar, R.4
Zwietering, M.H.5
-
5
-
-
1942467448
-
Recent developments in bacterial cold-shock response
-
Phadtare S (2004) Recent developments in bacterial cold-shock response. Curr Issues Mol Biol 6: 125-136.
-
(2004)
Curr Issues Mol Biol
, vol.6
, pp. 125-136
-
-
Phadtare, S.1
-
6
-
-
0036855530
-
Genome-wide transcriptional profiling of the Bacillus subtilis cold-shock response
-
Kaan T, Homuth G, Mader U, Bandow J, Schweder T (2002) Genome-wide transcriptional profiling of the Bacillus subtilis cold-shock response. Microbiology 148: 3441-3455. (Pubitemid 35414455)
-
(2002)
Microbiology
, vol.148
, Issue.11
, pp. 3441-3455
-
-
Kaan, T.1
Homuth, G.2
Mader, U.3
Bandow, J.4
Scheweder, T.5
-
7
-
-
0036844248
-
Genomewide transcriptional analysis of the cold shock response in Bacillus subtilis
-
DOI 10.1128/JB.184.22.6395-6402.2002
-
Beckering CL, Steil L, Weber MHW, Volker U, Marahiel MA (2002) Genomewide transcriptional analysis of the cold shock response in Bacillus subtilis. J Bacteriol 184: 6395-6402. (Pubitemid 35265923)
-
(2002)
Journal of Bacteriology
, vol.184
, Issue.22
, pp. 6395-6402
-
-
Beckering, C.L.1
Steil, L.2
Weber, M.H.W.3
Volker, U.4
Marahiel, M.A.5
-
8
-
-
79953050771
-
cspB encodes a major cold shock protein in Clostridium botulinum ATCC 3502
-
Söderholm H, Lindström M, Somervuo P, Heap J, Minton NP, et al. (2011) cspB encodes a major cold shock protein in Clostridium botulinum ATCC 3502. Int J Food Microbiol 146: 23-30.
-
(2011)
Int J Food Microbiol
, vol.146
, pp. 23-30
-
-
Söderholm, H.1
Lindström, M.2
Somervuo, P.3
Heap, J.4
Minton, N.P.5
-
9
-
-
84866163783
-
Involvement of two-component system CBO0366/CBO0365 in the cold shock response and growth of group I (proteolytic) Clostridium botulinum ATCC 3502 at low temperatures
-
Lindström M, Dahlsten E, Söderholm H, Selby K, Somervuo P, et al. (2012) Involvement of two-component system CBO0366/CBO0365 in the cold shock response and growth of group I (proteolytic) Clostridium botulinum ATCC 3502 at low temperatures. Appl Environ Microbiol 78: 5466-5470.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 5466-5470
-
-
Lindström, M.1
Dahlsten, E.2
Söderholm, H.3
Selby, K.4
Somervuo, P.5
-
10
-
-
84885173068
-
The two-component system CBO2306/CBO2307 is important for cold adaptation of Clostridium botulinum ATCC 3502
-
Derman Y, Isokallio M, Lindström M, Korkeala H (2013) The two-component system CBO2306/CBO2307 is important for cold adaptation of Clostridium botulinum ATCC 3502. Int J Food Microbiol 167: 87-91.
-
(2013)
Int J Food Microbiol
, vol.167
, pp. 87-91
-
-
Derman, Y.1
Isokallio, M.2
Lindström, M.3
Korkeala, H.4
-
11
-
-
84878564424
-
Alternative sigma factor SigK has a role in stress tolerance of group I Clostridium botulinum strain ATCC 3502
-
Dahlsten E, Kirk D, Lindström M, Korkeala H (2013) Alternative sigma factor SigK has a role in stress tolerance of group I Clostridium botulinum strain ATCC 3502. Appl Environ Microbiol 79: 3867-3869.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 3867-3869
-
-
Dahlsten, E.1
Kirk, D.2
Lindström, M.3
Korkeala, H.4
-
12
-
-
34347395377
-
Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes
-
DOI 10.1101/gr.6282807
-
Sebaihia M, Peck MW, Minton NP, Thomson NR, Holden MT, et al. (2007) Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes. Genome Res 17: 1082-1092. (Pubitemid 47026355)
-
(2007)
Genome Research
, vol.17
, Issue.7
, pp. 1082-1092
-
-
Sebaihia, M.1
Peck, M.W.2
Minton, N.P.3
Thomson, N.R.4
Holden, M.T.G.5
Mitchell, W.J.6
Carter, A.T.7
Bentley, S.D.8
Mason, D.R.9
Crossman, L.10
Paul, C.J.11
Ivens, A.12
Wells-Bennik, M.H.J.13
Davis, I.J.14
Cerdeno-Tarraga, A.M.15
Churcher, C.16
Quail, M.A.17
Chillingworth, T.18
Feltwell, T.19
Fraser, A.20
Goodhead, I.21
Hance, Z.22
Jagels, K.23
Larke, N.24
Maddison, M.25
Moule, S.26
Mungall, K.27
Norbertczak, H.28
Rabbinowitsch, E.29
Sanders, M.30
Simmonds, M.31
White, B.32
Whithead, S.33
Parkhill, J.34
more..
