-
1
-
-
59149102602
-
Phylogenetic and functional assessment of orthologs inference projects and methods
-
Altenhoff, A.M. and Dessimoz, C. (2009) 'Phylogenetic and functional assessment of orthologs inference projects and methods', PLoS Computational Biology, Vol. 5, No. 1, p.e1000262.
-
(2009)
PLoS Computational Biology
, vol.5
, Issue.1
-
-
Altenhoff, A.M.1
Dessimoz, C.2
-
2
-
-
0030025923
-
Cold stress proteins induced in Listeria monocytogenes in response to temperature downshock and growth at low temperatures
-
Bayles, D.O., Annous, B.A. and Wilkinson, B.J. (1996) 'Cold stress proteins induced in Listeria monocytogenes in response to temperature downshock and growth at low temperatures', Applied and Environmental Microbiology, Vol. 62, No. 3, pp.1116-1119.
-
(1996)
Applied and Environmental Microbiology
, vol.62
, Issue.3
, pp. 1116-1119
-
-
Bayles, D.O.1
Annous, B.A.2
Wilkinson, B.J.3
-
3
-
-
75549083527
-
Pathema: A clade-specific bioinformatics resource center for pathogen research
-
Database issue
-
Brinkac, L.M., Davidsen, T., Beck, E., Ganapathy, A., Caler, E., Dodson, R.J., Durkin, A.S., Harkins, D.M., Lorenzi, H., Madupu, R., Sebastian, Y., Shrivastava, S., Thiagarajan, M., Orvis, J., Sundaram, J.P., Crabtree, J., Galens, K., Zhao, Y., Inman, J.M., Montgomery, R., Schobel, S., Galinsky, K., Tanenbaum, D.M., Resnick, A., Zafar, N., White, O. and Sutton, G. (2010) 'Pathema: a clade-specific bioinformatics resource center for pathogen research', Nucleic Acids Research, Vol. 38, Database issue, pp.D408-414.
-
(2010)
Nucleic Acids Research
, vol.38
-
-
Brinkac, L.M.1
Davidsen, T.2
Beck, E.3
Ganapathy, A.4
Caler, E.5
Dodson, R.J.6
Durkin, A.S.7
Harkins, D.M.8
Lorenzi, H.9
Madupu, R.10
Sebastian, Y.11
Shrivastava, S.12
Thiagarajan, M.13
Orvis, J.14
Sundaram, J.P.15
Crabtree, J.16
Galens, K.17
Zhao, Y.18
Inman, J.M.19
Montgomery, R.20
Schobel, S.21
Galinsky, K.22
Tanenbaum, D.M.23
Resnick, A.24
Zafar, N.25
White, O.26
Sutton, G.27
more..
-
4
-
-
65349103916
-
Independent evolution of neurotoxin and flagellar genetic loci in proteolytic Clostridium botulinum
-
doi:10.1186/1471-2164-10-115
-
Carter, A.T., Paul, C.J., Mason, D.R., Twine, S.M., Alston, M.J., Logan, S.M., Austin, J.W. and Peck, M.W. (2009) 'Independent evolution of neurotoxin and flagellar genetic loci in proteolytic Clostridium botulinum', BMC Genomics, Vol. 10, p.115, doi:10.1186/1471-2164- 10-115.
-
(2009)
BMC Genomics
, vol.10
, pp. 115
-
-
Carter, A.T.1
Paul, C.J.2
Mason, D.R.3
Twine, S.M.4
Alston, M.J.5
Logan, S.M.6
Austin, J.W.7
Peck, M.W.8
-
5
-
-
33646839948
-
Cold-adapted archaea
-
Cavicchioli, R. (2006) 'Cold-adapted archaea', Nature Reviews Microbiology, Vol. 4, No. 5, pp.331-343.
-
(2006)
Nature Reviews Microbiology
, vol.4
, Issue.5
, pp. 331-343
-
-
Cavicchioli, R.1
-
6
-
-
36749064387
-
Sequencing the botulinum neurotoxin gene and related genes in Clostridium botulinum type e strains reveals orfx3 and a novel type e neurotoxin subtype
-
Chen, Y., Korkeala, H., Aarnikunnas, J. and Lindström, M. (2007) 'Sequencing the botulinum neurotoxin gene and related genes in Clostridium botulinum type E strains reveals orfx3 and a novel type E neurotoxin subtype', Journal of Bacteriology, Vol. 189, No. 23, pp.8643-8650.
