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Volumn 41, Issue 1, 2014, Pages 7-19

CRISPR/Cas9 and Genome Editing in Drosophila

Author keywords

Cas9; CRISPR; Drosophila melanogaster; Genome engineering; Targeted mutagenesis

Indexed keywords

CAS9 ENDONUCLEASE; DNA BINDING PROTEIN; DNA LIGASE 4; DOUBLE STRANDED DNA; ENDONUCLEASE; GUIDE RNA; MESSENGER RNA; MESYLIC ACID ETHYL ESTER; MICRORNA; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; SINGLE STRANDED DNA; UNCLASSIFIED DRUG; UNTRANSLATED RNA;

EID: 84893709652     PISSN: 16738527     EISSN: 18735533     Source Type: Journal    
DOI: 10.1016/j.jgg.2013.12.004     Document Type: Review
Times cited : (153)

References (88)
  • 2
    • 84887902944 scopus 로고    scopus 로고
    • Accelerated homologous recombination and subsequent genome modification in Drosophila
    • Baena-Lopez L.A., Alexandre C., Mitchell A., Pasakarnis L., Vincent J.P. Accelerated homologous recombination and subsequent genome modification in Drosophila. Development 2013, 140:4818-4825.
    • (2013) Development , vol.140 , pp. 4818-4825
    • Baena-Lopez, L.A.1    Alexandre, C.2    Mitchell, A.3    Pasakarnis, L.4    Vincent, J.P.5
  • 3
    • 84892437994 scopus 로고    scopus 로고
    • Highly efficient targeted mutagenesis of Drosophila with the CRISPR/Cas9 system
    • Bassett A.R., Tibbit C., Ponting C.P., Liu J.L. Highly efficient targeted mutagenesis of Drosophila with the CRISPR/Cas9 system. Cell Rep. 2013, 4:220-228.
    • (2013) Cell Rep. , vol.4 , pp. 220-228
    • Bassett, A.R.1    Tibbit, C.2    Ponting, C.P.3    Liu, J.L.4
  • 4
    • 84893695645 scopus 로고    scopus 로고
    • Mutagenesis and homologous recombination in Drosophila cell lines using CRISPR/Cas9
    • Bassett A.R., Tibbit C., Ponting C.P., Liu J.L. Mutagenesis and homologous recombination in Drosophila cell lines using CRISPR/Cas9. Biol. Open 2014, 3:42-49.
    • (2014) Biol. Open , vol.3 , pp. 42-49
    • Bassett, A.R.1    Tibbit, C.2    Ponting, C.P.3    Liu, J.L.4
  • 10
    • 84881060423 scopus 로고    scopus 로고
    • Donor DNA utilization during gene targeting with zinc-finger nucleases
    • Beumer K.J., Trautman J.K., Mukherjee K., Carroll D. Donor DNA utilization during gene targeting with zinc-finger nucleases. G3 (Bethesda) 2013, 3:657-664.
    • (2013) G3 (Bethesda) , vol.3 , pp. 657-664
    • Beumer, K.J.1    Trautman, J.K.2    Mukherjee, K.3    Carroll, D.4
  • 11
    • 0037510038 scopus 로고    scopus 로고
    • Enhancing gene targeting with designed zinc finger nucleases
    • Bibikova M., Beumer K., Trautman J.K., Carroll D. Enhancing gene targeting with designed zinc finger nucleases. Science 2003, 300:764.
    • (2003) Science , vol.300 , pp. 764
    • Bibikova, M.1    Beumer, K.2    Trautman, J.K.3    Carroll, D.4
  • 12
    • 0036021389 scopus 로고    scopus 로고
    • Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases
    • Bibikova M., Golic M., Golic K.G., Carroll D. Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases. Genetics 2002, 161:1169-1175.
    • (2002) Genetics , vol.161 , pp. 1169-1175
    • Bibikova, M.1    Golic, M.2    Golic, K.G.3    Carroll, D.4
  • 13
    • 84879014174 scopus 로고    scopus 로고
    • CRISPRTarget: bioinformatic prediction and analysis of crRNA targets
    • Biswas A., Gagnon J.N., Brouns S.J., Fineran P.C., Brown C.M. CRISPRTarget: bioinformatic prediction and analysis of crRNA targets. RNA Biol. 2013, 10:817-827.