-
13
-
-
84891129963
-
The cold-induced two-component system CBO0366/CBO0365 regulates metabolic pathways with novel roles in cold tolerance of group I Clostridium botulinum ATCC 3502
-
Dahlsten E, Zhang Z, Somervuo P, Minton NP, Lindström M, et al. (2014) The cold-induced two-component system CBO0366/CBO0365 regulates metabolic pathways with novel roles in cold tolerance of group I Clostridium botulinum ATCC 3502. Appl Environ Microbiol 80: 306-319.
-
(2014)
Appl Environ Microbiol
, vol.80
, pp. 306-319
-
-
Dahlsten, E.1
Zhang, Z.2
Somervuo, P.3
Minton, N.P.4
Lindström, M.5
-
14
-
-
0028157327
-
Glycine betaine confers enhanced osmotolerance and cryotolerance on Listeria monocytogenes
-
Ko R, Smith LT, Smith GM (1994) Glycine betaine confers enhanced osmotolerance and cryotolerance on Listeria monocytogenes. J Bacteriol 176: 426-431. (Pubitemid 24034061)
-
(1994)
Journal of Bacteriology
, vol.176
, Issue.2
, pp. 426-431
-
-
Ko, R.1
Smith, L.T.2
Smith, G.M.3
-
15
-
-
0036276494
-
Identification of OpuC as a chill-activated and osmotically activated carnitine transporter in Listeria monocytogenes
-
DOI 10.1128/AEM.68.6.2644-2650.2002
-
Angelidis AS, Smith LT, Hoffman LM, Smith GM (2002) Identification of OpuC as a chill-activated and osmotically activated carnitine transporter in Listeria monocytogenes. Appl Environ Microbiol 68: 2644-2650. (Pubitemid 34601981)
-
(2002)
Applied and Environmental Microbiology
, vol.68
, Issue.6
, pp. 2644-2650
-
-
Angelidis, A.S.1
Smith, L.T.2
Hoffman, L.M.3
Smith, G.M.4
-
16
-
-
33644905316
-
Cold-induced putative DEAD box RNA helicases CshA and CshB are essential for cold adaptation and interact with cold shock protein B in Bacillus subtilis
-
Hunger K, Beckering CL, Wiegeshoff F, Graumann PL, Marahiel MA (2006) Cold-induced putative DEAD box RNA helicases CshA and CshB are essential for cold adaptation and interact with cold shock protein B in Bacillus subtilis. J Bacteriol 188: 240-248.
-
(2006)
J Bacteriol
, vol.188
, pp. 240-248
-
-
Hunger, K.1
Beckering, C.L.2
Wiegeshoff, F.3
Graumann, P.L.4
Marahiel, M.A.5
-
17
-
-
79956071179
-
DEAD-box proteins as RNA helicases and chaperones
-
Jarmoskaite I, Russell R (2011) DEAD-box proteins as RNA helicases and chaperones. Wiley Interdiscip Rev RNA 2: 135-152.
-
(2011)
Wiley Interdiscip Rev RNA
, vol.2
, pp. 135-152
-
-
Jarmoskaite, I.1
Russell, R.2
-
18
-
-
2542557396
-
CsdA, a cold-shock RNA helicase from Escherichia coli, is involved in the biogenesis of 50S ribosomal subunit
-
DOI 10.1093/nar/gkh603
-
Charollais J, Dreyfus M, Iost I (2004) CsdA, a cold-shock RNA helicase from Escherichia coli, is involved in the biogenesis of 50S ribosomal subunit. Nucleic Acids Res 32: 2751-2759. (Pubitemid 38885946)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.9
, pp. 2751-2759
-
-
Charollais, J.1
Dreyfus, M.2
Iost, I.3
-
19
-
-
78049319805
-
Differential involvement of the five RNA helicases in adaptation of Bacillus cereus ATCC 14579 to low growth temperatures
-
Pandiani F, Brillard J, Bornard I, Michaud C, Chamot S, et al. (2010) Differential involvement of the five RNA helicases in adaptation of Bacillus cereus ATCC 14579 to low growth temperatures. Appl Environ Microbiol 76: 6692-6697.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 6692-6697
-
-
Pandiani, F.1
Brillard, J.2
Bornard, I.3
Michaud, C.4
Chamot, S.5
-
20
-
-
84864392067
-
Genes encoding putative DEAD-box RNA helicases in Listeria monocytogenes EGD-e are needed for growth and motility at 3 degrees C
-
Markkula A, Mattila M, Lindström M, Korkeala H (2012) Genes encoding putative DEAD-box RNA helicases in Listeria monocytogenes EGD-e are needed for growth and motility at 3 degrees C. Environ Microbiol 14: 2223-2232.
