메뉴 건너뛰기




Volumn 20, Issue 11, 2013, Pages 1250-1257

Promiscuous RNA binding by Polycomb repressive complex 2

Author keywords

[No Author keywords available]

Indexed keywords

POLYCOMB REPRESSIVE COMPLEX 2;

EID: 84887419464     PISSN: 15459993     EISSN: 15459985     Source Type: Journal    
DOI: 10.1038/nsmb.2679     Document Type: Article
Times cited : (367)

References (57)
  • 1
    • 78751662908 scopus 로고    scopus 로고
    • The Polycomb complex PRC2 and its mark in life
    • Margueron, R. & Reinberg, D. The Polycomb complex PRC2 and its mark in life. Nature 469, 343-349 (2011).
    • (2011) Nature , vol.469 , pp. 343-349
    • Margueron, R.1    Reinberg, D.2
  • 2
    • 3042801308 scopus 로고    scopus 로고
    • SUZ12 is required for both the histone methyltransferase activity and the silencing function of the EED-EZH2 complex
    • Cao, R. & Zhang, Y. SUZ12 is required for both the histone methyltransferase activity and the silencing function of the EED-EZH2 complex. Mol. Cell 15, 57-67 (2004).
    • (2004) Mol. Cell , vol.15 , pp. 57-67
    • Cao, R.1    Zhang, Y.2
  • 3
    • 70349952171 scopus 로고    scopus 로고
    • Role of the polycomb protein EED in the propagation of repressive histone marks
    • Margueron, R. et al. Role of the polycomb protein EED in the propagation of repressive histone marks. Nature 461, 762-767 (2009).
    • (2009) Nature , vol.461 , pp. 762-767
    • Margueron, R.1
  • 4
    • 78650613168 scopus 로고    scopus 로고
    • Binding of different histone marks differentially regulates the activity and specificity of polycomb repressive complex 2 (PRC2)
    • Xu, C. et al. Binding of different histone marks differentially regulates the activity and specificity of polycomb repressive complex 2 (PRC2). Proc. Natl. Acad. Sci. USA 107, 19266-19271 (2010).
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 19266-19271
    • Xu, C.1
  • 5
    • 84865292901 scopus 로고    scopus 로고
    • Dense chromatin activates Polycomb repressive complex 2 to regulate H3 lysine 27 methylation
    • Yuan, W. et al. Dense chromatin activates Polycomb repressive complex 2 to regulate H3 lysine 27 methylation. Science 337, 971-975 (2012).
    • (2012) Science , vol.337 , pp. 971-975
    • Yuan, W.1
  • 6
    • 79955494277 scopus 로고    scopus 로고
    • Histone methylation by PRC2 is inhibited by active chromatin marks
    • Schmitges, F.W. et al. Histone methylation by PRC2 is inhibited by active chromatin marks. Mol. Cell 42, 330-341 (2011).
    • (2011) Mol. Cell , vol.42 , pp. 330-341
    • Schmitges, F.W.1
  • 7
    • 79953143753 scopus 로고    scopus 로고
    • H3K36 methylation antagonizes PRC2-mediated H3K27 methylation
    • Yuan, W. et al. H3K36 methylation antagonizes PRC2-mediated H3K27 methylation. J. Biol. Chem. 286, 7983-7989 (2011).
    • (2011) J. Biol. Chem. , vol.286 , pp. 7983-7989
    • Yuan, W.1
  • 8
    • 33646882068 scopus 로고    scopus 로고
    • Polycomb complexes repress developmental regulators in murine embryonic stem cells
    • Boyer, L.A. et al. Polycomb complexes repress developmental regulators in murine embryonic stem cells. Nature 441, 349-353 (2006).
    • (2006) Nature , vol.441 , pp. 349-353
    • Boyer, L.A.1
  • 9
    • 33646865180 scopus 로고    scopus 로고
    • Control of developmental regulators by Polycomb in human embryonic stem cells
    • Lee, T.I. et al. Control of developmental regulators by Polycomb in human embryonic stem cells. Cell 125, 301-313 (2006).
    • (2006) Cell , vol.125 , pp. 301-313
    • Lee, T.I.1
  • 10
    • 84455200582 scopus 로고    scopus 로고
    • Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells
    • Ram, O. et al. Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells. Cell 147, 1628-1639 (2011).
