메뉴 건너뛰기




Volumn 118, Issue 2, 2014, Pages 390-405

Enolization as an alternative proton delivery pathway in human aromatase (P450 19A1)

Author keywords

[No Author keywords available]

Indexed keywords

COUPLED PROCESS; HYBRID QM/MM; P450 ENZYMES; PEROXOCOMPLEXES; PROTON DELIVERY; QUANTUM MECHANICAL; REACTION MECHANISM; SUPEROXO COMPLEX;

EID: 84892738164     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp407365x     Document Type: Article
Times cited : (13)

References (85)
  • 1
    • 0023484747 scopus 로고
    • Institute for Scientific Information: Philadelphia, PA, Vol.
    • Brodie, A. M. H. ISI Atlas of Science: Pharmacology; Institute for Scientific Information: Philadelphia, PA, 1987; Vol. 1, p 266.
    • (1987) ISI Atlas of Science: Pharmacology , vol.1 , pp. 266
    • Brodie, A.M.H.1
  • 2
    • 2642661712 scopus 로고
    • Conversion of Androstenedione to Estrone by Placental Microsomes
    • Ryan, K. J. Conversion of Androstenedione to Estrone by Placental Microsomes Biochim. Biophys. Acta 1958, 27, 658-659
    • (1958) Biochim. Biophys. Acta , vol.27 , pp. 658-659
    • Ryan, K.J.1
  • 3
    • 84892193594 scopus 로고    scopus 로고
    • Substrate Oxidation by Cytochrome P450 Enzymes
    • In, 3 rd ed. Ortiz de Montellano, P. R. Kluwer Academic/Plenum Publishers: New York - 245
    • Ortiz de Montellano, P. R.; De Voss, J. J. Substrate Oxidation by Cytochrome P450 Enzymes. In Cytochrome P450, 3 rd ed.; Ortiz de Montellano, P. R., Ed.; Kluwer Academic/Plenum Publishers: New York, 2005; pp 183-245.
    • (2005) Cytochrome P450 , pp. 183
    • Ortiz De Montellano, P.R.1    De Voss, J.J.2
  • 4
    • 0037157603 scopus 로고    scopus 로고
    • Anastrozole Alone or in Combination with Tamoxifen Versus Tamoxifen Alone for Adjuvant Treatment of Postmenopausal Women with Early Breast Cancer: First Results of the ATAC Randomised Trial
    • Baum, M.; Budzar, A. U.; Cuzik, J.; Forbes, J.; Houghton, J. H.; Klijn, J. G.; Sahmoud, T. Anastrozole Alone or in Combination with Tamoxifen Versus Tamoxifen Alone for Adjuvant Treatment of Postmenopausal Women with Early Breast Cancer: First Results of the ATAC Randomised Trial Lancet 2002, 359, 2131-2139
    • (2002) Lancet , vol.359 , pp. 2131-2139
    • Baum, M.1    Budzar, A.U.2    Cuzik, J.3    Forbes, J.4    Houghton, J.H.5    Klijn, J.G.6    Sahmoud, T.7
  • 6
    • 0036080967 scopus 로고    scopus 로고
    • Aromatase Inhibitors in Breast Cancer Therapy
    • Brueggemeier, R. W. Aromatase Inhibitors in Breast Cancer Therapy Expert Rev. Anticancer Ther. 2002, 2, 181-191
    • (2002) Expert Rev. Anticancer Ther. , vol.2 , pp. 181-191
    • Brueggemeier, R.W.1
  • 7
    • 33847799949 scopus 로고
    • Aliphatic Hydroxylation via Oxygen Rebound. Oxygen Transfer Catalyzed by Iron
    • Groves, J. T.; McClusky, G. A. Aliphatic Hydroxylation via Oxygen Rebound. Oxygen Transfer Catalyzed by Iron J. Am. Chem. Soc. 1976, 98, 859-861