-
(2012)
Environ Microbiol
, vol.14
, pp. 2223-2232
-
-
Markkula, A.1
Mattila, M.2
Lindström, M.3
Korkeala, H.4
-
21
-
-
84857077677
-
Requirement for RNA helicase CsdA for growth of Yersinia pseudotuberculosis IP32953 at low temperatures
-
Palonen E, Lindström M, Somervuo P, Johansson P, Björkroth J, et al. (2012) Requirement for RNA helicase CsdA for growth of Yersinia pseudotuberculosis IP32953 at low temperatures. Appl Environ Microbiol 78: 1298-1301.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 1298-1301
-
-
Palonen, E.1
Lindström, M.2
Somervuo, P.3
Johansson, P.4
Björkroth, J.5
-
22
-
-
84881399824
-
Comparison of Clostridium botulinum genomes shows the absence of cold shock protein coding genes in type E neurotoxin producing strains
-
Söderholm H, Jaakkola K, Somervuo P, Laine P, Auvinen P, et al. (2013) Comparison of Clostridium botulinum genomes shows the absence of cold shock protein coding genes in type E neurotoxin producing strains. Botulinum J 2: 189-207.
-
(2013)
Botulinum J
, vol.2
, pp. 189-207
-
-
Söderholm, H.1
Jaakkola, K.2
Somervuo, P.3
Laine, P.4
Auvinen, P.5
-
23
-
-
79952794459
-
Protection of Bacillus subtilis against cold stress via compatible-solute acquisition
-
Hoffmann T, Bremer E (2011) Protection of Bacillus subtilis against cold stress via compatible-solute acquisition. J Bacteriol 193: 1552-1562.
-
(2011)
J Bacteriol
, vol.193
, pp. 1552-1562
-
-
Hoffmann, T.1
Bremer, E.2
-
24
-
-
0028061982
-
Microbial fatty acids and thermal adaptation
-
Suutari M, Laakso S (1994) Microbial fatty acids and thermal adaptation. Crit Rev Microbiol 20: 285-328. (Pubitemid 24375246)
-
(1994)
Critical Reviews in Microbiology
, vol.20
, Issue.4
, pp. 285-328
-
-
Suutari, M.1
Laakso, S.2
-
25
-
-
0037320187
-
Regulation of fatty acid desaturation in Bacillus subtilis
-
DOI 10.1016/S0952-3278(02)00269-7, PII S0952327802002697
-
Mansilla MC, Aguilar PS, Albanesi D, Cybulski LE, Altabe S, et al. (2003) Regulation of fatty acid desaturation in Bacillus subtilis. Prostaglandins Leukot Essent Fatty Acids 68: 187-190. (Pubitemid 36216483)
-
(2003)
Prostaglandins Leukotrienes and Essential Fatty Acids
, vol.68
, Issue.2
, pp. 187-190
-
-
Mansilla, M.C.1
Aguilar, P.S.2
Albanesi, D.3
Cybulski, L.E.4
Altabe, S.5
De Mendoza, D.6
-
26
-
-
0036049785
-
Mechanism of membrane fluidity optimization: Isothermal control of the Bacillus subtilis acyl-lipid desaturase
-
DOI 10.1046/j.1365-2958.2002.03103.x
-
Cybulski LE, Albanesi D, Mansilla MC, Altabe S, Aguilar PS, et al. (2002) Mechanism of membrane fluidity optimization: Isothermal control of the Bacillus subtilis acyl-lipid desaturase. Mol Microbiol 45: 1379-1388. (Pubitemid 35015360)
-
(2002)
Molecular Microbiology
, vol.45
, Issue.5
, pp. 1379-1388
-
-
Cybulski, L.E.1
Albanesi, D.2
Mansilla, M.C.3
Altabe, S.4
Aguilar, P.S.5
De Mendoza, D.6
-
27
-
-
0031946710
-
A Bacillus subtilis gene induced by cold shock encodes a membrane phospholipid desaturase
-
Aguilar PS, Cronan JE Jr, de Mendoza D (1998) A Bacillus subtilis gene induced by cold shock encodes a membrane phospholipid desaturase. J Bacteriol 180: 2194-2200. (Pubitemid 28212708)
-
(1998)
Journal of Bacteriology
, vol.180
, Issue.8
, pp. 2194-2200
-
-
Aguilar, P.S.1
Cronan Jr., J.E.2
De Mendoza, D.3
-
28
-
-
39149115737
-
Membrane lipid homeostasis in bacteria
-
Zhang YM, Rock CO (2008) Membrane lipid homeostasis in bacteria. Nat Rev Microbiol 6: 222-233.