-
(2007)
Journal of Bacteriology
, vol.189
, Issue.23
, pp. 8643-8650
-
-
Chen, Y.1
Korkeala, H.2
Aarnikunnas, J.3
Lindström, M.4
-
7
-
-
0031889897
-
Phylogeny and taxonomy of the food-borne pathogen Clostridium botulinum and its neurotoxins
-
Collins, M.D. and East, A.K. (1998) 'Phylogeny and taxonomy of the food-borne pathogen Clostridium botulinum and its neurotoxins', Journal of Applied Microbiology, Vol. 84, No. 1, pp.5-17.
-
(1998)
Journal of Applied Microbiology
, vol.84
, Issue.1
, pp. 5-17
-
-
Collins, M.D.1
East, A.K.2
-
8
-
-
80655133949
-
Growth of group II Clostridium botulinum strains at extreme temperature
-
Derman, Y., Lindström, M., Selby, K. and Korkeala, H. (2011) 'Growth of group II Clostridium botulinum strains at extreme temperature', Journal of Food Protection, Vol. 74, No. 11, pp.1797-1804.
-
(2011)
Journal of Food Protection
, vol.74
, Issue.11
, pp. 1797-1804
-
-
Derman, Y.1
Lindström, M.2
Selby, K.3
Korkeala, H.4
-
9
-
-
23244464600
-
Bacterial plurality as a general mechanism driving persistence in chronic infections
-
Ehrlich, G.D., Hu, F.Z., Shen, K., Stoodley, P. and Post, J.C. (2005) 'Bacterial plurality as a general mechanism driving persistence in chronic infections', Clinical Orthopaedics and Related Research, August, Vol. 437, pp.20-24.
-
(2005)
Clinical Orthopaedics and Related Research, August
, vol.437
, pp. 20-24
-
-
Ehrlich, G.D.1
Hu, F.Z.2
Shen, K.3
Stoodley, P.4
Post, J.C.5
-
10
-
-
0036867143
-
Bacterial cold-schock proteins
-
Ermolenko, D.N. and Makhatadze, G.I. (2002) 'Bacterial cold-schock proteins', Cellular and Molecular Life Sciences, Vol. 59, No. 11, pp.1902-1913.
-
(2002)
Cellular and Molecular Life Sciences
, vol.59
, Issue.11
, pp. 1902-1913
-
-
Ermolenko, D.N.1
Makhatadze, G.I.2
-
11
-
-
80855134793
-
PATRIC: The comprehensive bacterial bioinformatics resource with a focus on human pathogenic species
-
Gillespie, J.J., Wattam, A.R., Cammer, S.A., Gabbard, J.L., Shukla, M.P., Dalay, O., Driscoll, T., Hix, D., Mane, S.P., Mao, C., Nordberg, E.K., Scott, M., Schulman, J.R., Snyder, E.E., Sullivan, D.E., Wang, C., Warren, A., Williams, K.P., Xue, T., Yoo, H.S., Zhang, C., Zhang, Y., Will, R., Kenyon, R.W. and Sobral, B.W. (2011) 'PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species', Infection and Immunity, Vol. 79, No. 11, pp.4286-4298.
-
(2011)
Infection and Immunity
, vol.79
, Issue.11
, pp. 4286-4298
-
-
Gillespie, J.J.1
Wattam, A.R.2
Cammer, S.A.3
Gabbard, J.L.4
Shukla, M.P.5
Dalay, O.6
Driscoll, T.7
Hix, D.8
Mane, S.P.9
Mao, C.10
Nordberg, E.K.11
Scott, M.12
Schulman, J.R.13
Snyder, E.E.14
Sullivan, D.E.15
Wang, C.16
Warren, A.17
Williams, K.P.18
Xue, T.19
Yoo, H.S.20
Zhang, C.21
Zhang, Y.22
Will, R.23
Kenyon, R.W.24
Sobral, B.W.25
more..
-
12
-
-
0029823884
-
Some like it cold: Response of microorganisms to cold shock
-
Graumann, P. and Marahiel, M.A. (1996) 'Some like it cold: response of microorganisms to cold shock', Archives of Microbiology, Vol. 166, No. 5, pp.293-300.
-
(1996)
Archives of Microbiology
, vol.166
, Issue.5
, pp. 293-300
-
-
Graumann, P.1
Marahiel, M.A.2
-
13
-
-
0030988929
-
Effects of heterologous expression of CspB, the major cold shock protein of Bacillus subtilis, on protein synthesis in Escherichia coli
-
Graumann, P. and Marahiel, M.A. (1997) 'Effects of heterologous expression of CspB, the major cold shock protein of Bacillus subtilis, on protein synthesis in Escherichia coli', Molecular and General Genetics, Vol. 253, No. 6, pp.745-752.
