-
1
-
-
0035687492
-
Identifying differentially expressed genes in cDNA microarray experiments
-
Baggerly,K.A. et al. (2001) Identifying differentially expressed genes in cDNA microarray experiments. J. Comput. Biol., 8, 639-659.
-
(2001)
J. Comput. Biol
, vol.8
, pp. 639-659
-
-
Baggerly, K.A.1
-
2
-
-
0034518156
-
Processing and quality control of DNA array hybridization data
-
Beißbarth,T. et al. (2000) Processing and quality control of DNA array hybridization data. Bioinformatics, 16, 1014-1022.
-
(2000)
Bioinformatics
, vol.16
, pp. 1014-1022
-
-
Beißbarth, T.1
-
3
-
-
9444274025
-
Defining signal thresholds in DNA microarrays: Exemplary application for invasive cancer
-
Bilban,M. et al. (2002) Defining signal thresholds in DNA microarrays: Exemplary application for invasive cancer. BMC Genomics 3, 19.
-
(2002)
BMC Genomics
, vol.3
, pp. 19
-
-
Bilban, M.1
-
4
-
-
0742324206
-
Transformations for cDNA microarray data
-
Article
-
Cui,X. et al. (2003) Transformations for cDNA microarray data. Stat. Appl. Genet. Mol. Biol., 2, Article 4.
-
(2003)
Stat. Appl. Genet. Mol. Biol
, vol.2
, pp. 4
-
-
Cui, X.1
-
5
-
-
1842559887
-
Variance-stabilizing transformations for twocolor microarrays
-
Durbin,B.P. and Rocke,D.M. (2004) Variance-stabilizing transformations for twocolor microarrays. Bioinformatics, 20, 660-667.
-
(2004)
Bioinformatics
, vol.20
, pp. 660-667
-
-
Durbin, B.P.1
Rocke, D.M.2
-
6
-
-
0012572299
-
A variance-stabilizing transformation for gene-expression microarray data
-
Durbin,B.P. et al. (2002) A variance-stabilizing transformation for gene-expression microarray data. Bioinformatics, 18 (Suppl. 1), S105-S110.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Durbin, B.P.1
-
7
-
-
0037620675
-
Non-linear normalization and background correction in onechannel cDNA microarray studies
-
Edwards,D. (2003) Non-linear normalization and background correction in onechannel cDNA microarray studies. Bioinformatics, 19, 825-833.
-
(2003)
Bioinformatics
, vol.19
, pp. 825-833
-
-
Edwards, D.1
-
8
-
-
0036164793
-
Microarray data quality analysis: Lessons from the AFGC project
-
Finkelstein,D. et al. (2002) Microarray data quality analysis: lessons from the AFGC project. Plant. Mol. Biol., 48, 119-131.
-
(2002)
Plant. Mol. Biol
, vol.48
, pp. 119-131
-
-
Finkelstein, D.1
-
9
-
-
33644855479
-
Expression profiling in primates reveals a rapid evolution of human transcription factors
-
Gilad,Y. et al. (2006) Expression profiling in primates reveals a rapid evolution of human transcription factors. Nature, 440, 242-245.
-
(2006)
Nature
, vol.440
, pp. 242-245
-
-
Gilad, Y.1
-
10
-
-
33845259378
-
Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis
-
Article
-
Holloway,A.J. et al. (2006) Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis. BMC Bioinformatics, 7, Article 511.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 511
-
-
Holloway, A.J.1
-
11
-
-
11244346557
-
Variance stabilization applied to microarray data calibration and to the quantification of differential expression
-
Huber,W. et al. (2002) Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics, 18 (Suppl. 1), S96-S104.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Huber, W.1
-
12
-
-
0142121516
-
Exploration, normalization and summaries of high density oligonucleotide array probe level data
-
Irizarry,R.A. et al. (2003) Exploration, normalization and summaries of high density oligonucleotide array probe level data. Biostatistics, 4, 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
-
13
-
-
0141924098
-
Transformations, background estimation, and process effects in the statistical analysis of microarrays
-
Kafadar,K. and Phang,T. (2003) Transformations, background estimation, and process effects in the statistical analysis of microarrays. Comput. Stat. Data. Anal., 44, 313-338.
-
(2003)
Comput. Stat. Data. Anal
, vol.44
, pp. 313-338
-
-
Kafadar, K.1
Phang, T.2
-
14
-
-
0036208346
-
Improved background correction for spotted DNA microarrays
-
Kooperberg,C. et al. (2002) Improved background correction for spotted DNA microarrays. J. Comput. Biol., 9, 55-66.
-
(2002)
J. Comput. Biol
, vol.9
, pp. 55-66
-
-
Kooperberg, C.1
-
15
-
-
33749027459
-
Parameter estimation for the exponential-normal convolution model for background correction of Affymetrix GeneChip data
-
Article
-
McGee,M. and Chen,Z. (2006) Parameter estimation for the exponential-normal convolution model for background correction of Affymetrix GeneChip data. Stat. Appl. Genet. Mol. Biol., 5, Article 24.