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 222-233
-
-
Zhang, Y.M.1
Rock, C.O.2
-
29
-
-
0025890074
-
Iso- and anteiso-fatty acids in bacteria: Biosynthesis, function, and taxonomic significance
-
Kaneda T (1991) Iso- and anteiso-fatty acids in bacteria: biosynthesis, function, and taxonomic significance. Microbiol Rev 55: 288-302.
-
(1991)
Microbiol Rev
, vol.55
, pp. 288-302
-
-
Kaneda, T.1
-
30
-
-
73349083079
-
FabH selectivity for anteiso branched-chain fatty acid precursors in low-temperature adaptation in Listeria monocytogenes
-
Singh AK, Zhang YM, Zhu K, Subramanian C, Li Z, et al. (2009) FabH selectivity for anteiso branched-chain fatty acid precursors in low-temperature adaptation in Listeria monocytogenes. FEMS Microbiol Lett 301: 188-192.
-
(2009)
FEMS Microbiol Lett
, vol.301
, pp. 188-192
-
-
Singh, A.K.1
Zhang, Y.M.2
Zhu, K.3
Subramanian, C.4
Li, Z.5
-
31
-
-
0032860247
-
Cold shock response of Bacillus subtilis: Isoleucine-dependent switch in the fatty acid branching pattern for membrane adaptation to low temperatures
-
Klein W, Weber MHW, Marahiel MA (1999) Cold shock response of Bacillus subtilis: Isoleucine-dependent switch in the fatty acid branching pattern for membrane adaptation to low temperatures. J Bacteriol 181: 5341-5349. (Pubitemid 29416354)
-
(1999)
Journal of Bacteriology
, vol.181
, Issue.17
, pp. 5341-5349
-
-
Klein, W.1
Weber, M.H.W.2
Marahiel, M.A.3
-
32
-
-
0019312876
-
The lipid fatty acids of proteolytic clostridia
-
Elsden SR, Hilton MG, Parsley KR, Self R (1980) The lipid fatty acids of proteolytic clostridia. J Gen Microbiol 118: 115-123. (Pubitemid 10013772)
-
(1980)
Journal of General Microbiology
, vol.118
, Issue.1
, pp. 115-123
-
-
Elsden, S.R.1
Hilton, M.G.2
Parsley, K.R.3
Self, R.4
-
33
-
-
0014066439
-
Characterization of clostridia by gas chromatography. I. Differentiation of species by cellular fatty acids
-
Moss CW, Lewis VJ (1967) Characterization of clostridia by gas chromatography. I. Differentiation of species by cellular fatty acids. Appl Microbiol 15: 390-397.
-
(1967)
Appl Microbiol
, vol.15
, pp. 390-397
-
-
Moss, C.W.1
Lewis, V.J.2
-
34
-
-
0017884088
-
Volatile acid production from threonine, valine, leucine and isoleucine by clostridia
-
Elsden SR, Hilton MG (1978) Volatile acid production from threonine, valine, leucine and isoleucine by clostridia. Arch Microbiol 117: 165-172. (Pubitemid 8354225)
-
(1978)
Archives of Microbiology
, vol.117
, Issue.2
, pp. 165-172
-
-
Elsden, S.R.1
Hilton, M.G.2
-
35
-
-
0014602030
-
Comparison of the fatty acids of proteolytic type B and nonproteolytic types E and F of Clostridium botulinum
-
Kimble CE, McCollough ML, Paterno VA, Anderson AW (1969) Comparison of the fatty acids of proteolytic type B and nonproteolytic types E and F of Clostridium botulinum. Appl Microbiol 18: 883-888.
-
(1969)
Appl Microbiol
, vol.18
, pp. 883-888
-
-
Kimble, C.E.1
McCollough, M.L.2
Paterno, V.A.3
Anderson, A.W.4
-
36
-
-
0036211902
-
Identification of Listeria monocytogenes genes expressed in response to growth at low temperature
-
DOI 10.1128/AEM.68.4.1697-1705.2002
-
Liu S, Graham JE, Bigelow L, Morse PD 2nd, Wilkinson BJ (2002) Identification of Listeria monocytogenes genes expressed in response to growth at low temperature. Appl Environ Microbiol 68: 1697-1705. (Pubitemid 34279977)
-
(2002)
Applied and Environmental Microbiology
, vol.68
, Issue.4
, pp. 1697-1705
-
-
Liu, S.1
Graham, J.E.2
Bigelow, L.3
Morse II, P.D.4
Wilkinson, B.J.5
-
37
-
-
64049094509
-
Psychrobacter arcticus 273-4 uses resource efficiency and molecular motion adaptations for subzero temperature growth
-
Bergholz PW, Bakermans C, Tiedje JM (2009) Psychrobacter arcticus 273-4 uses resource efficiency and molecular motion adaptations for subzero temperature growth. J Bacteriol 191: 2340-2352.