-
(1997)
Molecular and General Genetics
, vol.253
, Issue.6
, pp. 745-752
-
-
Graumann, P.1
Marahiel, M.A.2
-
14
-
-
0030826392
-
A family of cold shock proteins in Bacillus subtilis is essential for cellular growth and for efficient protein synthesis at optimal and low temperatures
-
Graumann, P., Wendrich, T.M., Weber, M.H., Schroder, K. and Marahiel, M.A. (1997) 'A family of cold shock proteins in Bacillus subtilis is essential for cellular growth and for efficient protein synthesis at optimal and low temperatures', Molecular Microbiology, Vol. 25, No. 4, pp.741-756.
-
(1997)
Molecular Microbiology
, vol.25
, Issue.4
, pp. 741-756
-
-
Graumann, P.1
Wendrich, T.M.2
Weber, M.H.3
Schroder, K.4
Marahiel, M.A.5
-
15
-
-
0031658803
-
A superfamily of proteins that contain the cold-shock domain
-
Graumann, P.L. and Marahiel, M.A. (1998) 'A superfamily of proteins that contain the cold-shock domain', Trends in Biochemical Sciences, Vol. 23, No. 8, pp.286-290.
-
(1998)
Trends in Biochemical Sciences
, vol.23
, Issue.8
, pp. 286-290
-
-
Graumann, P.L.1
Marahiel, M.A.2
-
16
-
-
0029760156
-
Cold shock proteins and cold acclimation proteins in the psychrotrophic bacterium Pseudomonas putida Q5 and its transconjugant
-
Gumley, A.W. and Inniss, W.E. (1996) 'Cold shock proteins and cold acclimation proteins in the psychrotrophic bacterium Pseudomonas putida Q5 and its transconjugant', Canadian Journal of Microbiology, Vol. 42, No. 8, pp.798-803.
-
(1996)
Canadian Journal of Microbiology
, vol.42
, Issue.8
, pp. 798-803
-
-
Gumley, A.W.1
Inniss, W.E.2
-
17
-
-
0040626487
-
Cold shock response and low temperature adaptation in psychrotrophic bacteria
-
Hébraud, M. and Potler, P. (1999) 'Cold shock response and low temperature adaptation in psychrotrophic bacteria', Journal of Molecular Microbiological Biotechnology, Vol. 1, No. 2, pp.211-219.
-
(1999)
Journal of Molecular Microbiological Biotechnology
, vol.1
, Issue.2
, pp. 211-219
-
-
Hébraud, M.1
Potler, P.2
-
18
-
-
33846598840
-
Genetic diversity among botulinum neurotoxin-roducing clostridial strains
-
Hill, K.K., Smith, T.J., Helma, C.H., Ticknor, L.O., Foley, B.T., Svensson, R.T., Brown, J.L., Johnson, E.A., Smith, L.A., Okinaka, R.T., Jackson, P.J. and Marks, J.D. (2007) 'Genetic diversity among botulinum neurotoxin-roducing clostridial strains', Journal of Bacteriology, Vol. 89, No. 3, pp.818-832.
-
(2007)
Journal of Bacteriology
, vol.89
, Issue.3
, pp. 818-832
-
-
Hill, K.K.1
Smith, T.J.2
Helma, C.H.3
Ticknor, L.O.4
Foley, B.T.5
Svensson, R.T.6
Brown, J.L.7
Johnson, E.A.8
Smith, L.A.9
Okinaka, R.T.10
Jackson, P.J.11
Marks, J.D.12
-
19
-
-
70449503695
-
Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, e and F and Clostridiumbutyricum type e strains
-
doi:10.1186/1741-7007-7-66
-
Hill, K.K., Xie, G., Foley, B.T., Smith, T.J., Munk, A.C., Bruce, D., Smith, L.A., Brettin, T.S. and Detter, J.C. (2009) 'Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridiumbutyricum type E strains', BMC Biology, Vol. 7, p.66, doi:10.1186/1741-7007-7-66.
-
(2009)
BMC Biology
, vol.7
, pp. 66
-
-
Hill, K.K.1
Xie, G.2
Foley, B.T.3
Smith, T.J.4
Munk, A.C.5
Bruce, D.6
Smith, L.A.7
Brettin, T.S.8
Detter, J.C.9
-
20
-
-
34250720036
-
Structure and function of bacterial cold shock proteins
-
Horn, G., Hofweber, R., Kremer, W. and Kalbitzer, H.R. (2007) 'Structure and function of bacterial cold shock proteins', Cellular and Molecular Life Sciences, Vol. 64, No. 12, pp.1457-1470.