    • (2011) Cell , vol.147 , pp. 1628-1639
    • Ram, O.1
  • 11
    • 33646070846 scopus 로고    scopus 로고
    • A bivalent chromatin structure marks key developmental genes in embryonic stem cells
    • Bernstein, B.E. et al. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125, 315-326 (2006).
    • (2006) Cell , vol.125 , pp. 315-326
    • Bernstein, B.E.1
  • 12
    • 33646872978 scopus 로고    scopus 로고
    • Chromatin signatures of pluripotent cell lines
    • Azuara, V. et al. Chromatin signatures of pluripotent cell lines. Nat. Cell Biol. 8, 532-538 (2006).
    • (2006) Nat. Cell Biol. , vol.8 , pp. 532-538
    • Azuara, V.1
  • 13
    • 33750488431 scopus 로고    scopus 로고
    • The genomic landscape of histone modifications in human T cells
    • Roh, T.Y., Cuddapah, S., Cui, K. & Zhao, K. The genomic landscape of histone modifications in human T cells. Proc. Natl. Acad. Sci. USA 103, 15782-15787 (2006).
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 15782-15787
    • Roh, T.Y.1    Cuddapah, S.2    Cui, K.3    Zhao, K.4
  • 14
    • 84856237597 scopus 로고    scopus 로고
    • Polycomb protein Ezh1 promotes RNA polymerase II elongation
    • Mousavi, K., Zare, H., Wang, A.H. & Sartorelli, V. Polycomb protein Ezh1 promotes RNA polymerase II elongation. Mol. Cell 45, 255-262 (2012).
    • (2012) Mol. Cell , vol.45 , pp. 255-262
    • Mousavi, K.1    Zare, H.2    Wang, A.H.3    Sartorelli, V.4
  • 15
    • 84861365971 scopus 로고    scopus 로고
    • Polycomb repressive complex 2-dependent and-independent functions of Jarid2 in transcriptional regulation in Drosophila
    • Herz, H.M. et al. Polycomb repressive complex 2-dependent and-independent functions of Jarid2 in transcriptional regulation in Drosophila. Mol. Cell. Biol. 32, 1683-1693 (2012).
    • (2012) Mol. Cell. Biol. , vol.32 , pp. 1683-1693
    • Herz, H.M.1
  • 16
    • 84856756676 scopus 로고    scopus 로고
    • Polycomb associates genome-wide with a specific RNA polymerase II variant, and regulates metabolic genes in ESCs
    • Brookes, E. et al. Polycomb associates genome-wide with a specific RNA polymerase II variant, and regulates metabolic genes in ESCs. Cell Stem Cell 10, 157-170 (2012).
    • (2012) Cell Stem Cell , vol.10 , pp. 157-170
    • Brookes, E.1
  • 17
    • 84870833161 scopus 로고    scopus 로고
    • Phf19 links methylated Lys36 of histone H3 to regulation of Polycomb activity
    • Ballaré, C. et al. Phf19 links methylated Lys36 of histone H3 to regulation of Polycomb activity. Nat. Struct. Mol. Biol. 19, 1257-1265 (2012).
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , pp. 1257-1265
    • Ballaré, C.1
  • 18
    • 84870855250 scopus 로고    scopus 로고
    • Molecular basis for H3K36me3 recognition by the Tudor domain of PHF1
    • Musselman, C.A. et al. Molecular basis for H3K36me3 recognition by the Tudor domain of PHF1. Nat. Struct. Mol. Biol. 19, 1266-1272 (2012).
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , pp. 1266-1272
    • Musselman, C.A.1
  • 19
    • 84870825642 scopus 로고    scopus 로고
    • Polycomb PHF19 binds H3K36me3 and recruits PRC2 and demethylase NO66 to embryonic stem cell genes during differentiation
    • Brien, G.L. et al. Polycomb PHF19 binds H3K36me3 and recruits PRC2 and demethylase NO66 to embryonic stem cell genes during differentiation. Nat. Struct. Mol. Biol. 19, 1273-1281 (2012).
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , pp. 1273-1281
    • Brien, G.L.1
  • 20
    • 33845799903 scopus 로고    scopus 로고
    • Polycomb silencing mechanisms and the management of genomic programmes
    • Schwartz, Y.B. & Pirrotta, V. Polycomb silencing mechanisms and the management of genomic programmes. Nat. Rev. Genet. 8, 9-22 (2007).