-
(2009)
J Bacteriol
, vol.191
, pp. 2340-2352
-
-
Bergholz, P.W.1
Bakermans, C.2
Tiedje, J.M.3
-
38
-
-
16844384949
-
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis
-
DOI 10.1128/JB.187.8.2810-2826.2005
-
Höper D, Völker U, Hecker M (2005) Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis. J Bacteriol 187: 2810-2826. (Pubitemid 40490386)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.8
, pp. 2810-2826
-
-
Hoper, D.1
Volker, U.2
Hecker, M.3
-
39
-
-
84864008980
-
Contributions of individual sigmaB-dependent general stress genes to oxidative stress resistance of Bacillus subtilis
-
Reder A, Höper D, Gerth U, Hecker M (2012) Contributions of individual sigmaB-dependent general stress genes to oxidative stress resistance of Bacillus subtilis. J Bacteriol 194: 3601-3610.
-
(2012)
J Bacteriol
, vol.194
, pp. 3601-3610
-
-
Reder, A.1
Höper, D.2
Gerth, U.3
Hecker, M.4
-
41
-
-
33645065589
-
Iron-sulphur clusters and the problem with oxygen
-
Imlay JA (2006) Iron-sulphur clusters and the problem with oxygen. Mol Microbiol 59: 1073-1082.
-
(2006)
Mol Microbiol
, vol.59
, pp. 1073-1082
-
-
Imlay, J.A.1
-
42
-
-
27744568353
-
Genetic composition of the Bacillus subtilis SOS system
-
DOI 10.1128/JB.187.22.7655-7666.2005
-
Au N, Kuester-Schoeck E, Mandava V, Bothwell LE, Canny SP, et al. (2005) Genetic composition of the Bacillus subtilis SOS system. J Bacteriol 187: 7655-7666. (Pubitemid 41587704)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.22
, pp. 7655-7666
-
-
Au, N.1
Kuester-Schoeck, E.2
Mandava, V.3
Bothwell, L.E.4
Canny, S.P.5
Chachu, K.6
Colavito, S.A.7
Fuller, S.N.8
Groban, E.S.9
Hensley, L.A.10
O'Brien, T.C.11
Shah, A.12
Tierney, J.T.13
Tomm, L.L.14
O'Gara, T.M.15
Goranov, A.I.16
Grossman, A.D.17
Lovett, C.M.18
-
43
-
-
84896093192
-
The DNA damage response
-
Hengge R, Storz G, editors. Washington, DC: ASM Press
-
Lovett ST (2011) The DNA damage response. In: Hengge R, Storz G, editors. Bacterial Stress Responses. Washington, DC: ASM Press. 205-216.
-
(2011)
Bacterial Stress Responses
, pp. 205-216
-
-
Lovett, S.T.1
-
44
-
-
84871900089
-
Catalase activity as a biomarker for mild-stress-induced robustness in Bacillus weihenstephanensis
-
den Besten HM, Effraimidou S, Abee T (2013) Catalase activity as a biomarker for mild-stress-induced robustness in Bacillus weihenstephanensis. Appl Environ Microbiol 79: 57-62.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 57-62
-
-
Den Besten, H.M.1
Effraimidou, S.2
Abee, T.3
-
45
-
-
15744374882
-
Metal ion homeostasis in Bacillus subtilis
-
DOI 10.1016/j.mib.2005.02.007, Cell Regulation
-
Moore CM, Helmann JD (2005) Metal ion homeostasis in Bacillus subtilis. Curr Opin Microbiol 8: 188-195. (Pubitemid 40417961)
-
(2005)
Current Opinion in Microbiology
, vol.8
, Issue.2
, pp. 188-195
-
-
Moore, C.M.1
Helmann, J.D.2
-
46
-
-
26444483354
-
Transcriptional program of early sporulation and stationary-phase events in Clostridium acetobutylicum
-
DOI 10.1128/JB.187.20.7103-7118.2005
-
Alsaker KV, Papoutsakis ET (2005) Transcriptional program of early sporulation and stationary-phase events in Clostridium acetobutylicum. J Bacteriol 187: 7103-7118. (Pubitemid 41428887)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.20
, pp. 7103-7118
-
-
Alsaker, K.V.1
Papoutsakis, E.T.2
-
47
-
-
0023866523
-
Development of improved defined media for Clostridium botulinum serotypes A, B, and E
-
Whitmer ME, Johnson EA (1988) Development of improved defined media for Clostridium botulinum serotypes A, B, and E. Appl Environ Microbiol 54: 753-759. (Pubitemid 18069651)
-
(1988)
Applied and Environmental Microbiology
, vol.54
, Issue.3
, pp. 753-759
-
-
Whitmer, M.E.1
Johnson, E.A.2
-
48
-
-
0024351894
-
Regulation of neurotoxin and protease formation in Clostridium botulinum Okra B and Hall A by arginine
-
Patterson-Curtis SI, Johnson EA (1989) Regulation of neurotoxin and protease formation in Clostridium botulinum Okra B and Hall A by arginine. Appl Environ Microbiol 55: 1544-1548. (Pubitemid 19155079)
-
(1989)
Applied and Environmental Microbiology
, vol.55
, Issue.6
, pp. 1544-1548
-
-
Patterson-Curtis, S.I.1
Johnson, E.A.2
-
49
-
-
0001502558
-
Studies in the metabolism of the strict anaerobes (genus Clostridium): The chemical reactions by which Cl. sporogenes obtains its energy
-
Stickland LH (1934) Studies in the metabolism of the strict anaerobes (genus Clostridium): The chemical reactions by which Cl. sporogenes obtains its energy. Biochem J 28: 1746-1759.