-
(2007)
Cellular and Molecular Life Sciences
, vol.64
, Issue.12
, pp. 1457-1470
-
-
Horn, G.1
Hofweber, R.2
Kremer, W.3
Kalbitzer, H.R.4
-
21
-
-
0027884842
-
Genetic interrelationships of proteolytic Clostridium botulinum types A, B and F and other members of the Clostridium botulinum complex as revealed by small-subunit rRNA gene sequences
-
Schocken-Itturino, R.P., Böttger, E.C. and Collins, M.D
-
Hutson, R.A., Thompson, D.E., Lawson, P.A., Schocken-Itturino, R.P., Böttger, E.C. and Collins, M.D. (1993) 'Genetic interrelationships of proteolytic Clostridium botulinum types A, B and F and other members of the Clostridium botulinum complex as revealed by small-subunit rRNA gene sequences', Antonie van Leeuwenhoek, Vol. 64, Nos. 3-4, pp.273-283.
-
(1993)
Antonie Van Leeuwenhoek
, vol.64
, Issue.3-4
, pp. 273-283
-
-
Hutson, R.A.1
Thompson, D.E.2
Lawson, P.A.3
-
22
-
-
33750963307
-
Identification of Clostridium species and DNA fingerprinting of Clostridium perfringens by amplified fragment length polymorphism analysis
-
Keto-Timonen, R., Heikinheimo, A., Eerola, E. and Korkeala, H. (2006) 'Identification of Clostridium species and DNA fingerprinting of Clostridium perfringens by amplified fragment length polymorphism analysis', Journal of Clinical Microbiology, Vol. 44, No. 11, pp.4057-4065.
-
(2006)
Journal of Clinical Microbiology
, vol.44
, Issue.11
, pp. 4057-4065
-
-
Keto-Timonen, R.1
Heikinheimo, A.2
Eerola, E.3
Korkeala, H.4
-
23
-
-
15444379156
-
Efficient DNA fingerprinting of Clostridium botulinum types A, B, E, and F by amplified fragment length polymorphism analysis
-
Keto-Timonen, R., Nevas, M. and Korkeala, H. (2005) 'Efficient DNA fingerprinting of Clostridium botulinum types A, B, E, and F by amplified fragment length polymorphism analysis', Applied and Environmental Microbiology, Vol. 71, No. 3, pp.1148-1154.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.3
, pp. 1148-1154
-
-
Keto-Timonen, R.1
Nevas, M.2
Korkeala, H.3
-
24
-
-
33646250173
-
Laboratory diagnostics of botulism
-
Lindström, M. and Korkeala, H. (2006) 'Laboratory diagnostics of botulism', Clinical Microbiology Reviews, Vol. 19, No. 2, pp.298-314.
-
(2006)
Clinical Microbiology Reviews
, vol.19
, Issue.2
, pp. 298-314
-
-
Lindström, M.1
Korkeala, H.2
-
25
-
-
15444379930
-
Proteolytic Clostridium botulinum type B in the gastric content of a patient with type e botulism due to whitefish eggs
-
Lindström, M., Hielm, S., Nevas, M., Tuisku, S. and Korkeala, H. (2004) 'Proteolytic Clostridium botulinum type B in the gastric content of a patient with type E botulism due to whitefish eggs', Foodborne Pathogens and Disease, Vol. 1, No. 1, pp.53-57.
-
(2004)
Foodborne Pathogens and Disease
, vol.1
, Issue.1
, pp. 53-57
-
-
Lindström, M.1
Hielm, S.2
Nevas, M.3
Tuisku, S.4
Korkeala, H.5
-
26
-
-
83155173394
-
Analysis of Clostridium botulinum serotype e strains by using multilocus sequence typing, amplified fragment length polymorphism, variable-number tandem-repeat analysis, and botulinum neurotoxin gene sequencing
-
Macdonald, T.E., Helma, C.H., Shou, Y., Valdez, Y.E., Ticknor, L.O., Foley, B.T., Davis, S.W., Hannett, G.E., Kelly-Cirino, C.D., Barash, J.R., Arnon, S.S., Lindström, M., Korkeala, H., Smith, L.A., Smith, T.J. and Hill, K.K. (2011) 'Analysis of Clostridium botulinum serotype E strains by using multilocus sequence typing, amplified fragment length polymorphism, variable-number tandem-repeat analysis, and botulinum neurotoxin gene sequencing', Applied and Environmental Microbiology, Vol. 77, No. 24, pp.8625-8634.
