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Volumn 38, Issue 11, 2010, Pages

Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine

Author keywords

[No Author keywords available]

Indexed keywords

5 HYDROXYMETHYLCYTOSINE; 5 METHYLCYTOSINE; BISULFITE; CYTOSINE; DNA FRAGMENT; METHYL CPG BINDING PROTEIN; METHYL CPG BINDING PROTEIN 1; METHYL CPG BINDING PROTEIN 2; METHYL CPG BINDING PROTEIN 4; UNCLASSIFIED DRUG;

EID: 77954362183     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq223     Document Type: Article
Times cited : (366)

References (27)
  • 1
    • 0016439429 scopus 로고
    • DNA modification mechanisms and gene activity during development
    • Holliday, R. and Pugh, J.E. (1975) DNA modification mechanisms and gene activity during development. Science, 187, 226-232.
    • (1975) Science , vol.187 , pp. 226-232
    • Holliday, R.1    Pugh, J.E.2
  • 2
    • 0016692220 scopus 로고
    • X inactivation, differentiation, and DNA methylation
    • Riggs, A.D. (1975) X inactivation, differentiation, and DNA methylation. Cytogenet. Cell. Genet., 14, 9-25.
    • (1975) Cytogenet. Cell. Genet. , vol.14 , pp. 9-25
    • Riggs, A.D.1
  • 3
    • 0033753779 scopus 로고    scopus 로고
    • The DNA methyltransferases of mammals
    • Bestor, T.H. (2000) The DNA methyltransferases of mammals. Hum. Mol. Genet., 9, 2395-2402.
    • (2000) Hum. Mol. Genet. , vol.9 , pp. 2395-2402
    • Bestor, T.H.1
  • 4
    • 33947315736 scopus 로고    scopus 로고
    • Cancer epigenomics: DNA methylomes and histone-modification maps
    • Esteller, M. (2007) Cancer epigenomics: DNA methylomes and histone-modification maps. Nat. Rev. Genet., 8, 286-298.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 286-298
    • Esteller, M.1
  • 5
    • 78049451947 scopus 로고    scopus 로고
    • Methods for genome-wide analysis of DNA methylation in intestinal tumors
    • doi:10.1016/j.mrfmm.2009.10.005
    • Hahn, M.A. and Pfeifer,G.P. (2009) Methods for genome-wide analysis of DNA methylation in intestinal tumors. Mutat. Res., doi:10.1016/j.mrfmm.2009.10.005.
    • (2009) Mutat. Res.
    • Hahn, M.A.1    Pfeifer, G.P.2
  • 6
    • 61449339872 scopus 로고    scopus 로고
    • DNA methylation: an introduction to the biology and the disease-associated changes of a promising biomarker
    • Tost,J. (2009) DNA methylation: an introduction to the biology and the disease-associated changes of a promising biomarker. Methods Mol. Biol., 507, 3-20.
    • (2009) Methods Mol. Biol. , vol.507 , pp. 3-20
    • Tost, J.1
  • 7
    • 66149123748 scopus 로고    scopus 로고
    • The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain
    • Kriaucionis,S. and Heintz,N. (2009) The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science, 324, 929-930.
    • (2009) Science , vol.324 , pp. 929-930
    • Kriaucionis, S.1    Heintz, N.2
  • 10
    • 4043112183 scopus 로고    scopus 로고
    • Oxidative damage to methyl-CpG sequences inhibits the binding of the methyl-CpG binding domain (MBD) of methyl-CpG binding protein 2 (MeCP2)
    • Valinluck,V., Tsai,H.H., Rogstad,D.K., Burdzy,A., Bird,A. and Sowers,L.C. (2004) Oxidative damage to methyl-CpG sequences inhibits the binding of the methyl-CpG binding domain (MBD) of methyl-CpG binding protein 2 (MeCP2). Nucleic Acids Res., 32, 4100-4108.
    • (2004) Nucleic Acids Res , vol.32 , pp. 4100-4108
    • Valinluck, V.1    Tsai, H.H.2    Rogstad, D.K.3    Burdzy, A.4    Bird, A.5    Sowers, L.C.6
  • 11
    • 0024472831 scopus 로고
    • Phylogenetic evidence of a role for 5-hydroxymethyluracil-DNA glycosylase in the maintenance of 5-methylcytosine in DNA
    • Boorstein,R.J., Chiu,L.N. and Teebor,G.W. (1989) Phylogenetic evidence of a role for 5-hydroxymethyluracil-DNA glycosylase in the maintenance of 5-methylcytosine in DNA. Nucleic Acids Res., 17, 7653-7661.
    • (1989) Nucleic Acids Res , vol.17 , pp. 7653-7661
    • Boorstein, R.J.1    Chiu, L.N.2    Teebor, G.W.3
  • 12
    • 0034687768 scopus 로고    scopus 로고
    • An unexpectedly high excision capacity for mispaired 5-hydroxymethyluracil in human cell extracts
    • Rusmintratip,V. and Sowers,L.C. (2000) An unexpectedly high excision capacity for mispaired 5-hydroxymethyluracil in human cell extracts. Proc. Natl Acad. Sci. USA, 97, 14183-14187.
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 14183-14187
    • Rusmintratip, V.1    Sowers, L.C.2
  • 13
    • 0030825309 scopus 로고    scopus 로고
    • COBRA: a sensitive and quantitative DNA methylation assay
    • Xiong,Z. and Laird,P.W. (1997) COBRA: a sensitive and quantitative DNA methylation assay. Nucleic Acids Res., 25, 2532-2534.