-
(2006)
Stat. Appl. Genet. Mol. Biol
, vol.5
, pp. 24
-
-
McGee, M.1
Chen, Z.2
-
16
-
-
0034923013
-
On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
-
Newton,M.A. et al. (2001) On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data. J. Comput. Biol., 8, 37-52.
-
(2001)
J. Comput. Biol
, vol.8
, pp. 37-52
-
-
Newton, M.A.1
-
17
-
-
14844353574
-
Identification and functional significance of genes regulated by structurally diverse histone deacetylase inhibitors
-
Peart,M.J. et al. (2005) Identification and functional significance of genes regulated by structurally diverse histone deacetylase inhibitors. Proc. Natl Acad. Sci. USA, 102, 3697-3702.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 3697-3702
-
-
Peart, M.J.1
-
18
-
-
9144268360
-
Empirical evaluation of data transformations and ranking statistics for microarray analysis
-
Qin,L. et al. (2004) Empirical evaluation of data transformations and ranking statistics for microarray analysis. Nucleic Acids Res. 32, 5471-5479.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5471-5479
-
-
Qin, L.1
-
19
-
-
0037606155
-
Approximate variance-stabilizing transformations for gene-expression microarray data
-
Rocke,D.M. and Durbin,B. (2003) Approximate variance-stabilizing transformations for gene-expression microarray data. Bioinformatics 19, 966-972.
-
(2003)
Bioinformatics
, vol.19
, pp. 966-972
-
-
Rocke, D.M.1
Durbin, B.2
-
20
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
Article
-
Smyth,G.K. (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol., 3, Article 3.
-
(2004)
Stat. Appl. Genet. Mol. Biol
, vol.3
, pp. 3
-
-
Smyth, G.K.1
-
21
-
-
33644872577
-
Limma: Linear models for microarray data
-
Gentleman,R. et al, eds, Springer, New York
-
Smyth,G.K. (2005) Limma: Linear models for microarray data. In Gentleman,R. et al. (eds.), Bioinformatics and Computational Biology Solutions using R and Bioconductor. Springer, New York, 397-420.
-
(2005)
Bioinformatics and Computational Biology Solutions using R and Bioconductor
, pp. 397-420
-
-
Smyth, G.K.1
-
22
-
-
18744369640
-
Use of within-array replicate spots for assessing differential expression in microarray experiments
-
Smyth,G.K. et al. (2005) Use of within-array replicate spots for assessing differential expression in microarray experiments. Bioinformatics, 21, 2067-2075.
-
(2005)
Bioinformatics
, vol.21
, pp. 2067-2075
-
-
Smyth, G.K.1
-
23
-
-
18744422885
-
Microarray optimizations: Increasing spot accuracy and automated identification of true microarray signals
-
Tran,P.H. et al. (2002) Microarray optimizations: Increasing spot accuracy and automated identification of true microarray signals. Nucleic Acids Res., 30, e54.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Tran, P.H.1
-
24
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher,V.G. et al. (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl Acad. Sci. USA 98, 5116-5121.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
-
25
-
-
0037167899
-
Within the fold: Assessing differential expression measures and reproducibility in microarray assays
-
Yang,I.V. et al. (2002a) Within the fold: Assessing differential expression measures and reproducibility in microarray assays. Genome Biol., 3, R62.
-
(2002)
Genome Biol
, vol.3
-
-
Yang, I.V.1
-
26
-
-
0035751799
-
Analysis of cDNA microarray images
-
Yang,Y.H. et al. (2001a) Analysis of cDNA microarray images. Brief. Bioinform., 2, 341-349.
-
(2001)
Brief. Bioinform
, vol.2
, pp. 341-349
-
-
Yang, Y.H.1
-
27
-
-
0034869983
-
-
Yang,Y.H. et al. (2001b) Normalization for cDNA microarray data. In Bittner,M.L. et al. (eds.) Microarrays: Optical Technologies and Informatics, 4266 of Proceedings of SPIE.
-
Yang,Y.H. et al. (2001b) Normalization for cDNA microarray data. In Bittner,M.L. et al. (eds.) Microarrays: Optical Technologies and Informatics, Vol 4266 of Proceedings of SPIE.
-
-
-
-
28
-
-
0036004157
-
Comparison of methods for image analysis on cDNA microarray data
-
Yang,Y.H. et al. (2002b) Comparison of methods for image analysis on cDNA microarray data. J. Comput. Graph. Stat., 11, 108-136.
-
(2002)
J. Comput. Graph. Stat
, vol.11
, pp. 108-136
-
-
Yang, Y.H.1
-
29
-
-
19544374529
-
Background correction for cDNA microarray images using the TV + L1 model
-
Yin,W. et al. (2005) Background correction for cDNA microarray images using the TV + L1 model. Bioinformatics, 21, 2410-2416.
-
(2005)
Bioinformatics
, vol.21
, pp. 2410-2416
-
-
Yin, W.1
|