-
(2011)
Applied and Environmental Microbiology
, vol.77
, Issue.24
, pp. 8625-8634
-
-
Macdonald, T.E.1
Helma, C.H.2
Shou, Y.3
Valdez, Y.E.4
Ticknor, L.O.5
Foley, B.T.6
Davis, S.W.7
Hannett, G.E.8
Kelly-Cirino, C.D.9
Barash, J.R.10
Arnon, S.S.11
Lindström, M.12
Korkeala, H.13
Smith, L.A.14
Smith, T.J.15
Hill, K.K.16
-
27
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies, M., Egholm, M., Altman, W.E., Attiya, S., Bader, J.S., Bemben, L.A., Berka, J., Braverman, M.S., Chen, Y.J., Chen, Z., Dewell, S.B., Du, L., Fierro, J.M., Gomes, X.V., Godwin, B.C., He, W., Helgesen, S., Ho, C.H., Irzyk, G.P., Jando, S.C., Alenquer, M.L., Jarvie, T.P., Jirage, K.B., Kim, J.B., Knight, J.R., Lanza, J.R., Leamon, J.H., Lefkowitz, S.M., Lei, M., Li, J., Lohman, K.L., Lu, H., Makhijani, V.B., McDade, K.E., McKenna, M.P., Myers, E.W., Nickerson, E., Nobile, J.R., Plant, R., Puc, B.P., Ronan, M.T., Roth, G.T., Sarkis, G.J., Simons, J.F., Simpson, J.W., Srinivasan, M., Tartaro, K.R., Tomasz, A., Vogt, K.A., Volkmer, G.A., Wang, S.H., Wang, Y., Weiner, M.P., Yu, P., Begley, R.F., Rothberg, J.M. (2005) 'Genome sequencing in microfabricated high-density picolitre reactors', Nature, Vol. 437, No. 7057, pp.376-380.
-
(2005)
Nature
, vol.437
, Issue.7057
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.J.9
Chen, Z.10
Du Dewell, S.B.L.11
Fierro, J.M.12
Gomes, X.V.13
Godwin, B.C.14
He, W.15
Helgesen, S.16
Ho, C.H.17
Irzyk, G.P.18
Jando, S.C.19
Alenquer, M.L.20
Jarvie, T.P.21
Jirage, K.B.22
Kim, J.B.23
Knight, J.R.24
Lanza, J.R.25
Leamon, J.H.26
Lefkowitz, S.M.27
Lei, M.28
Li, J.29
Lohman, K.L.30
Lu, H.31
Makhijani, V.B.32
McDade, K.E.33
McKenna, M.P.34
Myers, E.W.35
Nickerson, E.36
Nobile, J.R.37
Plant, R.38
Puc, B.P.39
Ronan, M.T.40
Roth, G.T.41
Sarkis, G.J.42
Simons, J.F.43
Simpson, J.W.44
Srinivasan, M.45
Tartaro, K.R.46
Tomasz, A.47
Vogt, K.A.48
Volkmer, G.A.49
Wang, S.H.50
Wang, Y.51
Weiner, M.P.52
Yu, P.53
Begley, R.F.54
Rothberg, J.M.55
more..
-
28
-
-
27444438599
-
The microbial pan-genome
-
Medini, D., Donati, C., Tettelin, H., Masignani, V. and Rappuoli, R. (2005) 'The microbial pan-genome', Current Opinion in Genetics &Development, Vol. 15, No. 6, pp.589-594.
-
(2005)
Current Opinion in Genetics &development
, vol.15
, Issue.6
, pp. 589-594
-
-
Medini, D.1
Donati, C.2
Tettelin, H.3
Masignani, V.4
Rappuoli, R.5
-
29
-
-
0030725161
-
The cold shock response of the psychrotrophic bacterium Pseudomonas fragi involves four low-molecular-mass nucleic acid-binding proteins
-
Michel, V., Lehoux, I., Depret, G., Anglade, P., Labadie, J. and Hebraud, M. (1997) 'The cold shock response of the psychrotrophic bacterium Pseudomonas fragi involves four low-molecular-mass nucleic acid-binding proteins', Journal of Bacteriology, Vol. 179, No. 23, pp.7331-7342.