    • (2013) RNA Biol. , vol.10 , pp. 817-827
    • Biswas, A.1    Gagnon, J.N.2    Brouns, S.J.3    Fineran, P.C.4    Brown, C.M.5
  • 15
    • 0024690540 scopus 로고
    • Genetic and structural characterization of the avirulence gene avrBs3 from Xanthomonas campestris pv. vesicatoria
    • Bonas U., Stall R.E., Staskawicz B. Genetic and structural characterization of the avirulence gene avrBs3 from Xanthomonas campestris pv. vesicatoria. Mol. Gen. Genet. 1989, 218:127-136.
    • (1989) Mol. Gen. Genet. , vol.218 , pp. 127-136
    • Bonas, U.1    Stall, R.E.2    Staskawicz, B.3
  • 16
    • 84875418596 scopus 로고    scopus 로고
    • Noncoding RNA and polycomb recruitment
    • Brockdorff N. Noncoding RNA and polycomb recruitment. RNA 2013, 19:429-442.
    • (2013) RNA , vol.19 , pp. 429-442
    • Brockdorff, N.1
  • 18
    • 0036493201 scopus 로고    scopus 로고
    • Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors
    • Bulyk M.L., Johnson P.L., Church G.M. Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors. Nucleic Acids Res. 2002, 30:1255-1261.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1255-1261
    • Bulyk, M.L.1    Johnson, P.L.2    Church, G.M.3
  • 21
    • 0028046895 scopus 로고
    • Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions
    • Choo Y., Klug A. Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions. Proc. Natl. Acad. Sci. USA 1994, 91:11168-11172.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 11168-11172
    • Choo, Y.1    Klug, A.2
  • 22
    • 0027994717 scopus 로고
    • Toward a code for the interactions of zinc fingers with DNA: selection of randomized fingers displayed on phage
    • Choo Y., Klug A. Toward a code for the interactions of zinc fingers with DNA: selection of randomized fingers displayed on phage. Proc. Natl. Acad. Sci. USA 1994, 91:11163-11167.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 11163-11167
    • Choo, Y.1    Klug, A.2
  • 23
    • 0028919608 scopus 로고
    • Induction of homologous recombination in mammalian chromosomes by using the I-SceI system of Saccharomyces cerevisiae
    • Choulika A., Perrin A., Dujon B., Nicolas J.F. Induction of homologous recombination in mammalian chromosomes by using the I-SceI system of Saccharomyces cerevisiae. Mol. Cell. Biol. 1995, 15:1968-1973.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 1968-1973
    • Choulika, A.1    Perrin, A.2    Dujon, B.3    Nicolas, J.F.4
  • 27
    • 0027429623 scopus 로고
    • The function of individual zinc fingers in sequence-specific DNA recognition by transcription factor IIIA
    • Del Rio S., Menezes S.R., Setzer D.R. The function of individual zinc fingers in sequence-specific DNA recognition by transcription factor IIIA. J. Mol. Biol. 1993, 233:567-579.
    • (1993) J. Mol. Biol. , vol.233 , pp. 567-579
    • Del Rio, S.1    Menezes, S.R.2    Setzer, D.R.3
  • 29
    • 84884904381 scopus 로고    scopus 로고
    • Engineering the Caenorhabditis elegans genome using Cas9-triggered homologous recombination
    • Dickinson D.J., Ward J.D., Reiner D.J., Goldstein B. Engineering the Caenorhabditis elegans genome using Cas9-triggered homologous recombination. Nat. Methods 2013, 10:1028-1034.
    • (2013) Nat. Methods , vol.10 , pp. 1028-1034
    • Dickinson, D.J.1    Ward, J.D.2    Reiner, D.J.3    Goldstein, B.4
  • 31
    • 84886488970 scopus 로고    scopus 로고
    • Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas
    • Farzadfard F., Perli S.D., Lu T.K. Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas. ACS Synth. Biol. 2013, 2:604-613.
