Genomewide transcriptional analysis of the cold shock response in Bacillus subtilis

Journal of Bacteriology

Volumn 184, Issue 22, 2002, Pages 6395-6402

  Beckering, Carsten L ^a   Steil, Leif ^a   Weber, Michael H W ^a   Völker, Uwe ^a   Marahiel, Mohamed A ^a  

^a PHILIPPS UNIVERSITY MARBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ABC TRANSPORTER; ACYL COENZYME A DESATURASE; ADENOSINE TRIPHOSPHATE; COLD SHOCK PROTEIN; ELONGATION FACTOR; TRANSCRIPTION FACTOR;

AMINO ACID SYNTHESIS; ARTICLE; BACILLUS SUBTILIS; BACTERIAL GENOME; CITRIC ACID CYCLE; COLD ACCLIMATIZATION; COLD STRESS; DELETION MUTANT; GENE CONTROL; GENE IDENTIFICATION; GENETIC TRANSCRIPTION; GLYCOLYSIS; NONHUMAN; OPERON; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN INDUCTION; PURINE SYNTHESIS; PYRIMIDINE SYNTHESIS; SIGNAL TRANSDUCTION;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); POSIBACTERIA;

EID: 0036844248     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.184.22.6395-6402.2002     Document Type: Article

References (43)