    • (1976) J. Am. Chem. Soc. , vol.98 , pp. 859-861
    • Groves, J.T.1    McClusky, G.A.2
  • 8
    • 0016860250 scopus 로고
    • Reassignment of the Absolute Configuration of 19-Substituted 19-Hydroxysteroids and Stereomechanism of Estrogen Biosynthesis
    • Osawa, Y.; Shibata, K.; Rohrer, D.; Weeks, C.; Duax, W. L. Reassignment of the Absolute Configuration of 19-Substituted 19-Hydroxysteroids and Stereomechanism of Estrogen Biosynthesis J. Am. Chem. Soc. 1975, 97, 4400-4402
    • (1975) J. Am. Chem. Soc. , vol.97 , pp. 4400-4402
    • Osawa, Y.1    Shibata, K.2    Rohrer, D.3    Weeks, C.4    Duax, W.L.5
  • 10
    • 0016391485 scopus 로고
    • Unusually Facile Aromatization of 2β-Hydroxy-19-Oxo-4-Androstene-3, 17-Dione to Estrone: Implications in Estrogen Biosynthesis
    • Hosoda, H.; Fishman, J. Unusually Facile Aromatization of 2β-Hydroxy-19-Oxo-4-Androstene-3,17-Dione to Estrone: Implications in Estrogen Biosynthesis J. Am. Chem. Soc. 1974, 96, 7325-7329
    • (1974) J. Am. Chem. Soc. , vol.96 , pp. 7325-7329
    • Hosoda, H.1    Fishman, J.2
  • 11
    • 0017326077 scopus 로고
    • Participation of a Nonenzymatic Transformation in the Biosynthesis of Estrogens from Androgens
    • Goto, J.; Fishman, J. Participation of a Nonenzymatic Transformation in the Biosynthesis of Estrogens from Androgens Science 1977, 195, 80-81
    • (1977) Science , vol.195 , pp. 80-81
    • Goto, J.1    Fishman, J.2
  • 12
    • 0021353274 scopus 로고
    • Immunological Probe of Estrogen Biosynthesis: Evidence for the 2 Beta-Hydroxylative Pathway in Aromatization of Androgens
    • Hahn, E. F.; Fishman, J. Immunological Probe of Estrogen Biosynthesis: Evidence for the 2 Beta-Hydroxylative Pathway in Aromatization of Androgens J. Biol. Chem. 1984, 259, 1689-1694
    • (1984) J. Biol. Chem. , vol.259 , pp. 1689-1694
    • Hahn, E.F.1    Fishman, J.2
  • 13
    • 0016424344 scopus 로고
    • Conversion of an Androgen Epoxide into 17β-Estradiol by Human Placental Microsomes
    • Morand, P.; Williamson, D. G.; Layne, D. S.; Lompa-Krzymien, L.; Salvador, J. Conversion of an Androgen Epoxide into 17β-Estradiol by Human Placental Microsomes Biochemistry 1975, 14, 635-638
    • (1975) Biochemistry , vol.14 , pp. 635-638
    • Morand, P.1    Williamson, D.G.2    Layne, D.S.3    Lompa-Krzymien, L.4    Salvador, J.5
  • 14
    • 37049091636 scopus 로고
    • Acid- and Base-Catalysed Reactions of 4 β,5 β - and 4 α,5 α -Epoxyandrostane-3,17,19-Trione
    • Mastalerz, H.; Morand, P. Acid- and Base-Catalysed Reactions of 4 β,5 β-and 4 α,5 α -Epoxyandrostane-3,17,19-Trione J. Chem. Soc., Perkin Trans. 1 1982, 2611-2615
    • (1982) J. Chem. Soc., Perkin Trans. 1 , pp. 2611-2615
    • Mastalerz, H.1    Morand, P.2
  • 15
    • 0020073188 scopus 로고
    • Mechanistic Studies on C-19 Demethylation in Oestrogen Biosynthesis
    • Akhtar, M.; Calder, M. R.; Corina, D. L.; Wright, J. N. Mechanistic Studies on C-19 Demethylation in Oestrogen Biosynthesis Biochem. J. 1982, 201, 569-580