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 9-22
    • Schwartz, Y.B.1    Pirrotta, V.2
  • 21
    • 84860528446 scopus 로고    scopus 로고
    • A novel human polycomb binding site acts as a functional polycomb response element in Drosophila
    • Cuddapah, S. et al. A novel human polycomb binding site acts as a functional polycomb response element in Drosophila. PLoS ONE 7, e36365 (2012).
    • (2012) PLoS ONE , vol.7
    • Cuddapah, S.1
  • 22
    • 69449086947 scopus 로고    scopus 로고
    • A vertebrate Polycomb response element governs segmentation of the posterior hindbrain
    • Sing, A. et al. A vertebrate Polycomb response element governs segmentation of the posterior hindbrain. Cell 138, 885-897 (2009).
    • (2009) Cell , vol.138 , pp. 885-897
    • Sing, A.1
  • 23
    • 73149111929 scopus 로고    scopus 로고
    • A region of the human HOXD cluster that confers polycomb-group responsiveness
    • Woo, C.J., Kharchenko, P.V., Daheron, L., Park, P.J. & Kingston, R.E. A region of the human HOXD cluster that confers polycomb-group responsiveness. Cell 140, 99-110 (2010).
    • (2010) Cell , vol.140 , pp. 99-110
    • Woo, C.J.1    Kharchenko, P.V.2    Daheron, L.3    Park, P.J.4    Kingston, R.E.5
  • 24
    • 77954572735 scopus 로고    scopus 로고
    • Long noncoding RNA as modular scaffold of histone modification complexes
    • Tsai, M.C. et al. Long noncoding RNA as modular scaffold of histone modification complexes. Science 329, 689-693 (2010).
    • (2010) Science , vol.329 , pp. 689-693
    • Tsai, M.C.1
  • 25
    • 34250729138 scopus 로고    scopus 로고
    • Functional demarcation of active and silent chromatin domains in human s loci by noncoding RNAs
    • Rinn, J.L. et al. Functional demarcation of active and silent chromatin domains in human s loci by noncoding RNAs. Cell 129, 1311-1323 (2007).
    • (2007) Cell , vol.129 , pp. 1311-1323
    • Rinn, J.L.1
  • 26
    • 80054756754 scopus 로고    scopus 로고
    • Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions
    • Chu, C., Qu, K., Zhong, F.L., Artandi, S.E. & Chang, H.Y. Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions. Mol. Cell 44, 667-678 (2011).
    • (2011) Mol. Cell , vol.44 , pp. 667-678
    • Chu, C.1    Qu, K.2    Zhong, F.L.3    Artandi, S.E.4    Chang, H.Y.5
  • 27
    • 55349109963 scopus 로고    scopus 로고
    • Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
    • Zhao, J., Sun, B.K., Erwin, J.A., Song, J.J. & Lee, J.T. Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science 322, 750-756 (2008).
    • (2008) Science , vol.322 , pp. 750-756
    • Zhao, J.1    Sun, B.K.2    Erwin, J.A.3    Song, J.J.4    Lee, J.T.5
  • 28
    • 77953107585 scopus 로고    scopus 로고
    • Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2
    • Kanhere, A. et al. Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2. Mol. Cell 38, 675-688 (2010).
    • (2010) Mol. Cell , vol.38 , pp. 675-688
    • Kanhere, A.1
  • 29
    • 78650253763 scopus 로고    scopus 로고
    • Genome-wide identification of polycomb-associated RNAs by RIP-seq
    • Zhao, J. et al. Genome-wide identification of polycomb-associated RNAs by RIP-seq. Mol. Cell 40, 939-953 (2010).
    • (2010) Mol. Cell , vol.40 , pp. 939-953
    • Zhao, J.1
  • 30
    • 67650921949 scopus 로고    scopus 로고
    • Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
    • Khalil, A.M. et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc. Natl. Acad. Sci. USA 106, 11667-11672 (2009).
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 11667-11672
    • Khalil, A.M.1
  • 31
    • 80052869283 scopus 로고    scopus 로고
    • LincRNAs act in the circuitry controlling pluripotency and differentiation
    • Guttman, M. et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 477, 295-300 (2011).
    • (2011) Nature , vol.477 , pp. 295-300
    • Guttman, M.1
  • 32
    • 75749124997 scopus 로고    scopus 로고
    • 2-D structure of the A region of Xist RNA and its implication for PRC2 association
    • Maenner, S. et al. 2-D structure of the A region of Xist RNA and its implication for PRC2 association. PLoS Biol. 8, e1000276 (2010).