1. Aguilar, P. S., J. E. Cronan, Jr., and D. de Mendoza. 1998. A Bacillus subtilis gene induced by cold shock encodes a membrane phospholipid desaturase. J. Bacteriol. 180:2194-2200.
2. Aguilar, P. S., A. M. Hernandez-Arriaga, L. E. Cybulski, A. C. Erazo, and D. de Mendoza. 2001. Molecular basis of thermosensing: A two-component signal transduction thermometer in Bacillus subtilis. EMBO J. 20:1681-1691.
3. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
4. Arnvig, K., B. Hove-Jensen, and R. L. Switzer. 1990. Purification and properties of phosphoribosyl-diphosphate synthetase from Bacillus subtilis. Eur. J. Biochem. 192:195-200.
5. Calogero, S., R. Gardan, P. Glaser, J. Schweizer, G. Rapoport, and M. Debarbouille. 1994. RocR, a novel regulatory protein controlling arginine utilization in Bacillus subtilis, belongs to the NtrC/NifA family of transcriptional activators. J. Bacteriol. 176:1234-1241.
6. Chamot, D., W. C. Magee, E. Yu, and G. W. Owttrim. 1999. A cold shock-induced cyanobacterial RNA helicase. J. Bacteriol. 181:1728-1732.
7. Dammel, C. S., and H. F. Noller. 1995. Suppression of a cold-sensitive mutation in 16S rRNA by overexpression of a novel ribosome-binding factor, RbfA. Genes Dev. 9:626-637.
8. Debarbouille, M., R. Gardan, M. Arnaud, and G. Rapoport. 1999. Role of bkdR, a transcriptional activator of the sigL-dependent isoleucine and valine degradation pathway in Bacillus subtilis. J. Bacteriol. 181:2059-2066.
9. Debarbouille, M., I. Martin-Verstraete, A. Klier, and G. Rapoport. 1991. The transcriptional regulator LevR of Bacillus subtilis has domains homologous to both sigma 54- and phosphotransferase system-dependent regulators. Proc. Natl. Acad. Sci. USA 88:2212-2216.
10. Grau, R., D. Gardiol, G. C. Glikin, and D. de Mendoza. 1994. DNA supercoiling and thermal regulation of unsaturated fatty acid synthesis in Bacillus subtilis. Mol. Microbiol. 11:933-941.
11. Graumann, P., and M. A. Marahiel. 1994. The major cold shock protein of Bacillus subtilis CspB binds with high affinity to the ATTGG- and CCAAT sequences in single stranded oligonucleotides. FEBS Lett. 338:157-160.
12. Graumann, P., K. Schröder, R. Schmid, and M. A. Marahiel. 1996. Cold shock stress-induced proteins in Bacillus subtilis. J. Bacteriol. 178:4611-4619.
13. Graumann, P., T. M. Wendrich, M. H. Weber, K. Schrbder, and M. A. Marahiel. 1997. A family of cold shock proteins in Bacillus subtilis is essential for cellular growth and for efficient protein synthesis at optimal and low temperatures. Mol. Microbiol. 25:741-756.
14. Graumann, P. L., and M. A. Marahiel. 1999. Cold shock response in Bacillus subtilis. J. Mol. Microbiol. Biotechnol. 1:203-209.
15. Graumann, P. L., and M. A. Marahiel. 1998. A superfamily of proteins that contain the cold-shock domain. Trends Biochem. Sci. 23:286-290.
16. Guerout-Fleury, A. M., K. Shazand, N. Frandsen, and P. Stragier. 1995. Antibiotic-resistance cassettes for Bacillus subtilis. Gene 167:335-336.
17. Hoch, J. A., and J. Mathews. 1973. Chromosomal location of pleiotropic sporulation mutations in Bacillus subtilis. Genetics 73:215-228.
18. Huang, M., F. B. Oppermann-Sanio, and A. Steinbüchel. 1999. Biochemical and molecular characterization of the Bacillus subtilis acetoin catabolic pathway. J. Bacteriol. 181:3837-3841.
19. Jones, P. G., M. Mitta, Y. Kim, W. Jiang, and M. Inouye. 1996. Cold shock induces a major ribosomal-associated protein that unwinds double-stranded RNA in Escherichia coli. Proc. Natl. Acad. Sci. USA 93:76-80.
20. Kaan, T., B. Jurgen, and T. Schweder. 1999. Regulation of the expression of the cold shock proteins CspB and CspC in Bacillus subtilis. Mol. Gen. Genet. 262:351-354.
21. Klein, W., M. H. W. Weber, and M. A. Marahiel. 1999. Cold shock response of Bacillus subtilis: Isoleucine-dependent switch in the fatty acid branching pattern for membrane adaptation to low temperatures. J. Bacteriol. 181:5341-5349.
22. Kobayashi, K., M. Ogura, H. Yamaguchi, K.-I. Yoshida, N. Ogasawara, T. Tanaka, and Y. Fujita. 2001. Comprehensive DNA microarray analysis of Bacillus subtilis two-component regulatory systems. J. Bacteriol. 183:7365-7370.
23. Krispin, O., and R. Allmansberger. 1995. Changes in DNA supertwist as a response of Bacillus subtilis towards different kinds of stress. FEMS Microbiol. Lett. 134:129-135.
24. Kushad, M. M., and G. Yelenosky. 1987. Evaluation of polyamine and proline levels during low temperature acclimation of citrus. Plant Physiol. 84:692-695.
25. Kuwayama, H., S. Obara, T, Morio, M. Katoh, H. Urushihara, and Y. Tanaka. 2002. PCR-mediated generation of a gene disruption construct without the use of DNA ligase and plasmid vectors. Nucleic Acids Res. 30:E2.
26. Lim, J., T. Thomas, and R. Cavicchioli. 2000. Low temperature regulated DEAD-box RNA helicase from the Antarctic archaeon, Methanococcoides burtonii. J. Mol. Biol. 297:553-567.
27. Lopez, J. M., and B. Thoms. 1976. Relations between catabolite repression and sporulation in Bacillus subtilis. Arch. Microbiol. 109:181-186.
28. Majumdar, D., Y. J. Avissar, and J. H. Wyche. 1991. Simultaneous and rapid isolation of bacterial and eukaryotic DNA and RNA: A new approach for isolating DNA. BioTechniques 11:94-101.
29. Mascarenhas, J., M. H. Weber, and P. L. Graumann. 2001. Specific polar localization of ribosomes in Bacillus subtilis depends on active transcription. EMBO Rep. 2:685-689.
30. Mogk, A., G. Homuth, C. Scholz, L. Kim, F. X. Schmid, and W. Schumann. 1997. The GroE chaperonin machine is a major modulator of the CIRCE heat shock regulon of Bacillus subtilis. EMBO J. 16:4579-4590.
31. Petersohn, A., M. Brigulla, S. Haas, J. D. Hoheisel, U. Völker, and M. Hecker. 2001. Global analysis of the general stress response of Bacillus subtilis. J. Bacteriol. 183:5617-5631.
32. Schröder, K., P. Graumann, A. Schnuchel, T. A. Holak, and M. A. Marahiel. 1995. Mutational analysis of the putative nucleic acid-binding surface of the cold-shock domain, CspB, revealed an essential role of aromatic and basic residues in binding of single-stranded DNA containing the Y-box motif. Mol. Microbiol. 16:699-708.
33. Serrano, M., S. Hövel, C. P. Moran, Jr., A. O. Henriques, and U. Völker. 2001. Forespore-specific transcription of the lonB gene during sporulation in Bacillus subtilis. J. Bacteriol. 183:2995-3003.
34. Shingler, V. 1996. Signal sensing by sigma 54-dependent regulators: Derepression as a control mechanism. Mol. Microbiol. 19:409-416.
35. Stüber, D., H. Matile, and G. Garotta. 1990. System for high-level production in Escherichia coli and rapid purification of recombinant proteins: Application to epitope mapping, preparation of antibodies, and structure function analysis, p. 121-152. In I. Lefkovits and B. Pernis (ed.), Immunological Methods. Academic Press, Orlando, Fla.
36. Suzuki, I., D. A. Los, Y. Kanesaki, K. Mikami, and N. Murata. 2000. The pathway for perception and transduction of low-temperature signals in Synechocystis. EMBO J. 19:1327-1334.
37. Weber, M. H. W., C. L. Beckering, and M. A. Marahiel. 2001. Complementation of cold shock proteins by translation initiation factor IF1 in vivo. J. Bacteriol. 183:7381-7386.
38. Weber, M. H. W., I. Fricke, N. Doll, and M. A. Marahiel. 2002. CSDBase: An interactive database for cold shock domain-containing proteins and the bacterial cold shock response. Nucleic Acids Res. 30:375-378.
39. Weber, M. H. W., W. Klein, L. Müller, U. M. Niess, and M. A. Marahiel. 2001. Role of the Bacillus subtilis fatty acid desaturase in membrane adaptation during cold shock. Mol. Microbiol. 39:1321-1329.
40. Weber, M. H. W., A. V. Volkov, I. Fricke, M. A. Marahiel, and P. L. Graumann. 2001. Localization of cold shock proteins to cytosolic spaces surrounding nucleoids in Bacillus subtilis depends on active transcription. J. Bacteriol. 183:6435-6443.
41. Wistow, G. 1990. Cold shock and DNA binding. Nature 344:823-824.
42. Yancey, P. H., M. E. Clark, S. C. Hand, R. D. Bowlus, and G. N. Somero. 1982. Living with water stress: Evolution of osmolyte systems. Science 217:1214-1222.
43. Yoshida, K. I., Y. Fujita, and S. D. Ehrlich. 2000. An operon for a putative ATP-binding cassette transport system involved in acetoin utilization of Bacillus subtilis. J. Bacteriol. 182:5454-5461.