    • (2013) ACS Synth. Biol. , vol.2 , pp. 604-613
    • Farzadfard, F.1    Perli, S.D.2    Lu, T.K.3
  • 36
    • 84866859751 scopus 로고    scopus 로고
    • Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria
    • Gasiunas G., Barrangou R., Horvath P., Siksnys V. Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria. Proc. Natl. Acad. Sci. USA 2012, 109:E2579-E2586.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109
    • Gasiunas, G.1    Barrangou, R.2    Horvath, P.3    Siksnys, V.4
  • 39
    • 0024378286 scopus 로고
    • The FLP recombinase of yeast catalyzes site-specific recombination in the Drosophila genome
    • Golic K.G., Lindquist S. The FLP recombinase of yeast catalyzes site-specific recombination in the Drosophila genome. Cell 1989, 59:499-509.
    • (1989) Cell , vol.59 , pp. 499-509
    • Golic, K.G.1    Lindquist, S.2
  • 41
    • 34250662138 scopus 로고    scopus 로고
    • The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
    • Grissa I., Vergnaud G., Pourcel C. The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics 2007, 8:172.
    • (2007) BMC Bioinformatics , vol.8 , pp. 172
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 42
    • 34547579396 scopus 로고    scopus 로고
    • CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
    • Grissa I., Vergnaud G., Pourcel C. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res. 2007, 35:W52-W57.
    • (2007) Nucleic Acids Res. , vol.35
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 43
    • 48449088977 scopus 로고    scopus 로고
    • CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats
    • Grissa I., Vergnaud G., Pourcel C. CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats. Nucleic Acids Res. 2008, 36:W145-W148.
    • (2008) Nucleic Acids Res. , vol.36
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 44
    • 2442458847 scopus 로고    scopus 로고
    • Construction of transgenic Drosophila by using the site-specific integrase from phage phiC31
    • Groth A.C., Fish M., Nusse R., Calos M.P. Construction of transgenic Drosophila by using the site-specific integrase from phage phiC31. Genetics 2004, 166:1775-1782.
    • (2004) Genetics , vol.166 , pp. 1775-1782
    • Groth, A.C.1    Fish, M.2    Nusse, R.3    Calos, M.P.4
  • 47
    • 56049092040 scopus 로고    scopus 로고
    • Efficient ends-out gene targeting in Drosophila
    • Huang J., Zhou W., Watson A.M., Jan Y.N., Hong Y. Efficient ends-out gene targeting in Drosophila. Genetics 2008, 180:703-707.
    • (2008) Genetics , vol.180 , pp. 703-707
    • Huang, J.1    Zhou, W.2    Watson, A.M.3    Jan, Y.N.4    Hong, Y.5
  • 49
    • 0023600057 scopus 로고
    • Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product
    • Ishino Y., Shinagawa H., Makino K., Amemura M., Nakata A. Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product. J. Bacteriol. 1987, 169:5429-5433.
    • (1987) J. Bacteriol. , vol.169 , pp. 5429-5433
    • Ishino, Y.1    Shinagawa, H.2    Makino, K.3    Amemura, M.4    Nakata, A.5
  • 50
    • 0036267740 scopus 로고    scopus 로고
    • Identification of genes that are associated with DNA repeats in prokaryotes
    • Jansen R., Embden J.D., Gaastra W., Schouls L.M. Identification of genes that are associated with DNA repeats in prokaryotes. Mol. Microbiol. 2002, 43:1565-1575.
    • (2002) Mol. Microbiol. , vol.43 , pp. 1565-1575
    • Jansen, R.1    Embden, J.D.2    Gaastra, W.3    Schouls, L.M.4
  • 51
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek M., Chylinski K., Fonfara I., Hauer M., Doudna J.A., Charpentier E. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 2012, 337:816-821.
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5    Charpentier, E.6
  • 54
    • 84884925278 scopus 로고    scopus 로고
    • Highly improved gene targeting by germline-specific Cas9 expression in Drosophila
    • Kondo S., Ueda R. Highly improved gene targeting by germline-specific Cas9 expression in Drosophila. Genetics 2013, 195:715-721.