    • (2010) PLoS Biol. , vol.8
    • Maenner, S.1
  • 33
    • 80054719512 scopus 로고    scopus 로고
    • The Xist RNA A-repeat comprises a novel AUCG tetraloop fold and a platform for multimerization
    • Duszczyk, M.M., Wutz, A., Rybin, V. & Sattler, M. The Xist RNA A-repeat comprises a novel AUCG tetraloop fold and a platform for multimerization. RNA 17, 1973-1982 (2011).
    • (2011) RNA , vol.17 , pp. 1973-1982
    • Duszczyk, M.M.1    Wutz, A.2    Rybin, V.3    Sattler, M.4
  • 34
    • 78649807567 scopus 로고    scopus 로고
    • Phosphorylation of the PRC2 component Ezh2 is cell cycle-regulated and up-regulates its binding to ncRNA
    • Kaneko, S. et al. Phosphorylation of the PRC2 component Ezh2 is cell cycle-regulated and up-regulates its binding to ncRNA. Genes Dev. 24, 2615-2620 (2010).
    • (2010) Genes Dev. , vol.24 , pp. 2615-2620
    • Kaneko, S.1
  • 35
    • 0022549616 scopus 로고
    • Cooperative and noncooperative binding of protein ligands to nucleic acid lattices: Experimental approaches to the determination of thermodynamic parameters
    • Kowalczykowski, S.C. et al. Cooperative and noncooperative binding of protein ligands to nucleic acid lattices: experimental approaches to the determination of thermodynamic parameters. Biochemistry 25, 1226-1240 (1986).
    • (1986) Biochemistry , vol.25 , pp. 1226-1240
    • Kowalczykowski, S.C.1
  • 36
    • 0018505707 scopus 로고
    • Kinetics of nucleic acid-large ligand interactions: Exact Monte Carlo treatment and limiting cases of reversible binding
    • Epstein, I.R. Kinetics of nucleic acid-large ligand interactions: exact Monte Carlo treatment and limiting cases of reversible binding. Biopolymers 18, 2037-2050 (1979).
    • (1979) Biopolymers , vol.18 , pp. 2037-2050
    • Epstein, I.R.1
  • 37
    • 80053197539 scopus 로고    scopus 로고
    • Argonaute protein identity and pairing geometry determine cooperativity in mammalian RNA silencing
    • Broderick, J.A., Salomon, W.E., Ryder, S.P., Aronin, N. & Zamore, P.D. Argonaute protein identity and pairing geometry determine cooperativity in mammalian RNA silencing. RNA 17, 1858-1869 (2011).
    • (2011) RNA , vol.17 , pp. 1858-1869
    • Broderick, J.A.1    Salomon, W.E.2    Ryder, S.P.3    Aronin, N.4    Zamore, P.D.5
  • 38
    • 0017146579 scopus 로고
    • Ion effects on ligand-nucleic acid interactions
    • Record, M.T. Jr., Lohman, M.L. & De Haseth, P. Ion effects on ligand-nucleic acid interactions. J. Mol. Biol. 107, 145-158 (1976).
    • (1976) J. Mol. Biol. , vol.107 , pp. 145-158
    • Record Jr., M.T.1    Lohman, M.L.2    De Haseth, P.3
  • 39
    • 84874742223 scopus 로고    scopus 로고
    • Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex
    • Makino, D.L., Baumgartner, M. & Conti, E. Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex. Nature 495, 70-75 (2013).
    • (2013) Nature , vol.495 , pp. 70-75
    • Makino, D.L.1    Baumgartner, M.2    Conti, E.3
  • 41
    • 84860351082 scopus 로고    scopus 로고
    • The transcriptional and epigenomic foundations of ground state pluripotency
    • Marks, H. et al. The transcriptional and epigenomic foundations of ground state pluripotency. Cell 149, 590-604 (2012).
    • (2012) Cell , vol.149 , pp. 590-604
    • Marks, H.1
  • 42
    • 0036618178 scopus 로고    scopus 로고
    • Preferential transformation of human neuronal cells by human adenoviruses and the origin of HEK 293 cells
    • Shaw, G., Morse, S., Ararat, M. & Graham, F.L. Preferential transformation of human neuronal cells by human adenoviruses and the origin of HEK 293 cells. FASEB J. 16, 869-871 (2002).