-
(1934)
Biochem J
, vol.28
, pp. 1746-1759
-
-
Stickland, L.H.1
-
50
-
-
35448958030
-
Microarray-based characterization of the Listeria monocytogenes cold regulon in log- and stationary-phase cells
-
DOI 10.1128/AEM.00897-07
-
Chan YC, Raengpradub S, Boor KJ, Wiedmann M (2007) Microarray-based characterization of the Listeria monocytogenes cold regulon in log- and stationary-phase cells. Appl Environ Microbiol 73: 6484-6498. (Pubitemid 47623707)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.20
, pp. 6484-6498
-
-
Chan, Y.C.1
Raengpradub, S.2
Boor, K.J.3
Wiedmann, M.4
-
51
-
-
0141789637
-
Surviving the acid test: Responses of gram-positive bacteria to low pH
-
DOI 10.1128/MMBR.67.3.429-453.2003
-
Cotter PD, Hill C (2003) Surviving the acid test: responses of gram-positive bacteria to low pH. Microbiol Mol Biol Rev 67: 429-453. (Pubitemid 37122528)
-
(2003)
Microbiology and Molecular Biology Reviews
, vol.67
, Issue.3
, pp. 429-453
-
-
Cotter, P.D.1
Hill, C.2
-
52
-
-
77957664849
-
Clostridium sticklandii, a specialist in amino acid degradation: Revisiting its metabolism through its genome sequence
-
Fonknechten N, Chaussonnerie S, Tricot S, Lajus A, Andreesen JR, et al. (2010) Clostridium sticklandii, a specialist in amino acid degradation: revisiting its metabolism through its genome sequence. BMC Genomics 11: 555.
-
(2010)
BMC Genomics
, vol.11
, pp. 555
-
-
Fonknechten, N.1
Chaussonnerie, S.2
Tricot, S.3
Lajus, A.4
Andreesen, J.R.5
-
53
-
-
15744389217
-
CodY, a global regulator of stationary phase and virulence in Gram-positive bacteria
-
Sonenshein AL (2005) CodY, a global regulator of stationary phase and virulence in Gram-positive bacteria. Curr Opin Microbiol 8: 203-207.
-
(2005)
Curr Opin Microbiol
, vol.8
, pp. 203-207
-
-
Sonenshein, A.L.1
-
54
-
-
26644445945
-
The Lactococcus lactis CodY regulon: Identification of a conserved cis-regulatory element
-
DOI 10.1074/jbc.M502349200
-
den Hengst CD, van Hijum SA, Geurts JM, Nauta A, Kok J, et al. (2005) The Lactococcus lactis CodY regulon: identification of a conserved cis-regulatory element. J Biol Chem 280: 34332-34342. (Pubitemid 41443159)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.40
, pp. 34332-34342
-
-
Den, H.C.D.1
Van Hijum, S.A.F.T.2
Geurts, J.M.W.3
Nauta, A.4
Kok, J.5
Kuipers, O.P.6
-
55
-
-
38949153839
-
Genetic and biochemical analysis of CodY-binding sites in Bacillus subtilis
-
DOI 10.1128/JB.01780-07
-
Belitsky BR, Sonenshein AL (2008) Genetic and biochemical analysis of CodY-binding sites in Bacillus subtilis. J Bacteriol 190: 1224-1236. (Pubitemid 351215003)
-
(2008)
Journal of Bacteriology
, vol.190
, Issue.4
, pp. 1224-1236
-
-
Belitsky, B.R.1
Sonenshein, A.L.2
-
56
-
-
77957834634
-
Integration of metabolism and virulence by Clostridium difficile CodY
-
Dineen SS, McBride SM, Sonenshein AL (2010) Integration of metabolism and virulence by Clostridium difficile CodY. J Bacteriol 192: 5350-5362.
