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Volumn 31, Issue 2, 2014, Pages 288-302

Origin and differential selection of allelic variation at TAS2R16 associated with salicin bitter taste sensitivity in Africa

(16)  Campbell, Michael C a   Ranciaro, Alessia a   Zinshteyn, Daniel a   Rawlings Goss, Renata a   Hirbo, Jibril a   Thompson, Simon a   Woldemeskel, Dawit a,b   Froment, Alain c   Rucker, Joseph B d   Omar, Sabah A e   Bodo, Jean Marie f   Nyambo, Thomas g   Belay, Gurja b   Drayna, Dennis h   Breslin, Paul A S i,j   Tishkoff, Sarah A a  


Author keywords

African genetic diversity; genotype phenotype association; salicin taste perception; selection on standing variation

Indexed keywords

SALICIN;

EID: 84893042536     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mst211     Document Type: Article
Times cited : (41)

References (50)
  • 1
    • 0037307413 scopus 로고    scopus 로고
    • Signatures of natural selection in the human genome
    • Bamshad M, Wooding SP. 2003. Signatures of natural selection in the human genome. Nat Rev Genet. 4:99-111.
    • (2003) Nat Rev Genet. , vol.4 , pp. 99-111
    • Bamshad, M.1    Wooding, S.P.2
  • 2
    • 0032900678 scopus 로고    scopus 로고
    • Median-joining networks for inferring intraspecific phylogenies
    • Bandelt HJ, Forster P, Rohl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol. 16:37-48.
    • (1999) Mol Biol Evol. , vol.16 , pp. 37-48
    • Bandelt, H.J.1    Forster, P.2    Rohl, A.3
  • 3
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • Barrett JC, Fry B, Maller J, Daly MJ. 2005. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21: 263-265.
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 4
    • 37549030093 scopus 로고    scopus 로고
    • Adaptation from standing genetic variation
    • Barrett RD, Schluter D. 2008. Adaptation from standing genetic variation. Trends Ecol Evol. 23:38-44.
    • (2008) Trends Ecol Evol. , vol.23 , pp. 38-44
    • Barrett, R.D.1    Schluter, D.2
  • 5
    • 13944250257 scopus 로고    scopus 로고
    • The molecular basis of individual differences in phenylthiocarbamide and propylthiouracil bitterness perception
    • Bufe B, Breslin PAS, Kuhn C, Reed DR, Tharp CD, Slack JP, Kim UK, Drayna D, Meyerhof W. 2005. The molecular basis of individual differences in phenylthiocarbamide and propylthiouracil bitterness perception. Curr Biol. 15:322-327.
    • (2005) Curr Biol. , vol.15 , pp. 322-327
    • Bufe, B.1    Pas, B.2    Kuhn, C.3    Reed, D.R.4    Tharp, C.D.5    Slack, J.P.6    Kim, U.K.7    Drayna, D.8    Meyerhof, W.9
  • 6
    • 0036844351 scopus 로고    scopus 로고
    • The human TAS2R16 receptor mediates bitter taste in response to beta-glucopyranosides
    • Bufe B, Hofmann T, Krautwurst D, Raguse JD, Meyerhof W. 2002. The human TAS2R16 receptor mediates bitter taste in response to beta-glucopyranosides. Nat Genet. 32:397-401.
    • (2002) Nat Genet. , vol.32 , pp. 397-401
    • Bufe, B.1    Hofmann, T.2    Krautwurst, D.3    Raguse, J.D.4    Meyerhof, W.5
  • 8
    • 84858379651 scopus 로고    scopus 로고
    • Evolution of functionally diverse alleles associated with PTC bitter taste sensitivity in Africa
    • (12 co-authors)
    • Campbell MC, Ranciaro A, Froment A, et al. (12 co-authors). 2012. Evolution of functionally diverse alleles associated with PTC bitter taste sensitivity in Africa. Mol Biol Evol. 29:1141-1153.
    • (2012) Mol Biol Evol. , vol.29 , pp. 1141-1153
    • Campbell, M.C.1    Ranciaro, A.2    Froment, A.3
  • 9
    • 76749170199 scopus 로고    scopus 로고
    • The evolution of human genetic and phenotypic variation in Africa
    • Campbell MC, Tishkoff SA. 2010. The evolution of human genetic and phenotypic variation in Africa. Curr Biol. 20:R166-R173.
    • (2010) Curr Biol. , vol.20
    • Campbell, M.C.1    Tishkoff, S.A.2
  • 12
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive Darwinian selection