    • (1997) Nucleic Acids Res , vol.25 , pp. 2532-2534
    • Xiong, Z.1    Laird, P.W.2
  • 14
    • 23044514626 scopus 로고    scopus 로고
    • Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
    • Weber,M., Davies,J.J., Wittig,D., Oakeley,E.J., Haase,M., Lam,W.L. and Schubeler,D. (2005) Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat. Genet., 37, 853-862.
    • (2005) Nat. Genet. , vol.37 , pp. 853-862
    • Weber, M.1    Davies, J.J.2    Wittig, D.3    Oakeley, E.J.4    Haase, M.5    Lam, W.L.6    Schubeler, D.7
  • 15
    • 10644222635 scopus 로고    scopus 로고
    • MBD3L1 is a transcriptional repressor that interacts with methyl-CpG-binding protein 2 (MBD2) and components of the NuRD complex
    • Jiang,C.L., Jin,S.G. and Pfeifer,G.P. (2004) MBD3L1 is a transcriptional repressor that interacts with methyl-CpG-binding protein 2 (MBD2) and components of the NuRD complex. J. Biol. Chem., 279, 52456-52464.
    • (2004) J. Biol. Chem. , vol.279 , pp. 52456-52464
    • Jiang, C.L.1    Jin, S.G.2    Pfeifer, G.P.3
  • 16
    • 33748055105 scopus 로고    scopus 로고
    • MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells
    • Rauch,T., Li,H., Wu,X. and Pfeifer,G.P. (2006) MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells. Cancer Res., 66, 7939-7947.
    • (2006) Cancer Res , vol.66 , pp. 7939-7947
    • Rauch, T.1    Li, H.2    Wu, X.3    Pfeifer, G.P.4
  • 17
    • 0020480208 scopus 로고
    • Digestion of highly modified bacteriophage DNA by restriction endonucleases
    • Huang,L.H., Farnet,C.M., Ehrlich,K.C. and Ehrlich,M. (1982) Digestion of highly modified bacteriophage DNA by restriction endonucleases. Nucleic Acids Res., 10, 1579-1591.
    • (1982) Nucleic Acids Res , vol.10 , pp. 1579-1591
    • Huang, L.H.1    Farnet, C.M.2    Ehrlich, K.C.3    Ehrlich, M.4
  • 21
    • 0037444026 scopus 로고    scopus 로고
    • The affinity of different MBD proteins for a specific methylated locus depends on their intrinsic binding properties
    • Fraga,M.F., Ballestar,E., Montoya,G., Taysavang,P., Wade,P.A. and Esteller,M. (2003) The affinity of different MBD proteins for a specific methylated locus depends on their intrinsic binding properties. Nucleic Acids Res., 31, 1765-1774.
    • (2003) Nucleic Acids Res , vol.31 , pp. 1765-1774
    • Fraga, M.F.1    Ballestar, E.2    Montoya, G.3    Taysavang, P.4    Wade, P.A.5    Esteller, M.6
  • 22
    • 27744443057 scopus 로고    scopus 로고
    • Methylated-CpG island recovery assay: a new technique for the rapid detection of methylated-CpG islands in cancer
    • Rauch,T. and Pfeifer,G.P. (2005) Methylated-CpG island recovery assay: a new technique for the rapid detection of methylated-CpG islands in cancer. Lab. Invest., 85, 1172-1180.
    • (2005) Lab. Invest. , vol.85 , pp. 1172-1180
    • Rauch, T.1    Pfeifer, G.P.2
  • 24
    • 66749152204 scopus 로고    scopus 로고
    • Prediction of novel families of enzymes involved in oxidative and other complex modifications of bases in nucleic acids
    • Iyer,L.M., Tahiliani,M., Rao,A. and Aravind,L. (2009) Prediction of novel families of enzymes involved in oxidative and other complex modifications of bases in nucleic acids. Cell Cycle, 8, 1698-1710.
    • (2009) Cell Cycle , vol.8 , pp. 1698-1710
    • Iyer, L.M.1    Tahiliani, M.2    Rao, A.3    Aravind, L.4
  • 25
    • 0018796242 scopus 로고
    • Reaction of bisulfite with the 5-hydroxymethyl group in pyrimidines and in phage DNAs
    • Hayatsu,H. and Shiragami,M. (1979) Reaction of bisulfite with the 5-hydroxymethyl group in pyrimidines and in phage DNAs. Biochemistry, 18, 632-637.
    • (1979) Biochemistry , vol.18 , pp. 632-637
    • Hayatsu, H.1    Shiragami, M.2
  • 26
    • 67649510355 scopus 로고    scopus 로고
    • Oxygenase catalyzed 5-methylcytosine hydroxylation
    • Loenarz,C. and Schofield,C.J. (2009) Oxygenase catalyzed 5-methylcytosine hydroxylation. Chem. Biol., 16, 580-583.
    • (2009) Chem. Biol. , vol.16 , pp. 580-583
    • Loenarz, C.1    Schofield, C.J.2
  • 27
    • 0026071587 scopus 로고
    • In vivo mapping of a DNA adduct at nucleotide resolution: detection of pyrimidine (6-4) pyrimidone photoproducts by ligation-mediated polymerase chain reaction
    • Pfeifer,G.P., Drouin,R., Riggs,A.D. and Holmquist,G.P. (1991) In vivo mapping of a DNA adduct at nucleotide resolution: detection of pyrimidine (6-4) pyrimidone photoproducts by ligation-mediated polymerase chain reaction. Proc. Natl Acad. Sci. USA, 88, 1374-1378.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 1374-1378
    • Pfeifer, G.P.1    Drouin, R.2    Riggs, A.D.3    Holmquist, G.P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.