-
(2010)
J Bacteriol
, vol.192
, pp. 5350-5362
-
-
Dineen, S.S.1
McBride, S.M.2
Sonenshein, A.L.3
-
57
-
-
84876877656
-
Genome-wide identification of Bacillus subtilis CodY-binding sites at single-nucleotide resolution
-
Belitsky BR, Sonenshein AL (2013) Genome-wide identification of Bacillus subtilis CodY-binding sites at single-nucleotide resolution. Proc Natl Acad Sci U S A 110: 7026-7031.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 7026-7031
-
-
Belitsky, B.R.1
Sonenshein, A.L.2
-
58
-
-
36248971737
-
Control of key metabolic intersections in Bacillus subtilis
-
Sonenshein AL (2007) Control of key metabolic intersections in Bacillus subtilis. Nat Rev Microbiol 5: 917-927.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 917-927
-
-
Sonenshein, A.L.1
-
59
-
-
73649096202
-
The synthesis and function of the alarmone (p)ppGpp in firmicutes
-
Wolz C, Geiger T, Goerke C (2010) The synthesis and function of the alarmone (p)ppGpp in firmicutes. Int J Med Microbiol 300: 142-147.
-
(2010)
Int J Med Microbiol
, vol.300
, pp. 142-147
-
-
Wolz, C.1
Geiger, T.2
Goerke, C.3
-
60
-
-
0026680453
-
Function of a relaxed-like state following temperature downshifts in Escherichia coli
-
Jones PG, Cashel M, Glaser G, Neidhardt FC (1992) Function of a relaxed-like state following temperature downshifts in Escherichia coli. J Bacteriol 174: 3903-3914.
-
(1992)
J Bacteriol
, vol.174
, pp. 3903-3914
-
-
Jones, P.G.1
Cashel, M.2
Glaser, G.3
Neidhardt, F.C.4
-
61
-
-
0028363836
-
The cold-shock response - A hot topic
-
Jones PG, Inouye M (1994) The cold-shock response-a hot topic. Mol Microbiol 11: 811-818.
-
(1994)
Mol Microbiol
, vol.11
, pp. 811-818
-
-
Jones, P.G.1
Inouye, M.2
-
62
-
-
33846979122
-
Characterization of relA and codY mutants of Listeria monocytogenes: Identification of the CodY regulon and its role in virulence
-
Bennett HJ, Pearce DM, Glenn S, Taylor CM, Kuhn M, et al. (2007) Characterization of relA and codY mutants of Listeria monocytogenes: identification of the CodY regulon and its role in virulence. Mol Microbiol 63: 1453-1467.
-
(2007)
Mol Microbiol
, vol.63
, pp. 1453-1467
-
-
Bennett, H.J.1
Pearce, D.M.2
Glenn, S.3
Taylor, C.M.4
Kuhn, M.5
-
63
-
-
84866893169
-
Integrative genomic analysis identifies isoleucine and CodY as regulators of Listeria monocytogenes virulence
-
Lobel L, Sigal N, Borovok I, Ruppin E, Herskovits AA (2012) Integrative genomic analysis identifies isoleucine and CodY as regulators of Listeria monocytogenes virulence. PLoS Genet 8: e1002887.
-
(2012)
PLoS Genet
, vol.8
-
-
Lobel, L.1
Sigal, N.2
Borovok, I.3
Ruppin, E.4
Herskovits, A.A.5
-
64
-
-
41549166183
-
Staphylococcus aureus CodY negatively regulates virulence gene expression
-
DOI 10.1128/JB.01545-07
-
Majerczyk CD, Sadykov MR, Luong TT, Lee C, Somerville GA, et al. (2008) Staphylococcus aureus CodY negatively regulates virulence gene expression. J Bacteriol 190: 2257-2265. (Pubitemid 351466319)
-
(2008)
Journal of Bacteriology
, vol.190
, Issue.7
, pp. 2257-2265
-
-
Majerczyk, C.D.1
Sadykov, M.R.2
Luong, T.T.3
Lee, C.4
Somerville, G.A.5
Sonenshein, A.L.6
-
65
-
-
33644872577
-
Limma: Linear models for microarray data
-
Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W, editors. New York: Springer
-
Smyth G (2005) Limma: linear models for microarray data. In: Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W, editors. Bioinformatics and computational biology solutions using R and Bioconductor. New York: Springer. 397-420.
-
(2005)
Bioinformatics and Computational Biology Solutions Using R and Bioconductor
, pp. 397-420
-
-
Smyth, G.1
-
66
-
-
35748949257
-
A comparison of background correction methods for two-colour microarrays
-
DOI 10.1093/bioinformatics/btm412
-
Ritchie ME, Silver J, Oshlack A, Holmes M, Diyagama D, et al. (2007) A comparison of background correction methods for two-colour microarrays. Bioinformatics 23: 2700-2707. (Pubitemid 350048334)
-
(2007)
Bioinformatics
, vol.23
, Issue.20
, pp. 2700-2707
-
-
Ritchie, M.E.1
Silver, J.2
Oshlack, A.3
Holmes, M.4
Diyagama, D.5
Holloway, A.6
Smyth, G.K.7
-
67
-
-
0242333835
-
Normalization of cDNA microarray data
-
DOI 10.1016/S1046-2023(03)00155-5
-
Smyth GK, Speed T (2003) Normalization of cDNA microarray data. Methods 31: 265-273. (Pubitemid 37338763)
-
(2003)
Methods
, vol.31
, Issue.4
, pp. 265-273
-
-
Smyth, G.K.1
Speed, T.2
-
68
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Smyth GK (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
, pp. 3
-
-
Smyth, G.K.1
-
70
-
-
0036899286
-
From patterns to pathways: Gene expression data analysis comes of age
-
Slonim DK (2002) From patterns to pathways: gene expression data analysis comes of age. Nat Genet 32 Suppl: 502-508.