    • (2013) Genetics , vol.195 , pp. 715-721
    • Kondo, S.1    Ueda, R.2
  • 55
    • 84884965371 scopus 로고    scopus 로고
    • CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems
    • Lange S.J., Alkhnbashi O.S., Rose D., Will S., Backofen R. CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems. Nucleic Acids Res. 2013, 41:8034-8044.
    • (2013) Nucleic Acids Res. , vol.41 , pp. 8034-8044
    • Lange, S.J.1    Alkhnbashi, O.S.2    Rose, D.3    Will, S.4    Backofen, R.5
  • 57
    • 79960034141 scopus 로고    scopus 로고
    • Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes
    • Li T., Huang S., Zhao X., Wright D.A., Carpenter S., Spalding M.H., Weeks D.P., Yang B. Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes. Nucleic Acids Res. 2011, 39:6315-6325.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 6315-6325
    • Li, T.1    Huang, S.2    Zhao, X.3    Wright, D.A.4    Carpenter, S.5    Spalding, M.H.6    Weeks, D.P.7    Yang, B.8
  • 60
    • 84884160273 scopus 로고    scopus 로고
    • CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering
    • Mali P., Aach J., Stranges P.B., Esvelt K.M., Moosburner M., Kosuri S., Yang L., Church G.M. CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nat. Biotechnol. 2013, 31:833-838.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 833-838
    • Mali, P.1    Aach, J.2    Stranges, P.B.3    Esvelt, K.M.4    Moosburner, M.5    Kosuri, S.6    Yang, L.7    Church, G.M.8
  • 63
    • 78149408021 scopus 로고    scopus 로고
    • Massive turnover of functional sequence in human and other mammalian genomes
    • Meader S., Ponting C.P., Lunter G. Massive turnover of functional sequence in human and other mammalian genomes. Genome Res. 2010, 20:1335-1343.
    • (2010) Genome Res. , vol.20 , pp. 1335-1343
    • Meader, S.1    Ponting, C.P.2    Lunter, G.3
  • 64
    • 64049118040 scopus 로고    scopus 로고
    • Short motif sequences determine the targets of the prokaryotic CRISPR defence system
    • Mojica F.J., Diez-Villasenor C., Garcia-Martinez J., Almendros C. Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 2009, 155:733-740.
    • (2009) Microbiology , vol.155 , pp. 733-740
    • Mojica, F.J.1    Diez-Villasenor, C.2    Garcia-Martinez, J.3    Almendros, C.4
  • 65
    • 72149090954 scopus 로고    scopus 로고
    • A simple cipher governs DNA recognition by TAL effectors
    • Moscou M.J., Bogdanove A.J. A simple cipher governs DNA recognition by TAL effectors. Science 2009, 326:1501.
    • (2009) Science , vol.326 , pp. 1501
    • Moscou, M.J.1    Bogdanove, A.J.2
  • 66
    • 70349312354 scopus 로고    scopus 로고
    • ChIP-seq: advantages and challenges of a maturing technology
    • Park P.J. ChIP-seq: advantages and challenges of a maturing technology. Nat. Rev. Genet. 2009, 10:669-680.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 669-680
    • Park, P.J.1
  • 68
    • 84874687019 scopus 로고    scopus 로고
    • Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
    • Qi L.S., Larson M.H., Gilbert L.A., Doudna J.A., Weissman J.S., Arkin A.P., Lim W.A. Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell 2013, 152:1173-1183.
    • (2013) Cell , vol.152 , pp. 1173-1183
    • Qi, L.S.1    Larson, M.H.2    Gilbert, L.A.3    Doudna, J.A.4    Weissman, J.S.5    Arkin, A.P.6    Lim, W.A.7
  • 72
    • 0034674713 scopus 로고    scopus 로고
    • Gene targeting by homologous recombination in Drosophila
    • Rong Y.S., Golic K.G. Gene targeting by homologous recombination in Drosophila. Science 2000, 288:2013-2018.
