Iron-sulphur clusters and the problem with oxygen

Molecular Microbiology

Volumn 59, Issue 4, 2006, Pages 1073-1082

  Imlay, James A ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANION; ANTIOXIDANT; CATION; IRON SULFUR PROTEIN; NITROGEN; OXIDIZING AGENT; OXYGEN; POLYPEPTIDE;

AEROBIC BACTERIA; ANAEROBIC BACTERIUM; ANAEROBIC METABOLISM; ASTRONOMY; ATMOSPHERE; BIOAVAILABILITY; CHEMICAL INTERACTION; COMPLEX FORMATION; CRYSTALLIZATION; DECOMPOSITION; ECOLOGY; ELECTRON TRANSPORT; EXPOSURE; GENE CLUSTER; LIFE; METABOLITE; MOLECULAR STABILITY; NONHUMAN; OXIDATIVE STRESS; OXYGENATION; PATHOGENESIS; PHOTOSYNTHESIS; PRIORITY JOURNAL; PROTEIN STRUCTURE; SHORT SURVEY; SPECIES HABITAT; SURFACE PROPERTY; THREAT;

ANAEROBIOSIS; BACTERIAL PROTEINS; EVOLUTION, MOLECULAR; IRON; IRON-SULFUR PROTEINS; OXIDANTS; OXYGEN;

BACTERIA (MICROORGANISMS);

EID: 33645065589     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2006.05028.x     Document Type: Short Survey

References (69)