    • (1982) Biochem. J. , vol.201 , pp. 569-580
    • Akhtar, M.1    Calder, M.R.2    Corina, D.L.3    Wright, J.N.4
  • 16
    • 0036168536 scopus 로고    scopus 로고
    • Time-Dependent Aromatase Inactivation by 4 β,5 β -Epoxides of the Natural Substrate Androstenedione and its 19-Oxygenated Analogs
    • Numazawa, M.; Yoshimura, A.; Tachibana, M.; Shelangouski, M.; Ishikawa, M. Time-Dependent Aromatase Inactivation by 4 β,5 β -Epoxides of the Natural Substrate Androstenedione and its 19-Oxygenated Analogs Steroids 2002, 67, 185-193
    • (2002) Steroids , vol.67 , pp. 185-193
    • Numazawa, M.1    Yoshimura, A.2    Tachibana, M.3    Shelangouski, M.4    Ishikawa, M.5
  • 17
    • 0014691396 scopus 로고
    • Mechanism of Estrogen Biosynthesis. VI. The Stereochemistry of Hydrogen Elimination at C-2 during Aromatization
    • Brodie, H. J.; Kripalani, K. J.; Possanza, G. Mechanism of Estrogen Biosynthesis. VI. The Stereochemistry of Hydrogen Elimination at C-2 During Aromatization J. Am. Chem. Soc. 1969, 91, 1241-1242
    • (1969) J. Am. Chem. Soc. , vol.91 , pp. 1241-1242
    • Brodie, H.J.1    Kripalani, K.J.2    Possanza, G.3
  • 18
    • 0014601045 scopus 로고
    • Stereochemistry of Estrogen Biosynthesis
    • Fishman, J.; Guzik, H.; Dixon, D. Stereochemistry of Estrogen Biosynthesis Biochemistry 1969, 8, 4304-4309
    • (1969) Biochemistry , vol.8 , pp. 4304-4309
    • Fishman, J.1    Guzik, H.2    Dixon, D.3
  • 19
    • 0022921677 scopus 로고
    • Synthesis and Study of a Methoxyhydroperoxide-Androstenedione Derivative; Analogue of a Potential Aromatase Intermediate
    • Cole, P. A.; Robinson, C. H. Synthesis and Study of a Methoxyhydroperoxide-Androstenedione Derivative; Analogue of a Potential Aromatase Intermediate J. Chem. Soc., Chem. Commun. 1986, 22) 1651-1653
    • (1986) J. Chem. Soc., Chem. Commun. , Issue.22 , pp. 1651-1653
    • Cole, P.A.1    Robinson, C.H.2
  • 20
    • 0025230338 scopus 로고
    • Conversion of a 3-Desoxysteroid to 3-Desoxyestrogen by Human Placental Aromatase
    • Cole, P. A.; Bean, J. M.; Robinson, C. H. Conversion of a 3-Desoxysteroid to 3-Desoxyestrogen by Human Placental Aromatase Proc. Natl. Acad. Sci. U.S.A. 1990, 87, 2999-3003
    • (1990) Proc. Natl. Acad. Sci. U.S.A. , vol.87 , pp. 2999-3003
    • Cole, P.A.1    Bean, J.M.2    Robinson, C.H.3
  • 21
    • 84962441184 scopus 로고    scopus 로고
    • The Final Catalytic Step of Cytochrome P450 Aromatase: A Density Functional Theory Study
    • Hackett, J. C.; Brueggemeier, R. W.; Hadad, C. M. The Final Catalytic Step of Cytochrome P450 Aromatase: A Density Functional Theory Study J. Am. Chem. Soc. 2005, 127, 5224-5237
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 5224-5237
    • Hackett, J.C.1    Brueggemeier, R.W.2    Hadad, C.M.3
  • 22
    • 0025284640 scopus 로고
    • Conversion of 19-Oxo[2 Beta-2H]Androgens into Oestrogens by Human Placental Aromatase: An Unexpected Stereochemical Outcome
