Cold-induced putative DEAD box RNA helicases CshA and CshB are essential for cold adaptation and interact with cold shock protein B in Bacillus subtilis

Journal of Bacteriology

Volumn 188, Issue 1, 2006, Pages 240-248

  Hunger, Karen ^a   Beckering, Carsten L ^a   Wiegeshoff, Frank ^a   Graumann, Peter L ^b   Marahiel, Mohamed A ^a  

^a PHILIPPS UNIVERSITY MARBURG   (Germany)

^b UNIVERSITY OF FREIBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CHAPERONE; COLD SHOCK PROTEIN; DEAD BOX RNA HELICASE CSHA; DEAD BOX RNA HELICASE CSHB; RNA HELICASE; UNCLASSIFIED DRUG; COLD SHOCK PROTEIN CSPB, BACTERIA; COLD-SHOCK PROTEIN CSPB, BACTERIA;

ARTICLE; BACILLUS SUBTILIS; BACTERIAL GROWTH; CELL VIABILITY; COLD ACCLIMATIZATION; FLUORESCENCE RESONANCE ENERGY TRANSFER; GENE DELETION; GENE MUTATION; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN FAMILY; PROTEIN LOCALIZATION; PROTEIN SECONDARY STRUCTURE; RNA TRANSLATION; ADAPTATION; CHEMICAL STRUCTURE; CHEMISTRY; COLD; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; HEAT SHOCK RESPONSE; METABOLISM; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; PROTEIN MOTIF;

BACILLUS (BACTERIUM); BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS);

ADAPTATION, PHYSIOLOGICAL; AMINO ACID MOTIFS; BACILLUS SUBTILIS; BACTERIAL PROTEINS; BASE SEQUENCE; COLD; FLUORESCENCE RESONANCE ENERGY TRANSFER; GENE EXPRESSION REGULATION, BACTERIAL; HEAT-SHOCK RESPONSE; MODELS, MOLECULAR; RNA HELICASES;

EID: 33644905316     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.188.1.240-248.2006     Document Type: Article