-
(1997)
Journal of Bacteriology
, vol.179
, Issue.23
, pp. 7331-7342
-
-
Michel, V.1
Lehoux, I.2
Depret, G.3
Anglade, P.4
Labadie, J.5
Hebraud, M.6
-
30
-
-
76549101962
-
Eukaryotic cold shock domain proteins: Highly versatile regulators of gene expression
-
Mihailovich, M., Militti, C., Gabaldon, T. and Gebauer, F. (2010) 'Eukaryotic cold shock domain proteins: highly versatile regulators of gene expression', Bioessays, Vol. 32, No. 2, pp.109-118.
-
(2010)
Bioessays
, vol.32
, Issue.2
, pp. 109-118
-
-
Mihailovich, M.1
Militti, C.2
Gabaldon, T.3
Gebauer, F.4
-
31
-
-
74949092456
-
Adaptation of enteropathogenic Yersinia to low growth temperature
-
Palonen, E., Lindström, M. and Korkeala, H. (2010) 'Adaptation of enteropathogenic Yersinia to low growth temperature', Critical Reviews in Microbiology, Vol. 36, No. 1, pp.54-67.
-
(2010)
Critical Reviews in Microbiology
, vol.36
, Issue.1
, pp. 54-67
-
-
Palonen, E.1
Lindström, M.2
Korkeala, H.3
-
32
-
-
30544443489
-
A comparative genomic view of clostridial sporulation and physiology
-
Paredes, C.J., Alsaker, K.V. and Papoutsakis, E.T. (2005) 'A comparative genomic view of clostridial sporulation and physiology', Nature Reviews Microbiology, Vol. 3, No. 12, pp.969-978.
-
(2005)
Nature Reviews Microbiology
, vol.3
, Issue.12
, pp. 969-978
-
-
Paredes, C.J.1
Alsaker, K.V.2
Papoutsakis, E.T.3
-
33
-
-
0035142067
-
Role of CspC and CspE in regulation of expression of RpoS and UspA, the stress response proteins in Escherichia coli
-
Phadtare, S. and Inouye, M. (2001) 'Role of CspC and CspE in regulation of expression of RpoS and UspA, the stress response proteins in Escherichia coli', Journal of Bacteriology, Vol. 183, No. 4, pp.1205-1214.
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.4
, pp. 1205-1214
-
-
Phadtare, S.1
Inouye, M.2
-
34
-
-
4944221553
-
Genome-wide transcriptional analysis of the cold shock response in wild-type and cold-sensitive, quadruple-csp-deletion strains of Escherichia coli
-
Phadtare, S. and Inouye, M. (2004) 'Genome-wide transcriptional analysis of the cold shock response in wild-type and cold-sensitive, quadruple-csp- deletion strains of Escherichia coli', Journal of Bacteriology, Vol. 186, No. 20, pp.7007-7014.
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.20
, pp. 7007-7014
-
-
Phadtare, S.1
Inouye, M.2
-
35
-
-
13244252316
-
Visualization of comparative genomic analyses by BLAST score ratio
-
doi 10.1186/1471-2105/6/2
-
Rasko, D.A., Myers, G.S. and Ravel, J. (2005) 'Visualization of comparative genomic analyses by BLAST score ratio', BMC Bioinformatics, Vol. 6, p.2, doi10.1186/1471-2105/6/2.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 2
-
-
Rasko, D.A.1
Myers, G.S.2
Ravel, J.3
-
36
-
-
53849104729
-
The pangenome structure of Escherichia coli: Comparative genomic analysis of E. coli commensal and pathogenic isolates
-
Rasko, D.A., Rosovitz, M.J., Myers, G.S., Mongodin, E.F., Fricke, W.F., Gajer, P., Crabtree, J., Sebaihia, M., Thomson, N.R., Chaudhuri, R., Henderson, I.R., Sperandio, V. and Ravel, J. (2008) 'The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates', Journal of Bacteriology, Vol. 190, No. 20, pp.6881-6893.
-
(2008)
Journal of Bacteriology
, vol.190
, Issue.20
, pp. 6881-6893
-
-
Rasko, D.A.1
Rosovitz, M.J.2
Myers, G.S.3
Mongodin, E.F.4
Fricke, W.F.5
Gajer, P.6
Crabtree, J.7
Sebaihia, M.8
Thomson, N.R.9
Chaudhuri, R.10
Henderson, I.R.11
Sperandio, V.12
Ravel, J.13
-
37
-
-
78650114015
-
Analysis of ultra low genome conservation in Clostridium difficile
-
Scaria, J., Ponnala, L., Janvilisri, T., Yan, W., Mueller, L.A. and Chang, Y-F. (2010) 'Analysis of ultra low genome conservation in Clostridium difficile', PLoS ONE, Vol. 5, No. 12, p.e15147.