    • Fay JC, Wu CI. 2000. Hitchhiking under positive Darwinian selection. Genetics 155:1405-1413.
    • (2000) Genetics , vol.155 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.I.2
  • 13
    • 84884315340 scopus 로고    scopus 로고
    • Selection and adaptation in the human genome
    • Fu W, Akey JM. 2013. Selection and adaptation in the human genome. Annu Rev Genomics Hum Genet. 14:467-489.
    • (2013) Annu Rev Genomics Hum Genet. , vol.14 , pp. 467-489
    • Fu, W.1    Akey, J.M.2
  • 14
    • 0042143899 scopus 로고    scopus 로고
    • [updated 2005 Aug 23; cited 2013 Nov 26] Available from
    • Goudet J. 2002. Fstat 2.9.3.2. [updated 2005 Aug 23; cited 2013 Nov 26]. Available from: http://www2.unil.ch/popgen/softwares/fstat.htm.
    • (2002) Fstat 2.9.3.2
    • Goudet, J.1
  • 15
    • 79956347958 scopus 로고    scopus 로고
    • Probenecid inhibits the human bitter taste receptor TAS2R16 and suppresses bitter perception of salicin
    • Greene TA, Alarcon S, Thomas A, Berdougo E, Doranz BJ, Breslin PAS, Rucker JB. 2011. Probenecid inhibits the human bitter taste receptor TAS2R16 and suppresses bitter perception of salicin. PLoS One 6: e20123.
    • (2011) PLoS One , vol.6
    • Greene, T.A.1    Alarcon, S.2    Thomas, A.3    Berdougo, E.4    Doranz, B.J.5    Pas, B.6    Rucker, J.B.7
  • 16
    • 84893074339 scopus 로고    scopus 로고
    • 9.0. [cited 2013 Nov 26]. Available from
    • Griffiths RC. 2007. Genetree v. 9.0. [cited 2013 Nov 26]. Available from: http://www.stats.ox.ac.uk/~griff/software.html.
    • (2007) Genetree V.
    • Griffiths, R.C.1
  • 17
    • 84874069538 scopus 로고    scopus 로고
    • Identifying recent adaptations in large-scale genomic data
    • (19 co-authors)
    • Grossman SR, Andersen KG, Shlyakhter I, et al. (19 co-authors). 2013. Identifying recent adaptations in large-scale genomic data. Cell 152: 703-713.
    • (2013) Cell , vol.152 , pp. 703-713
    • Grossman, S.R.1    Andersen, K.G.2    Shlyakhter, I.3
  • 18
    • 28744452726 scopus 로고
    • The distribution of taste thresholds for phenylthiourea of 384 sib pairs
    • Harris H, Kalmus H. 1951. The distribution of taste thresholds for phenylthiourea of 384 sib pairs. Ann Eugen. 16:226-230.
    • (1951) Ann Eugen. , vol.16 , pp. 226-230
    • Harris, H.1    Kalmus, H.2
  • 19
    • 63449101880 scopus 로고    scopus 로고
    • A world malaria map: Plasmodium falciparum endemicity in 2007
    • (13 co-authors)
    • Hay SI, Guerra CA, Gething PW, et al. (13 co-authors). 2009. A world malaria map: Plasmodium falciparum endemicity in 2007. PLoS Med. 6:e1000048.
    • (2009) PLoS Med. , vol.6
    • Hay, S.I.1    Guerra, C.A.2    Gething, P.W.3
  • 20
    • 79951805645 scopus 로고    scopus 로고
    • Allelic variation in TAS2R bitter receptor genes associates with variation in sensations from and ingestive behaviors toward common bitter beverages in adults
    • Hayes JE, Wallace MR, Knopik VS, Herbstman DM, Bartoshuk LM, Duffy VB. 2011. Allelic variation in TAS2R bitter receptor genes associates with variation in sensations from and ingestive behaviors toward common bitter beverages in adults. Chem Senses. 36: 311-319.
    • (2011) Chem Senses. , vol.36 , pp. 311-319
    • Hayes, J.E.1    Wallace, M.R.2    Knopik, V.S.3    Herbstman, D.M.4    Bartoshuk, L.M.5    Duffy, V.B.6
  • 21
    • 29244451046 scopus 로고    scopus 로고
    • Functional variant in a bitter-taste receptor (hTAS2R16) influences risk of alcohol dependence
    • (24 co-authors)
    • Hinrichs AL, Wang JC, Bufe B, et al. (24 co-authors). 2006. Functional variant in a bitter-taste receptor (hTAS2R16) influences risk of alcohol dependence. Am J Hum Genet. 78:103-111.
    • (2006) Am J Hum Genet. , vol.78 , pp. 103-111
    • Hinrichs, A.L.1    Wang, J.C.2    Bufe, B.3
  • 23
    • 0026709389 scopus 로고
    • Estimation of levels of gene flow from DNA sequence data
    • Hudson RR, Slatkin M, Maddison WP. 1992. Estimation of levels of gene flow from DNA sequence data. Genetics 132:583-589.