    • Cole, P. A.; Robinson, C. H. Conversion of 19-Oxo[2 Beta-2H]Androgens into Oestrogens by Human Placental Aromatase: An Unexpected Stereochemical Outcome Biochem. J. 1990, 268, 553-561
    • (1990) Biochem. J. , vol.268 , pp. 553-561
    • Cole, P.A.1    Robinson, C.H.2
  • 24
    • 58149339806 scopus 로고    scopus 로고
    • Structural Basis for Androgen Specificity and Oestrogen Synthesis in Human Aromatase
    • Ghosh, D.; Griswold, J.; Erman, M.; Pangborn, W. Structural Basis for Androgen Specificity and Oestrogen Synthesis in Human Aromatase Nature 2009, 457, 219-223
    • (2009) Nature , vol.457 , pp. 219-223
    • Ghosh, D.1    Griswold, J.2    Erman, M.3    Pangborn, W.4
  • 25
    • 84859608215 scopus 로고    scopus 로고
    • Coupled Electron Transfer and Proton Hopping in the Final Step of CYP19-Catalyzed Androgen Aromatization
    • Sen, K.; Hackett, J. C. Coupled Electron Transfer and Proton Hopping in the Final Step of CYP19-Catalyzed Androgen Aromatization Biochemistry 2012, 51, 3039-3049
    • (2012) Biochemistry , vol.51 , pp. 3039-3049
    • Sen, K.1    Hackett, J.C.2
  • 27
    • 0035925164 scopus 로고    scopus 로고
    • Hydroxylation of Camphor by Reduced Oxy-Cytochrome P450cam: Mechanistic Implications of EPR and ENDOR Studies of Catalytic Intermediates in Native and Mutant Enzymes
    • Davydov, R.; Makris, T. M.; Kofman, V.; Werst, D. E.; Sligar, S. G.; Hoffman, B. M. Hydroxylation of Camphor by Reduced Oxy-Cytochrome P450cam: Mechanistic Implications of EPR and ENDOR Studies of Catalytic Intermediates in Native and Mutant Enzymes J. Am. Chem. Soc. 2001, 123, 1403-1415
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 1403-1415
    • Davydov, R.1    Makris, T.M.2    Kofman, V.3    Werst, D.E.4    Sligar, S.G.5    Hoffman, B.M.6
  • 28
    • 27744608648 scopus 로고    scopus 로고
    • New Features in the Catalytic Cycle of Cytochrome P450 during the Formation of Compound i from Compound 0
    • Kumar, D.; Hirao, H.; de Visser, S. P.; Zheng, J.; Wang, D.; Thiel, W.; Shaik, S. New Features in the Catalytic Cycle of Cytochrome P450 during the Formation of Compound I from Compound 0 J. Phys. Chem. B 2005, 109, 19946-19951
    • (2005) J. Phys. Chem. B , vol.109 , pp. 19946-19951
    • Kumar, D.1    Hirao, H.2    De Visser, S.P.3    Zheng, J.4    Wang, D.5    Thiel, W.6    Shaik, S.7
  • 29
    • 21944432511 scopus 로고    scopus 로고
    • Theoretical Perspective on the Structure and Mechanism of Cytochrome P450 Enzymes
    • Shaik, S.; Kumar, D.; de Visser, S. P.; Altun, A.; Thiel, W. Theoretical Perspective on the Structure and Mechanism of Cytochrome P450 Enzymes Chem. Rev. 2005, 105, 2279-2328
    • (2005) Chem. Rev. , vol.105 , pp. 2279-2328
    • Shaik, S.1    Kumar, D.2    De Visser, S.P.3    Altun, A.4    Thiel, W.5
  • 30
    • 77349115125 scopus 로고    scopus 로고
    • P450 Enzymes: Their Structure, Reactivity, and Selectivity - Modeled by QM/MM Calculations
