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Volumn 3, Issue AUG, 2012, Pages

Systematic underestimation of the age of selected alleles

Author keywords

Allele age; Haplotype length; Selected allele; Selective sweep; Time to most recent common ancestor; tMRCA

Indexed keywords


EID: 84876033391     PISSN: None     EISSN: 16648021     Source Type: Journal    
DOI: 10.3389/fgene.2012.00165     Document Type: Article
Times cited : (6)

References (33)
  • 1
    • 8844227502 scopus 로고    scopus 로고
    • Population history and natural selection shape patterns of genetic variation in 132 genes
    • doi: 10.1371/journal.pbio.0020286
    • Akey,J.M.,Eberle,M.A.,Rieder, M.J.,Carlson,C.S.,Shriver,M. D., Nickerson, D. A., and Kruglyak, L. (2004). Population history and natural selection shape patterns of genetic variation in 132 genes. PLoS Biol. 2:e286. doi: 10.1371/journal.pbio.0020286
    • (2004) PLoS Biol , vol.2
    • Akey, J.M.1    Eberle, M.A.2    Rieder, M.J.3    Carlson, C.S.4    Shriver, M.D.5    Nickerson, D.A.6    Kruglyak, L.7
  • 3
    • 0029036829 scopus 로고
    • The hitchhiking effect on the site frequency spectrum of DNA polymorphisms
    • Braverman, J. M., Hudson, R. R., Kaplan, N. L., Langley, C. H., and Stephan, W. (1995). The hitchhiking effect on the site frequency spectrum of DNA polymorphisms. Genetics 140, 783-796.
    • (1995) Genetics , vol.140 , pp. 783-796
    • Braverman, J.M.1    Hudson, R.R.2    Kaplan, N.L.3    Langley, C.H.4    Stephan, W.5
  • 9
    • 0023998356 scopus 로고
    • Genetic variation of Drosophila melanogaster natural populations
    • David, J. R., and Capy, P. (1988). Genetic variation of Drosophila melanogaster natural populations. Trends Genet. 4, 106-111.
    • (1988) Trends Genet , vol.4 , pp. 106-111
    • David, J.R.1    Capy, P.2
  • 11
    • 18844439645 scopus 로고    scopus 로고
    • Soft sweeps: molecular population genetics of adaptation from standing genetic variation
    • Hermisson, J., and Pennings, P. S. (2005). Soft sweeps: molecular population genetics of adaptation from standing genetic variation. Genetics 169, 2335-2352.
    • (2005) Genetics , vol.169 , pp. 2335-2352
    • Hermisson, J.1    Pennings, P.S.2
  • 13
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • International HapMap Consortium
    • International HapMap Consortium. (2005). A haplotype map of the human genome. Nature 437, 1299-1320.
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 14
    • 3242727187 scopus 로고    scopus 로고
    • Human Evolutionary Genetics: Origins, Peoples and Disease
    • New York, NY: Garland
    • Jobling, M. A., Hurles, M., and Tyler-Smith, C. (2004). Human Evolutionary Genetics: Origins, Peoples and Disease. New York, NY: Garland Science.
    • (2004) Science
    • Jobling, M.A.1    Hurles, M.2    Tyler-Smith, C.3
  • 15
    • 0024372736 scopus 로고
    • The hitch-hiking effect revisited
    • Kaplan,N.L.,Hudson,R.R.,and Langley, C. H. (1989). The "hitch-hiking effect" revisited. Genetics 123, 887-899.
    • (1989) Genetics , vol.123 , pp. 887-899
    • Kaplan, N.L.1    Hudson, R.R.2    Langley, C.H.3
  • 16
    • 33746693757 scopus 로고    scopus 로고
    • Genomic signatures of positive selection in humans and the limits of outlier approaches
    • Kelley, J. L., Madeoy, J., Calhoun, J. C., Swanson, W., and Akey, J. M. (2006). Genomic signatures of positive selection in humans and the limits of outlier approaches. Genome Res. 16, 980-989.
    • (2006) Genome Res , vol.16 , pp. 980-989
    • Kelley, J.L.1    Madeoy, J.2    Calhoun, J.C.3    Swanson, W.4    Akey, J.M.5
  • 18
    • 76749097550 scopus 로고    scopus 로고
    • The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation
    • Pritchard, J. K., Pickrell, J. K., and Coop, G. (2010). The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation. Curr. Biol. 20, R208-R215.
    • (2010) Curr. Biol. , vol.20
    • Pritchard, J.K.1    Pickrell, J.K.2    Coop, G.3
  • 19
    • 0041817545 scopus 로고    scopus 로고
    • Estimating the time since the fixation of a beneficial allele