    • (2000) Science , vol.288 , pp. 2013-2018
    • Rong, Y.S.1    Golic, K.G.2
  • 76
    • 34547605763 scopus 로고    scopus 로고
    • Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool
    • Sander J.D., Zaback P., Joung J.K., Voytas D.F., Dobbs D. Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool. Nucleic Acids Res. 2007, 35:W599-W605.
    • (2007) Nucleic Acids Res. , vol.35
    • Sander, J.D.1    Zaback, P.2    Joung, J.K.3    Voytas, D.F.4    Dobbs, D.5
  • 77
  • 78
    • 84888372954 scopus 로고    scopus 로고
    • A simplified and efficient germline-specific CRISPR/Cas9 system for Drosophila genomic engineering
    • Sebo Z.L., Lee H.B., Peng Y., Guo Y. A simplified and efficient germline-specific CRISPR/Cas9 system for Drosophila genomic engineering. Fly (Austin) 2013, 8.
    • (2013) Fly (Austin) , vol.8
    • Sebo, Z.L.1    Lee, H.B.2    Peng, Y.3    Guo, Y.4
  • 81
    • 84878527075 scopus 로고    scopus 로고
    • Crass: identification and reconstruction of CRISPR from unassembled metagenomic data
    • Skennerton C.T., Imelfort M., Tyson G.W. Crass: identification and reconstruction of CRISPR from unassembled metagenomic data. Nucleic Acids Res. 2013, 41:e105.
    • (2013) Nucleic Acids Res. , vol.41
    • Skennerton, C.T.1    Imelfort, M.2    Tyson, G.W.3
  • 82
    • 0029598505 scopus 로고
    • Double-strand breaks at the target locus stimulate gene targeting in embryonic stem cells
    • Smih F., Rouet P., Romanienko P.J., Jasin M. Double-strand breaks at the target locus stimulate gene targeting in embryonic stem cells. Nucleic Acids Res. 1995, 23:5012-5019.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 5012-5019
    • Smih, F.1    Rouet, P.2    Romanienko, P.J.3    Jasin, M.4
  • 83
    • 84877707375 scopus 로고    scopus 로고
    • One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering
    • Wang H., Yang H., Shivalila C.S., Dawlaty M.M., Cheng A.W., Zhang F., Jaenisch R. One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering. Cell 2013, 153:910-918.
    • (2013) Cell , vol.153 , pp. 910-918
    • Wang, H.1    Yang, H.2    Shivalila, C.S.3    Dawlaty, M.M.4    Cheng, A.W.5    Zhang, F.6    Jaenisch, R.7
  • 84
    • 84892749369 scopus 로고    scopus 로고
    • Genetic screens in human cells using the CRISPR-Cas9 system
    • Wang T., Wei J.J., Sabatini D.M., Lander E.S. Genetic screens in human cells using the CRISPR-Cas9 system. Science 2014, 343:80-84.
    • (2014) Science , vol.343 , pp. 80-84
    • Wang, T.1    Wei, J.J.2    Sabatini, D.M.3    Lander, E.S.4
  • 85
    • 84879410743 scopus 로고    scopus 로고
    • TALEN or Cas9 - rapid, efficient and specific choices for genome modifications
    • Wei C., Liu J., Yu Z., Zhang B., Gao G., Jiao R. TALEN or Cas9 - rapid, efficient and specific choices for genome modifications. J. Genet. Genomics 2013, 40:281-289.
    • (2013) J. Genet. Genomics , vol.40 , pp. 281-289
    • Wei, C.1    Liu, J.2    Yu, Z.3    Zhang, B.4    Gao, G.5    Jiao, R.6
  • 87
    • 84883809403 scopus 로고    scopus 로고
    • Highly efficient genome modifications mediated by CRISPR/Cas9 in Drosophila
    • Yu Z., Ren M., Wang Z., Zhang B., Rong Y.S., Jiao R., Gao G. Highly efficient genome modifications mediated by CRISPR/Cas9 in Drosophila. Genetics 2013, 195:289-291.
    • (2013) Genetics , vol.195 , pp. 289-291
    • Yu, Z.1    Ren, M.2    Wang, Z.3    Zhang, B.4    Rong, Y.S.5    Jiao, R.6    Gao, G.7


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