    • (1992) Genetics , vol.132 , pp. 583-589
    • Hudson, R.R.1    Slatkin, M.2    Maddison, W.P.3
  • 25
    • 23344438911 scopus 로고    scopus 로고
    • Distinguishing between selective sweeps and demography using DNA polymorphism data
    • Jensen JD, Kim Y, DuMont VB, Aquadro CF, Bustamante CD. 2005. Distinguishing between selective sweeps and demography using DNA polymorphism data. Genetics 170:1401-1410.
    • (2005) Genetics , vol.170 , pp. 1401-1410
    • Jensen, J.D.1    Kim, Y.2    Dumont, V.B.3    Aquadro, C.F.4    Bustamante, C.D.5
  • 26
    • 84876033391 scopus 로고    scopus 로고
    • Systematic underestimation of the age of selected alleles
    • Kelley JL. 2012. Systematic underestimation of the age of selected alleles. Front Genet. 3:165.
    • (2012) Front Genet. , vol.3 , pp. 165
    • Kelley, J.L.1
  • 27
    • 84868610108 scopus 로고    scopus 로고
    • T2R38 taste receptor polymorphisms underlie susceptibility to upper respiratory infection
    • (17 co-authors)
    • Lee RJ, Xiong G, Kofonow JM (17 co-authors). 2012. T2R38 taste receptor polymorphisms underlie susceptibility to upper respiratory infection. J Clin Invest. 22:4145-4159.
    • (2012) J Clin Invest. , vol.22 , pp. 4145-4159
    • Lee, R.J.1    Xiong, G.2    Kofonow, J.M.3
  • 28
    • 80051504325 scopus 로고    scopus 로고
    • Selection on the human bitter taste gene, TAS2R16, in Eurasian populations
    • Li H, Pakstis AJ, Kidd JR, Kidd KK. 2011. Selection on the human bitter taste gene, TAS2R16, in Eurasian populations. Hum Biol. 83: 363-377.
    • (2011) Hum Biol. , vol.83 , pp. 363-377
    • Li, H.1    Pakstis, A.J.2    Kidd, J.R.3    Kidd, K.K.4
  • 29
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 30
    • 51849096312 scopus 로고    scopus 로고
    • Bitter taste receptor gene polymorphisms are an important factor in the development of nicotine dependence in African Americans
    • Mangold JE, Payne TJ, Ma JZ, Chen G, Li MD. 2008. Bitter taste receptor gene polymorphisms are an important factor in the development of nicotine dependence in African Americans. J Med Genet. 45: 578-582.
    • (2008) J Med Genet. , vol.45 , pp. 578-582
    • Mangold, J.E.1    Payne, T.J.2    Ma, J.Z.3    Chen, G.4    Li, M.D.5
  • 31
    • 1642282195 scopus 로고    scopus 로고
    • The allele frequency spectrum in genome-wide human variation data reveals signals of differential demographic history in three large world populations
    • Marth GT, Czabarka E, Murvai J, Sherry ST. 2004. The allele frequency spectrum in genome-wide human variation data reveals signals of differential demographic history in three large world populations. Genetics 166:351-372.
    • (2004) Genetics , vol.166 , pp. 351-372
    • Marth, G.T.1    Czabarka, E.2    Murvai, J.3    Sherry, S.T.4
  • 32
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald JH, KreitmanM. 1991. Adaptive protein evolution at the Adh locus in Drosophila. Nature 351:652-654.
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 34
    • 84868152411 scopus 로고    scopus 로고
    • Distinguishing between selective sweeps from standing variation and from a de novo mutation
    • Peter BM, Huerta-Sanchez E, Nielsen R. 2012. Distinguishing between selective sweeps from standing variation and from a de novo mutation. PLoS Genet. 8:e1003011.
    • (2012) PLoS Genet. , vol.8
    • Peter, B.M.1    Huerta-Sanchez, E.2    Nielsen, R.3
  • 35
    • 28644440530 scopus 로고    scopus 로고
    • The signature of positive selection on standing genetic variation
    • Przeworski M, Coop G, Wall JD. 2005. The signature of positive selection on standing genetic variation. Evolution 59:2312-2323.
    • (2005) Evolution , vol.59 , pp. 2312-2323
    • Przeworski, M.1    Coop, G.2    Wall, J.D.3
  • 36
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: A tool set for whole-genome association and population-based linkage analyses