-
(2010)
PLoS ONE
, vol.5
, Issue.12
-
-
Scaria, J.1
Ponnala, L.2
Janvilisri, T.3
Yan, W.4
Mueller, L.A.5
Chang, Y.-F.6
-
38
-
-
34347395377
-
Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes
-
Sebaihia, M., Peck, M.W., Minton, N.P., Thomson, N.R., Holden, M.T., Mitchell, W.J., Carter, A.T., Bentley, S.D., Mason, D.R., Crossman, L., Paul, C.J., Ivens, A., Wells-Bennik, M.H., Davis, I.J., Cerdeno-Tarraga, A.M., Churcher, C., Quail, M.A., Chillingworth, T., Feltwell, T., Fraser, A., Goodhead, I., Hance, Z., Jagels, K., Larke, N., Maddison, M., Moule, S., Mungall, K., Norbertczak, H., Rabbinowitsch, E., Sanders, M., Simmonds, M., White, B., Whithead, S. and Parkhill, J. (2007) 'Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes', Genome Research, Vol. 17 No. 7, pp.1082-1092.
-
(2007)
Genome Research
, vol.17
, Issue.7
, pp. 1082-1092
-
-
Sebaihia, M.1
Peck, M.W.2
Minton, N.P.3
Thomson, N.R.4
Holden, M.T.5
Mitchell, W.J.6
Carter, A.T.7
Bentley, S.D.8
Mason, D.R.9
Crossman, L.10
Paul, C.J.11
Ivens, A.12
Wells-Bennik, M.H.13
Davis, I.J.14
Cerdeno-Tarraga, A.M.15
Churcher, C.16
Quail, M.A.17
Chillingworth, T.18
Feltwell, T.19
Fraser, A.20
Goodhead, I.21
Hance, Z.22
Jagels, K.23
Larke, N.24
Maddison, M.25
Moule, S.26
Mungall, K.27
Norbertczak, H.28
Rabbinowitsch, E.29
Sanders, M.30
Simmonds, M.31
White, B.32
Whithead, S.33
Parkhill, J.34
more..
-
39
-
-
23944472235
-
Sequence variation within botulinum neurotoxin serotypes impacts antibody binding and neutralization
-
Smith, T.J., Lou, J., Geren, I.N., Forsyth, C.M., Tsai, R., Laporte, S.L., Tepp, W.H., Bradshaw, M., Johnson, E.A., Smith, L.A. and Marks, J.D. (2005) 'Sequence variation within botulinum neurotoxin serotypes impacts antibody binding and neutralization', Infection and Immunity, Vol. 73, No. 9, pp.5450-5457.
-
(2005)
Infection and Immunity
, vol.73
, Issue.9
, pp. 5450-5457
-
-
Smith, T.J.1
Lou, J.2
Geren, I.N.3
Forsyth, C.M.4
Tsai, R.5
Laporte, S.L.6
Tepp, W.H.7
Bradshaw, M.8
Johnson, E.A.9
Smith, L.A.10
Marks, J.D.11
-
40
-
-
79953050771
-
CspB encodes a major cold shock protein in Clostridium botulinum ATCC 3502
-
Söderholm, H., Lindström, M., Somervuo, P., Heap, J., Minton, N., Lindén, J. and Korkeala, H. (2011) 'cspB encodes a major cold shock protein in Clostridium botulinum ATCC 3502', International Journal of Food Microbiology, Vol. 146, No. 1, pp.23-30.
-
(2011)
International Journal of Food Microbiology
, vol.146
, Issue.1
, pp. 23-30
-
-
Söderholm, H.1
Lindström, M.2
Somervuo, P.3
Heap, J.4
Minton, N.5
Lindén, J.6
Korkeala, H.7
-
41
-
-
25444524604
-
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial 'pan-genome'
-
Tettelin, H., Masignani, V., Cieslewicz, M.J., Donati, C., Medini, D., Ward, N.L., Angiuoli, S.V., Crabtree, J., Jones, A.L., Durkin, A.S., Deboy, R.T., Davidsen, T.M., Mora, M., Scarselli, M., Margarit y Ros, I., Peterson, J.D., Hauser, C.R., Sundaram, J.P., Nelson, W.C., Madupu, R., Brinkac, L.M., Dodson, R.J., Rosovitz, M.J., Sullivan, S.A., Daugherty, S.C., Haft, D.H., Selengut, J., Gwinn, M.L., Zhou, L., Zafar, N., Khouri, H., Radune, D., Dimitrov, G., Watkins, K., O'Connor, K.J., Smith, S., Utterback, T.R., White, O., Rubens, C.E., Grandi, G., Madoff, L.C., Kasper, D.L., Telford, J.L., Wessels, M.R., Rappuoli, R. and Fraser, C.M. (2005) 'Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial 'pan-genome'', Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 39, pp.13950-13955.