-
(2002)
Nat Genet
, vol.32
, Issue.SUPPL.
, pp. 502-508
-
-
Slonim, D.K.1
-
71
-
-
84944178665
-
Hierarchical grouping to optimize an objective function
-
Ward JH (1963) Hierarchical grouping to optimize an objective function. J Am Stat Assoc 58: 236-244.
-
(1963)
J Am Stat Assoc
, vol.58
, pp. 236-244
-
-
Ward, J.H.1
-
72
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29: e45.
-
(2001)
Nucleic Acids Res
, vol.29
-
-
Pfaffl, M.W.1
-
73
-
-
54449094694
-
Quantitative real-time reverse transcription-PCR analysis reveals stable and prolonged neurotoxin cluster gene activity in a Clostridium botulinum Type E Strain at refrigeration temperature
-
Chen Y, Korkeala H, Lindén J, Lindström M (2008) Quantitative real-time reverse transcription-PCR analysis reveals stable and prolonged neurotoxin cluster gene activity in a Clostridium botulinum Type E Strain at refrigeration temperature. Appl Environ Microbiol 74: 6132-6137.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 6132-6137
-
-
Chen, Y.1
Korkeala, H.2
Lindén, J.3
Lindström, M.4
-
74
-
-
2442664447
-
Relative neurotoxin gene expression in Clostridium botulinum type B, determined using quantitative reverse transcription-PCR
-
Lövenklev M, Holst E, Borch E, Rådstrom P (2004) Relative neurotoxin gene expression in Clostridium botulinum type B, determined using quantitative reverse transcription-PCR. Appl Environ Microbiol 70: 2919-2927.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 2919-2927
-
-
Lövenklev, M.1
Holst, E.2
Borch, E.3
Rådstrom, P.4
-
75
-
-
78650110829
-
ClosTron-targeted mutagenesis
-
Heap JT, Cartman ST, Kuehne SA, Cooksley C, Minton NP (2010) ClosTron-targeted mutagenesis. Methods Mol Biol 646: 165-182.
-
(2010)
Methods Mol Biol
, vol.646
, pp. 165-182
-
-
Heap, J.T.1
Cartman, S.T.2
Kuehne, S.A.3
Cooksley, C.4
Minton, N.P.5
-
76
-
-
80052931006
-
ClosTron-mediated engineering of Clostridium
-
Kuehne SA, Heap JT, Cooksley CM, Cartman ST, Minton NP (2011) ClosTron-mediated engineering of Clostridium. Methods Mol Biol 765: 389-407.
-
(2011)
Methods Mol Biol
, vol.765
, pp. 389-407
-
-
Kuehne, S.A.1
Heap, J.T.2
Cooksley, C.M.3
Cartman, S.T.4
Minton, N.P.5
-
77
-
-
71749102588
-
The ClosTron: Mutagenesis in Clostridium refined and streamlined
-
Heap JT, Kuehne SA, Ehsaan M, Cartman ST, Cooksley CM, et al. (2010) The ClosTron: Mutagenesis in Clostridium refined and streamlined. J Microbiol Methods 80: 49-55.
-
(2010)
J Microbiol Methods
, vol.80
, pp. 49-55
-
-
Heap, J.T.1
Kuehne, S.A.2
Ehsaan, M.3
Cartman, S.T.4
Cooksley, C.M.5
-
78
-
-
84875975840
-
Two-component signal transduction system CBO0787/CBO0786 represses transcription from botulinum neurotoxin promoters in Clostridium botulinum ATCC 3502
-
Zhang Z, Korkeala H, Dahlsten E, Sahala E, Heap JT, et al. (2013) Two-component signal transduction system CBO0787/CBO0786 represses transcription from botulinum neurotoxin promoters in Clostridium botulinum ATCC 3502. PLoS Pathog 9: e1003252.
-
(2013)
PLoS Pathog
, vol.9
-
-
Zhang, Z.1
Korkeala, H.2
Dahlsten, E.3
Sahala, E.4
Heap, J.T.5
-
79
-
-
60849094064
-
Group I Clostridium botulinum strains show significant variation in growth at low and high temperatures
-
Hinderink K, Lindström M, Korkeala H (2009) Group I Clostridium botulinum strains show significant variation in growth at low and high temperatures. J Food Prot 72: 375-383.
-
(2009)
J Food Prot
, vol.72
, pp. 375-383
-
-
Hinderink, K.1
Lindström, M.2
Korkeala, H.3
|