References (41)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Beckering, C. L., L. Steil, M. H. Weber, U. Voelker, and M. A. Marahiel. 2002. Genomewide transcriptional analysis of the cold shock response in Bacillus subtilis. J. Bacteriol. 184:6395-6402.
3. Broeze, R. J., C. J. Solomon, and D. H. Pope. 1978. Effects of low temperature on in vivo and in vitro protein synthesis in Escherichia coli and Pseudomonas fluorescens. J. Bacteriol. 134:861-874.
4. Chamot, D., W. C. Magee, E. Yu, and G. W. Owttrim. 1999. A cold shock-induced cyanobacterial RNA helicase. J. Bacteriol. 181:1728-1732.
5. Charollais, J., M. Dreyfus, and I. Iost. 2004. CsdA, a cold-shock RNA helicase from Escherichia coli, is involved in the biogenesis of 50S ribosomal subunit. Nucleic Acids Res. 32:2751-2759.
6. Friedman, H., P. Lu, and A. Rich. 1971. Temperature control of initiation of protein synthesis in Escherichia coli. J. Mol. Biol. 61:105-121.
7. Graumann, P., K. Schroeder, R. Schmid, and M. A. Marahiel. 1996. Cold shock stress-induced proteins in Bacillus subtilis. J. Bacteriol. 178:4611-4619.
8. Graumann, P., T. M. Wendrich, M. H. Weber, K. Schroeder, and M. A. Marahiel. 1997. A family of cold shock proteins in Bacillus subtilis is essential for cellular growth and for efficient protein synthesis at optimal and low temperatures. Mol. Microbiol. 25:741-756.
9. Graumann, P. L., and M. A. Marahiel. 1999. Cold shock response in Bacillus subtilis. J. Mol. Microbiol. Biotechnol. 1:203-209.
10. Graumann, P. L., and M. A. Marahiel. 1998. A superfamily of proteins that contain the cold-shock domain. Trends Biochem. Sci. 23:286-290.
11. Guerout-Fleury, A. M., K. Shazand, N. Frandsen, and P. Stragier. 1995. Antibiotic-resistance cassettes for Bacillus subtilis. Gene 167:335-336.
12. Hall, M. N., J. Gabay, M. Debarbouille, and M. Schwarz. 1982. A role for messenger-RNA secondary structure in the control of translation initiation. Nature 295:616-618.
13. Hanna, M. M., and K. Liu. 1998. Nascent RNA in transcription complexes interacts with CspE, a small protein in E. coli implicated in chromatin condensation. J. Mol. Biol. 282:227-239.
14. Herschlag, D. 1995. RNA chaperones and the RNA folding problem. J. Biol. Chem. 270:20871-20874.
15. Jiang, W., Y. Hou, and M. Inouye. 1997. CspA, the major cold-shock protein of Escherichia coli, is an RNA chaperone. J. Biol. Chem. 272:196-202.
16. Jones, P. G., M. Mitta, Y. Kim, W. Jiang, and M. Inouye. 1996. Cold shock induces a major ribosomal-associated protein that unwinds double-stranded RNA in Escherichia coli. Proc. Natl. Acad. Sci. USA 93:76-80.
17. Jones, P. G., R. A. VanBogelen, and F. C. Neidhardt. 1987. Induction of proteins in response to low temperature in Escherichia coli. J. Bacteriol. 169:2092-2095.
18. Kim, L., A. Mogk, and W. Schumann. 1996. A xylose-inducible Bacillus subtilis integration vector and its application. Gene 181:71-76.
19. Lewis, P. J., and A. L. Marston. 1999. GFP vectors for controlled expression and dual labelling of protein fusions in Bacillus subtilis. Gene 227:101-110.
20. Lim, J., T. Thomas, and R. Cavicchioli. 2000. Low temperature regulated DEAD-box RNA helicase from the Antarctic archaeon, Methanococcoides burtonii. J. Mol. Biol. 297:553-567.
21. Lorsch, J. R. 2002. RNA chaperones exist and DEAD box proteins get a life. Cell 109:797-800.
22. Lu, J., H. Aoki, and M. C. Ganoza. 1999. Molecular characterization of a prokaryotic translation factor homologous to the eukaryotic initiation factor eIF4A. Int. J. Biochem. Cell. Biol. 31:215-229.
23. Luking, A., U. Stahl, and U. Schmidt. 1998. The protein family of RNA helicases. Crit. Rev. Biochem. Mol. Biol. 33:259-296.
24. Mascarenhas, J., M. H. Weber, and P. L. Graumann. 2001. Specific polar localization of ribosomes in Bacillus subtilis depends on active transcription. EMBO Rep. 2:685-689.
25. Matroule, J. Y., H. Lam, D. T. Burnette, and C. Jacobs-Wagner. 2004. Cytokinesis monitoring during development; rapid pole-to-poie shuttling of a signaling protein by localized kinase and phosphatase in Caulobacter. Cell 118:579-590.
26. Miller, J. 1972. A short course in bacterial genetics. A laboratory manual and handbook for Escherichia coli and related bacteria. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
27. Phadtare, S., J. Alsina, and M. Inouye. 1999. Cold-shock response and cold-shock proteins. Curr. Opin. Microbiol. 2:175-180.
28. Phadtare, S., and M. Inouye. 1999. Sequence-selective interactions with RNA by CspB, CspC and CspE, members of the CspA family of Escherichia coli. Mol. Microbiol. 33:1004-1014.
29. Prud'homme-Genereux, A., R. K. Beran, I. Iost, C. S. Ramey, G. A. Mackie, and R. W. Simons. 2004. Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: evidence for a 'cold shock degradosome.' Mol. Microbiol. 54:1409-1421.
30. Schindelin, H., M. A. Marahiel, and U. Heinemann. 1993. Universal nucleic acid-binding domain revealed by crystal structure of the B. subtilis major cold-shock protein. Nature 364:164-168.
31. Schmid, S. R., and P. Linder. 1992. DEAD protein family of putative RNA helicases. Mol. Microbiol. 6:238-292.
32. Schroeder, K., P. Graumann, A. Schnuchel, T. A. Holak, and M. A. Marahiel. 1995. Mutational analysis of the putative nucleic acid-binding surface of the cold-shock domain, CspB, revealed an essential role of aromatic and basic residues in binding of single-stranded DNA containing the Y-box motif. Mol. Microbiol. 16:699-708.
33. Sommerville, J. 1999. Activities of cold-shock domain proteins in translation control. Bioessays 21:319-325.
34. Sourjik, V., and H. C. Berg. 2002. Binding of the Escherichia coli response regulator CheY to its target measured in vivo by fluorescence resonance energy transfer. Proc. Natl. Acad. Sci. USA. 99:12669-12674.
35. Spizizen, J. 1958. Transformation of biochemically deficient strains of Bacillus subtilis by deoxyribonucleate. Proc. Natl. Acad. Sci. USA 44:407-408.
36. Steinmetz, M., and R. Richter. 1994. Plasmids designed to alter the antibiotic resistance expressed by insertion mutations in Bacillus subtilis, through in vivo recombination. Gene 142:79-83.
37. Tanner, N. K., and P. Linder. 2001. DExD/H box RNA helicases: from generic motors to specific dissociation functions. Mol. Cell 8:251-262.
38. Weber, M. H., C. L. Beckering, and M. A. Marahiel. 2001. Complementation of cold shock proteins by translation initiation factor IF1 in vivo. J. Bacteriol. 183:7381-7386.
39. Weber, M. H., and M. A. Marahiel. 2003. Bacterial cold shock responses. Sci. Prog. 86:9-75.
40. Weber, M. H., A. V. Volkov, I. Fricke, M. A. Marahiel, and P. L. Graumann. 2001. Localization of cold shock proteins to cytosolic spaces surrounding nucleoids in Bacillus subtilis depends on active transcription. J. Bacteriol. 183:6435-6443.
41. Wolffe, A. P., S. Tafuri, M. Ranjan, and M. Familari. 1992. The Y-box factors: a family of nucleic acid binding proteins conserved from Escherichia coli to man. New Biol. 4:290-298.