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.39
, pp. 13950-13955
-
-
Tettelin, H.1
Masignani, V.2
Cieslewicz, M.J.3
Donati, C.4
Medini, D.5
Ward, N.L.6
Angiuoli, S.V.7
Crabtree, J.8
Jones, A.L.9
Durkin, A.S.10
Deboy, R.T.11
Davidsen, T.M.12
Mora, M.13
Scarselli, M.14
Margarit Ros Y, I.15
Peterson, J.D.16
Hauser, C.R.17
Sundaram, J.P.18
Nelson, W.C.19
Madupu, R.20
Brinkac, L.M.21
Dodson, R.J.22
Rosovitz, M.J.23
Sullivan, S.A.24
Daugherty, S.C.25
Haft, D.H.26
Selengut, J.27
Gwinn, M.L.28
Zhou, L.29
Zafar, N.30
Khouri, H.31
Radune, D.32
Dimitrov, G.33
Watkins, K.34
O'Connor, K.J.35
Smith, S.36
Utterback, T.R.37
White, O.38
Rubens, C.E.39
Grandi, G.40
Madoff, L.C.41
Kasper, D.L.42
Telford, J.L.43
Wessels, M.R.44
Rappuoli, R.45
Fraser, C.M.46
more..
-
42
-
-
0036151795
-
Enhanced levels of cold shock proteins in Listeria monocytogenes LO28 upon exposure to low temperature and high hydrostatic pressure
-
Wemekamp-Kamphuis, H.H., Karatzas, A.K., Wouters, J.A. and Abee, T. (2002) 'Enhanced levels of cold shock proteins in Listeria monocytogenes LO28 upon exposure to low temperature and high hydrostatic pressure', Applied and Environmental Microbiology, Vol. 68, No. 2, pp.456-463.
-
(2002)
Applied and Environmental Microbiology
, vol.68
, Issue.2
, pp. 456-463
-
-
Wemekamp-Kamphuis, H.H.1
Karatzas, A.K.2
Wouters, J.A.3
Abee, T.4
-
43
-
-
0025333047
-
Cold shock and DNA binding
-
Wistow, G. (1990) 'Cold shock and DNA binding', Nature, Vol. 344, No. 6269, pp.823-824.
-
(1990)
Nature
, vol.344
, Issue.6269
, pp. 823-824
-
-
Wistow, G.1
-
44
-
-
78049415678
-
Hidden Markov model and its applications in motif findings
-
Bang, H. et al. Eds, series
-
Wu, J. and Xie, J. (2010) 'Hidden Markov model and its applications in motif findings', in Bang, H. et al. (Eds.): Statistical Methods in Molecular Biology, series, Vol. 620, pp.405-416.
-
(2010)
Statistical Methods in Molecular Biology
, vol.620
, pp. 405-416
-
-
Wu, J.1
Xie, J.2
-
45
-
-
0030856635
-
Growth-hase-dependent expression of cspD, encoding a member of the CspA family in Escherichia coli
-
Yamanaka, K. and Inouye, M. (1997) 'Growth-hase-dependent expression of cspD, encoding a member of the CspA family in Escherichia coli', Journal of Bacteriology, Vol. 179, No. 16, pp.5126-5130.
-
(1997)
Journal of Bacteriology
, vol.179
, Issue.16
, pp. 5126-5130
-
-
Yamanaka, K.1
Inouye, M.2
-
46
-
-
0031973901
-
The CspA family in Escherichia coli: Multiple gene duplication for stress adaptation
-
Yamanaka, K., Fang, L. and Inouye, M. (1998) 'The CspA family in Escherichia coli: multiple gene duplication for stress adaptation', Molecular Microbiology, Vol. 27, No. 2, pp.247-255.
-
(1998)
Molecular Microbiology
, vol.27
, Issue.2
, pp. 247-255
-
-
Yamanaka, K.1
Fang, L.2
Inouye, M.3
|