    • Przeworski, M. (2003). Estimating the time since the fixation of a beneficial allele. Genetics 164, 1667-1676.
    • (2003) Genetics , vol.164 , pp. 1667-1676
    • Przeworski, M.1
  • 20
    • 60149084807 scopus 로고    scopus 로고
    • The nature of selection during plant domestication
    • Purugganan, M. D., and Fuller, D. Q. (2009). The nature of selection during plant domestication. Nature 457, 843-848.
    • (2009) Nature , vol.457 , pp. 843-848
    • Purugganan, M.D.1    Fuller, D.Q.2
  • 21
    • 27644509150 scopus 로고    scopus 로고
    • Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa
    • Ramachandran, S., Deshpande, O., Roseman, C. C., Rosenberg, N. A., Feldman, M.W., and Cavalli-Sforza, L. L. (2005). Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa. Proc. Natl. Acad. Sci. U.S.A. 102, 15942-15947.
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , pp. 15942-15947
    • Ramachandran, S.1    Deshpande, O.2    Roseman, C.C.3    Rosenberg, N.A.4    Feldman, M.W.5    Cavalli-Sforza, L.L.6
  • 24
    • 27544497650 scopus 로고    scopus 로고
    • Calibrating a coalescent simulation of human genome sequence variation
    • Schaffner, S.F., Foo, C., Gabriel, S., Reich, D., Daly, M.J., and Altshuler, D. (2005). Calibrating a coalescent simulation of human genome sequence variation. Genome Res. 15, 1576-1583.
    • (2005) Genome Res , vol.15 , pp. 1576-1583
    • Schaffner, S.F.1    Foo, C.2    Gabriel, S.3    Reich, D.4    Daly, M.J.5    Altshuler, D.6
  • 25
    • 0029099781 scopus 로고
    • Properties of statistical tests of neutrality for DNApolymorphism data
    • Simonsen,K.L.,Churchill,G.A.,and Aquadro, C. F. (1995). Properties of statistical tests of neutrality for DNApolymorphism data. Genetics 141, 413-429.
    • (1995) Genetics , vol.141 , pp. 413-429
    • Simonsen, K.L.1    Churchill, G.A.2    Aquadro, C.F.3
  • 27
    • 0016220238 scopus 로고    scopus 로고
    • The hitch-hiking effect of a favourable gene
    • Smith, J. M., and Haigh, J. (1974). The hitch-hiking effect of a favourable gene. Genet. Res. 23, 23-35. .
    • Genet. Res. , vol.23 , pp. 23-35
    • Smith, J.M.1    Haigh, J.2
  • 28
    • 0027459098 scopus 로고
    • Allelic genealogy and human evolution
    • Takahata, N. (1993). Allelic genealogy and human evolution. Mol. Biol. Evol. 10, 2-22
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 2-22
    • Takahata, N.1
  • 29
    • 33644778674 scopus 로고    scopus 로고
    • Directional positive selection on an allele of arbitrary dominance
    • Teshima, K. M., and Przeworski, M. (2006). Directional positive selection on an allele of arbitrary dominance. Genetics 172, 713-718.
    • (2006) Genetics , vol.172 , pp. 713-718
    • Teshima, K.M.1    Przeworski, M.2
  • 31
    • 29444451610 scopus 로고    scopus 로고
    • Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes
    • Voight,B.F.,Adams,A.M.,Frisse,L. A., Qian, Y., Hudson, R. R., and Di Rienzo, A. (2005). Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes. Proc. Natl. Acad. Sci. U.S.A. 102, 18508-18513.
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , pp. 18508-18513
    • Voight, B.F.1    Adams, A.M.2    Frisse, L.A.3    Qian, Y.4    Hudson, R.R.5    Di Rienzo, A.6
  • 32
    • 33644981509 scopus 로고    scopus 로고
    • A map of recent positive selection in the human genome
    • doi: 10.1371/journal.pbio.0040072
    • Voight,B.F.,Kudaravalli,S.,Wen,X., and Pritchard, J. K. (2006). A map of recent positive selection in the human genome. PLoS Biol. 4:e72. doi: 10.1371/journal.pbio.0040072
    • (2006) PLoS Biol , vol.4
    • Voight, B.F.1    Kudaravalli, S.2    Wen, X.3    Pritchard, J.K.4
  • 33
    • 30444460720 scopus 로고    scopus 로고
    • Global land-scape of recent inferred Darwinian selection for Homo sapiens
    • Wang,E.T.,Kodama,G.,Baldi,P.,and Moyzis, R. K. (2006). Global land-scape of recent inferred Darwinian selection for Homo sapiens. Proc. Natl. Acad. Sci. U.S.A. 103, 135-140.
    • (2006) Proc. Natl. Acad. Sci. U.S.A. , vol.103 , pp. 135-140
    • Wang, E.T.1    Kodama, G.2    Baldi, P.3    Moyzis, R.K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.