1. Alen C. Sonenshein AL. 1999 Bacillus subtilis aconitase is an RNA-binding protein Proc Natl Acad Sci USA 96 10412 10417
2. Babini E. Borsari M. Capozzi F. Eltis LD. Luchinat C. 1999 Experimental evidence for the role of buried polar groups in determining the reduction potential of metalloproteins: the S79P variant of Chromatium vinosum HiPIP J Biol Inorg Chem 4 692 700
3. Benov L. Fridovich I. 1999 Why superoxide imposes an aromatic amino acid auxotrophy on Escherichia coli. The transketolase connection J Biol Chem 274 4202 4206
4. Berkovitch F. Nicolet Y. Wan JT. Jarrett JT. Drennan CL. 2004 Crystal structure of biotin synthase, an S-adenosylmethionine-dependent radical enzyme Science 303 76 79
5. Bertini I. Cowan JA. Luchinat C. Natarajan K. Piccioli M. 1997 Characterization of a partially unfolded high potential iron protein Biochemistry 36 9332 9339
6. Bjerrum CJ. Canfield DE. 2002 Ocean productivity before about 1.9 Gyr ago limited by phosphorus adsorption onto iron oxides Nature 417 159 162
7. Boehme DE. Vincent K. Brown OR. 1976 Oxygen and toxicity: inhibition of amino acid biosynthesis Nature 262 418 420
8. Bossi RT. Negri A. Tedeschi G. Mattevi A. 2002 Structure of FAD-bound l-aspartate oxidase: insight into substrate specificity and catalysis Biochemistry 41 3018 3024
9. Brickman TJ. McIntosh MA. 1992 Overexpression and purification of ferric enterobactin esterase from Escherichia coli. Demonstration of enzymatic hydrolysis of enterobactin and its iron complex J Biol Chem 267 12350 12355
10. Canfield DE. Habicht KS. Thamdrup B. 2000 The archean sulfur cycle and the early history of atmospheric oxygen Science 288 658 661
11. Capozzi F. Ciurli S. Luchinat C. 1998 Coordination sphere versus protein environment as determinants of electronic and functional properties of iron-sulfur proteins Struct Bonding 90 127 160
12. Carlioz A. Touati D. 1986 Isolation of superoxide dismutase mutants in Escherichia coli: is superoxide dismutase necessary for aerobic life? EMBO J 5 623 630
13. Chabriere E. Charon MH. Volbeda A. Pieulle L. Hatchikian EC. Fontecilla-Camps JC. 1999 Crystal structures of the key anaerobic enzyme pyruvate: ferredoxin oxidoreductase, free and in complex with pyruvate Nat Struct Biol 6 182 190
14. Chen D. Walsby C. Hoffman BM. Frey PA. 2003 Coordination and mechanism of reversible cleavage of S-adenosylmethionine by the [4Fe-4S] center in lysine 2,3-aminomutase J Am Chem Soc 125 11788 11789
15. Ding H. Demple B. 1997 In vivo kinetics of a redox-regulated transcriptional switch Proc Natl Acad Sci USA 94 8445 8449
16. 2 by a molybdenum-CO dehydrogenase J Biol Chem 272 26627 26633
17. Flint DH. Emptage MH. 1990 Dihydroxyacid dehydratase: isolation, characterization as Fe-S proteins, and sensitivity to inactivation by oxygen radicals In Biosynthesis of Branched Chain Amino Acids Barak Z. Chipman D. Schloss JV. (eds). New York VCH Publishers pp. 285 314
18. Flint DH. Tuminello JF. Emptage MH. 1993 The inactivation of Fe-S cluster containing hydro-lyases by superoxide J Biol Chem 268 22369 22376
19. Flo TH. Smith KD. Sato S. Rodriguez DJ. Holmes MA. Strong RK. et al. 2004 Lipocalin 2 mediates an innate immune response to bacterial infection by sequestrating iron Nature 432 917 921
20. Frey M. 2002 Hydrogenases: hydrogen-activating enzymes Chembiochem 2002 153 160
21. Gardner PR. Fridovich I. 1991 Superoxide sensitivity of the Escherichia coli aconitase J Biol Chem 266 19328 19333
22. Gaudu P. Moon N. Weiss B. 1997 Regulation of the soxRS oxidative stress regulon. Reversible oxidation of the Fe-S center of SoxR in vivo J Biol Chem 272 5082 5086
23. Goldstein S. Meyerstein D. Czapski G. 1993 The Fenton reagents Free Rad Biol Med 15 435 445
24. Golinelli M-P. Chatelet C. Duin EC. Johnson MK. Meyer J. 1998 Extensive ligand rearrangements around the [2Fe-2S] cluster of Clostridium pasteurianum ferredoxin Biochemistry 37 10429 10437
25. Gort AS. Imlay JA. 1998 Balance between endogenous superoxide stress and antioxidant defenses J Bacteriol 180 1402 1410
26. Grimek TL. Escalante-Semerena JC. 2004 The acnD genes of Shewenella oneidensis and Vibrio cholerae encode a new Fe-S-dependent 2-methylcitrate dehydratase enzyme that requires prpF function in vivo J Bacteriol 186 454 462
27. Gruer MJ. Guest JR. 1994 Two genetically-distinct and differentially-regulated aconitases (AcnA and AcnB) in Escherichia coli Microbiology 140 2531 2541
28. Helmann JD. Wu MF. Gaballa A. Kobel PA. Morshedi MM. Fawcett P. Paddon C. 2003 The global transcriptional response of Bacillus subtilis to peroxide stress is coordinated by three transcription factors J Bacteriol 185 243 253
29. Inbaraj JJ. Chignell CF. 2004 Cytotoxic action of juglone and plumbagin: a mechanistic study using HaCaT keratinocytes Chem Res Toxicol 17 55 62
30. Iverson TM. Luna-Chavez C. Cecchini G. Rees DC. 1999 Structure of the Escherichia coli fumarate reductase respiratory complex Science 284 1961 1966
31. Jarrett JT. 2005 The novel structure and chemistry of iron-sulfur clusters in the adenosylmenthionine-dependent radical enzyme biotin synthase Arch Biochim Biophys 433 312 321
32. Jenney FE. Verhagen MFJM. Cui X. Adams MWW. 1999 Anaerobic microbes: oxygen detoxification without superoxide dismutase Science 286 306 309
33. Johnson D. Dean DR. Smith AD. Johnson MK. 2005 Structure, function, and formation of biological iron-sulfur clusters Ann Rev Biochem 74 247 281