    • (2002) FASEB J. , vol.16 , pp. 869-871
    • Shaw, G.1    Morse, S.2    Ararat, M.3    Graham, F.L.4
  • 43
    • 84871590658 scopus 로고    scopus 로고
    • FUS binds the CTD of RNA polymerase II and regulates its phosphorylation at Ser2
    • Schwartz, J.C. et al. FUS binds the CTD of RNA polymerase II and regulates its phosphorylation at Ser2. Genes Dev. 26, 2690-2695 (2012).
    • (2012) Genes Dev. , vol.26 , pp. 2690-2695
    • Schwartz, J.C.1
  • 44
    • 55449105221 scopus 로고    scopus 로고
    • Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains
    • Ku, M. et al. Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains. PLoS Genet. 4, e1000242 (2008).
    • (2008) PLoS Genet. , vol.4
    • Ku, M.1
  • 45
    • 55549103314 scopus 로고    scopus 로고
    • A model for transmission of the H3K27me3 epigenetic mark
    • Hansen, K.H. et al. A model for transmission of the H3K27me3 epigenetic mark. Nat. Cell Biol. 10, 1291-1300 (2008).
    • (2008) Nat. Cell Biol. , vol.10 , pp. 1291-1300
    • Hansen, K.H.1
  • 46
    • 84879376976 scopus 로고    scopus 로고
    • Jpx RNA Activates Xist by evicting CTCF
    • Sun, S. et al. Jpx RNA Activates Xist by evicting CTCF. Cell 153, 1537-1551 (2013).
    • (2013) Cell , vol.153 , pp. 1537-1551
    • Sun, S.1
  • 48
    • 77953623874 scopus 로고    scopus 로고
    • Enzyme promiscuity: A mechanistic and evolutionary perspective
    • Khersonsky, O. & Tawfik, D.S. Enzyme promiscuity: a mechanistic and evolutionary perspective. Annu. Rev. Biochem. 79, 471-505 (2010).
    • (2010) Annu. Rev. Biochem. , vol.79 , pp. 471-505
    • Khersonsky, O.1    Tawfik, D.S.2
  • 49
    • 0027985820 scopus 로고
    • Coaxially stacked RNA helices in the catalytic center of the Tetrahymena ribozyme
    • Murphy, F.L., Wang, Y.H., Griffith, J.D. & Cech, T.R. Coaxially stacked RNA helices in the catalytic center of the Tetrahymena ribozyme. Science 265, 1709-1712 (1994).
    • (1994) Science , vol.265 , pp. 1709-1712
    • Murphy, F.L.1    Wang, Y.H.2    Griffith, J.D.3    Cech, T.R.4
  • 50
    • 62349130698 scopus 로고    scopus 로고
    • And memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. & Salzberg, S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
    • (2009) Genome Biol. , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Ultrafast, L.S.S.4
  • 51
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A.R. & Hall, I.M. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 52
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/Map format and SAMtools
    • Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 53
    • 78651271733 scopus 로고    scopus 로고
    • Integrative genomics viewer
    • Robinson, J.T. et al. Integrative genomics viewer. Nat. Biotechnol. 29, 24-26 (2011).
    • (2011) Nat. Biotechnol. , vol.29 , pp. 24-26
    • Robinson, J.T.1
  • 54
    • 53849146020 scopus 로고    scopus 로고
    • Model-based analysis of ChIP-Seq (MACS)
    • Zhang, Y. et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9, R137 (2008).
    • (2008) Genome Biol. , vol.9
    • Zhang, Y.1
  • 55
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B 57, 289-300 (1995).
    • (1995) J. R. Stat. Soc. Ser. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 56
    • 84871590658 scopus 로고    scopus 로고
    • FUS binds the CTD of RNA polymerase II and regulates its phosphorylation at Ser2
    • Schwartz, J.C. et al. FUS binds the CTD of RNA polymerase II and regulates its phosphorylation at Ser2. Genes Dev. 26, 2690-2695 (2012).
    • (2012) Genes Dev. , vol.26 , pp. 2690-2695
    • Schwartz, J.C.1
  • 57
    • 34547571030 scopus 로고    scopus 로고
    • G: Profiler: A web-based toolset for functional profiling of gene lists from large-scale experiments
    • Reimand, J., Kull, M., Peterson, H., Hansen, J. & Vilo, J. g:Profiler: a web-based toolset for functional profiling of gene lists from large-scale experiments. Nucleic Acids Res. 35, W193-W200 (2007).
    • (2007) Nucleic Acids Res. , vol.35
    • Reimand, J.1    Kull, M.2    Peterson, H.3    Hansen, J.4    Vilo, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.