    • (11 co-authors)
    • Purcell S, Neale B, Todd-Brown K, et al. (11 co-authors). 2007. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet. 81:559-575.
    • (2007) Am J Hum Genet. , vol.81 , pp. 559-575
    • Purcell, S.1    Neale, B.2    Todd-Brown, K.3
  • 37
    • 36549061908 scopus 로고    scopus 로고
    • Taste receptor signaling in the mammalian gut
    • Rozengurt E, Sternini C. 2007. Taste receptor signaling in the mammalian gut. Curr Opin Pharmacol. 7:557-562.
    • (2007) Curr Opin Pharmacol. , vol.7 , pp. 557-562
    • Rozengurt, E.1    Sternini, C.2
  • 38
    • 27844526221 scopus 로고    scopus 로고
    • The case for selection at CCR5-Delta32
    • (15 co-authors)
    • Sabeti PC, Walsh E, Schaffner SF, et al. (15 co-authors). 2005. The case for selection at CCR5-Delta32. PLoS Biol. 3:e378.
    • (2005) PLoS Biol. , vol.3
    • Sabeti, P.C.1    Walsh, E.2    Schaffner, S.F.3
  • 39
    • 77956243395 scopus 로고    scopus 로고
    • Characterization of the beta-D-glucopyranoside binding site of the human bitter taste receptor hTAS2R16
    • (11 co-authors)
    • Sakurai T, Misaka T, Ishiguro M, et al. (11 co-authors). 2010. Characterization of the beta-D-glucopyranoside binding site of the human bitter taste receptor hTAS2R16. J Biol Chem. 285: 28373-28378.
    • (2010) J Biol Chem. , vol.285 , pp. 28373-28378
    • Sakurai, T.1    Misaka, T.2    Ishiguro, M.3
  • 41
    • 33644974019 scopus 로고    scopus 로고
    • A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase
    • Scheet P, Stephens M. 2006. A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am J Hum Genet. 78: 629-644.
    • (2006) Am J Hum Genet. , vol.78 , pp. 629-644
    • Scheet, P.1    Stephens, M.2
  • 42
    • 77952379571 scopus 로고    scopus 로고
    • Colloquium paper: Working toward a synthesis of archaeological, linguistic, and genetic data for inferring African population history
    • Scheinfeldt LB, Soi S, Tishkoff SA. 2010. Colloquium paper: working toward a synthesis of archaeological, linguistic, and genetic data for inferring African population history. Proc Natl Acad Sci USA. 107(Suppl 2), 8931-8938.
    • (2010) Proc Natl Acad Sci USA. , vol.107 , Issue.SUPPL. 2 , pp. 8931-8938
    • Scheinfeldt, L.B.1    Soi, S.2    Tishkoff, S.A.3
  • 45
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens M, Smith NJ, Donnelly P. 2001. A new statistical method for haplotype reconstruction from population data. Am J Hum Genet. 68:978-989.
    • (2001) Am J Hum Genet. , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 46
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 47
    • 66249116333 scopus 로고    scopus 로고
    • The genetic structure and history of Africans and African Americans
    • (25 co-authors).
    • Tishkoff SA, Reed FA, Friedlaender FR, et al. (25 co-authors). 2009. The genetic structure and history of Africans and African Americans. Science 324:1035-1044.
    • (2009) Science , vol.324 , pp. 1035-1044
    • Tishkoff, S.A.1    Reed, F.A.2    Friedlaender, F.R.3
  • 48
    • 33845900450 scopus 로고    scopus 로고
    • Convergent adaptation of human lactase persistence in Africa and Europe
    • (19 co-authors).
    • Tishkoff SA, Reed FA, Ranciaro A, et al. (19 co-authors). 2007. Convergent adaptation of human lactase persistence in Africa and Europe. Nat Genet. 39:31-40.
    • (2007) Nat Genet. , vol.39 , pp. 31-40
    • Tishkoff, S.A.1    Reed, F.A.2    Ranciaro, A.3
  • 49
    • 29444451610 scopus 로고    scopus 로고
    • Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes
    • Voight BF, Adams AM, Frisse LA, Qian Y, Hudson RR, Di Rienzo A. 2005. Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes. Proc Natl Acad Sci USA. 102:18508-18513.
    • (2005) Proc Natl Acad Sci USA. , vol.102 , pp. 18508-18513
    • Voight, B.F.1    Adams, A.M.2    Frisse, L.A.3    Qian, Y.4    Hudson, R.R.5    Di Rienzo, A.6


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