34. Kaptain S. Downey WE. Tang C. Philpott C. Haile D. Orloff DG. et al. 1991 A regulated RNA binding protein also possesses aconitase activity Proc Natl Acad Sci USA 88 10109 10113
35. Keyer K. Imlay JA. 1996 Superoxide accelerates DNA damage by elevating free-iron levels Proc Natl Acad Sci USA 93 13635 13640
36. 2: [4Fe-4S] to [2Fe-2S] conversion with loss of biological activity Proc Natl Acad Sci USA 94 6087 6092
37. Kim J. Hetzel M. Boiangiu CD. Buckel W. 2004 Dehydration of (R)-2-hydroxyacyl-CoA to enoyl-CoA in the fermentation of α-amino acids by anaerobic bacteria FEMS Micro Rev 28 455 468
38. Kuo CF. Mashino T. Fridovich I. 1987 α,β-dihydroxyisovalerate dehydratase: a superoxide-sensitive enzyme J Biol Chem 262 4724 4727
39. Lauble H. Kennedy MC. Beinert H. Stout CD. 1992 Crystal structures of aconitase with isocitrate and nitroisocitrate bound Biochemistry 31 2735 2748
40. Layer G. Moser J. Heinz DW. Jahn D. Schubert W-D. 2003 Crystal structure of coproporphyrinogen III oxidase reveals cofactor geometry of radical SAM enzymes EMBO J 22 6214 6224
41. Liochev SI. Fridovich I. 1992 Fumarase C, the stable fumarase of Escherichia coli, is controlled by the soxRS regulon Proc Natl Acad Sci USA 89 5892 5896
42. Liochev SI. Fridovich I. 1994 The role of superoxide in the production of hydroxyl radical: in vitro and in vivo Free Rad Biol Med 16 29 33
43. Lombard M. Fontecave M. Touati D. Niviere V. 2000 Reaction of the desulfoferrodoxin from Desulfoarculus baarsii with superoxide anion. Evidence for a superoxide reductase activity J Biol Chem 275 115 121
44. McHugh JP. Rodrigues-Quinones F. Abdul-Tehrani H. Svistunenko DA. Poole RK. Cooper CE. Andrews SC. 2003 Global iron-dependent gene regulation in Escherichia coli J Biol Chem 278 29478 29486
45. Martins BM. Dobbek H. Cinkaya I. Buckel W. Messerschmidt A. 2004 Crystal structure of 4-hydroxybutyryl-CoA dehydratase: radical catalysis involving a [4Fe-4S] cluster and flavin Proc Natl Acad Sci USA 101 15645 15649
46. Masse E. Gottesman S. 2002 A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli Proc Natl Acad Sci USA 99 4620 4625
47. Naqui A. Chance B. 1986 Reactive oxygen intermediates in biochemistry Annu Rev Biochem 55 137 166
48. Neilands JB. 1993 Siderophores Arch Biochem Biophys 302 1 3
49. Outten CE. O'Halloran TV. 2001 Femtomolar sensitivity of metalloregulatory proteins controlling zinc homeostasis Science 292 2488 2492
50. Outten FW. Djaman O. Storz G. 2004 A suf operon requirement for Fe-S cluster assembly during iron starvation in Escherichia coli Mol Microbiol 52 861 872
51. Page CC. Moser CC. Dutton PL. 2003 Mechanism for electron transfer within and between proteins Curr Opin Chem Biol 7 551 556
52. Pan N. Imlay JA. 2001 How does oxygen inhibit central metabolism in the obligate anaerobe Bacteroides thetaiotaomicron? Mol Microbiol 39 1562 1571
53. - mutants of Escherichia coli Proc Natl Acad Sci USA 102 9317 9322
54. Peters JW. Lanzilotta WN. Lemon BJ. Seefeldt LC. 1998 X-ray crystal structure of the Fe-only hydrogenase (CpI) from Clostridium pasteurianum to 1.8 Angstrom resolution Science 282 1853 1858
55. Pieulle L. Magro V. Hatchikian EC. 1997 Isolation and analysis of the gene encoding the pyruvate-ferredoxin oxidoreductase of Desulfovibrio africanus, production of the recombinant enzyme in Escherichia coli, and effect of carboxy-terminal deletions on its stability J Bacteriol 179 5684 5692
56. Plank DW. Kennedy MC. Beinert H. Howard JB. 1989 Cysteine labeling studies of beef heart aconitase containing a 4Fe, a cubane 3Fe, or a linear 3Fe cluster J Biol Chem 264 20385 20393
57. Puig S. Askeland F. Thiele DJ. 2005 Coordinated remodeling of cellular metabolism during iron deficiency through targeted mRNA degradation Cell 120 99 110
58. Ran H. Hassett DJ. Lau GW. 2003 Human targets of Pseudomonas aeruginosa pyocyanin Proc Natl Acad Sci USA 100 14315 14320
59. Rao PV. Holm RH. 2004 Synthetic analogues of the active sites of iron-sulfur proteins Chem Rev 104 527 559
60. Rees DC. 2002 Great metalloclusters in enzymology Ann Rev Biochem 71 221 246
61. Seaver LC. Imlay JA. 2001 Hydrogen peroxide fluxes and compartmentalization inside growing Escherichia coli J Bacteriol 183 7182 7189
62. Tang Y. Guest JR. 1999 Direct evidence for mRNA binding and post-transcriptional regulation by Escherichia coli aconitases Microbiology 145 3069 3079
63. Tokumoto U. Kitamura S. Fukuyama K. Takahashi Y. 2004 Interchageability and distinct properties of bacterial Fe-S cluster assembly systems: functional replacement of the isc and suf operons in Escherichia coli with the nifSU-like operon from Helicobacter pylori J Biochem (Tokyo) 136 199 209
64. Varghese SM. Tang Y. Imlay JA. 2003 Contrasting sensitivities of Escherichia coli aconitases A and B to oxidation and iron depletion J Bacteriol 185 221 230
65. Wandersman C. Delepelaire P. 2004 Bacterial iron sources: from siderophores to hemophores Ann Rev Microbiol 58 611 647
66. Ward PP. Conneely OM. 2004 Lactoferrin: role in iron homeostasis and host defense against microbial infection Biometals 17 203 208
67. Wiener MC. 2005 TonB-dependent outer membrane transport: going for Baroque? Curr Opin Struct Biol 15 294 400
68. Yankovskaya V. Horsefield R. Tornroth S. Luna-Chavez C. Miyoshi H. Leger C. et al. 2003 Architecture of succinate dehydrogenase and reactive oxygen species generation Science 299 700 704
69. Zheng M. Wang X. Templeton LJ. Smulski DR. LaRossa RA. Storz G. 2001 DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide J Bacteriol 183 4562 4570