    • Shaik, S.; Cohen, S.; Wang, Y.; Chen, H.; Kumar, D.; Thiel, W. P450 Enzymes: Their Structure, Reactivity, and Selectivity-Modeled by QM/MM Calculations Chem. Rev. 2010, 110, 949-1017
    • (2010) Chem. Rev. , vol.110 , pp. 949-1017
    • Shaik, S.1    Cohen, S.2    Wang, Y.3    Chen, H.4    Kumar, D.5    Thiel, W.6
  • 31
    • 0032500330 scopus 로고    scopus 로고
    • Theoretical Investigation of the Proton Assisted Pathway to Formation of Cytochrome P450 Compound i
    • Harris, D. L.; Loew, G. H. Theoretical Investigation of the Proton Assisted Pathway to Formation of Cytochrome P450 Compound I J. Am. Chem. Soc. 1998, 120, 8941-8948
    • (1998) J. Am. Chem. Soc. , vol.120 , pp. 8941-8948
    • Harris, D.L.1    Loew, G.H.2
  • 32
    • 0037138629 scopus 로고    scopus 로고
    • Proton-Transfer Dynamics in the Activation of Cytochrome P450eryF
    • Guallar, V.; Harris, D. L.; Batista, V. S.; Miller, W. H. Proton-Transfer Dynamics in the Activation of Cytochrome P450eryF J. Am. Chem. Soc. 2002, 124, 1430-1437
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 1430-1437
    • Guallar, V.1    Harris, D.L.2    Batista, V.S.3    Miller, W.H.4
  • 33
    • 0037145073 scopus 로고    scopus 로고
    • Oxidation and Electronic State Dependence of Proton Transfer in the Enzymatic Cycle of Cytochrome P450eryF
    • Harris, D. L. Oxidation and Electronic State Dependence of Proton Transfer in the Enzymatic Cycle of Cytochrome P450eryF J. Inorg. Biochem. 2002, 91, 568-585
    • (2002) J. Inorg. Biochem. , vol.91 , pp. 568-585
    • Harris, D.L.1
  • 34
    • 84962377244 scopus 로고    scopus 로고
    • A Theoretical Study on the Mechanism of Camphor Hydroxylation by Compound i of Cytochrome P450
    • Kamachi, T.; Yoshizawa, K. A Theoretical Study on the Mechanism of Camphor Hydroxylation by Compound I of Cytochrome P450 J. Am. Chem. Soc. 2003, 125, 4652-4661
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 4652-4661
    • Kamachi, T.1    Yoshizawa, K.2
  • 35
    • 3142761726 scopus 로고    scopus 로고
    • cam Enzymatic Catalysis Cycle: A Quantum Mechanics/Molecular Mechanics Study
    • cam Enzymatic Catalysis Cycle: A Quantum Mechanics/Molecular Mechanics Study J. Am. Chem. Soc. 2004, 126, 8501-8508
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 8501-8508
    • Guallar, V.1    Friesner, R.A.2
  • 37
    • 0032581042 scopus 로고    scopus 로고
    • Understanding the Role of the Essential Asp251 in Cytochrome P450cam Using Site-Directed Mutagenesis, Crystallography, and Kinetic Solvent Isotope Effect
    • Vidakovic, M.; Sligar, S. G.; Li, H.; Poulos, T. L. Understanding the Role of the Essential Asp251 in Cytochrome P450cam Using Site-Directed Mutagenesis, Crystallography, and Kinetic Solvent Isotope Effect Biochemistry 1998, 37, 9211-9219
    • (1998) Biochemistry , vol.37 , pp. 9211-9219
    • Vidakovic, M.1    Sligar, S.G.2    Li, H.3    Poulos, T.L.4
  • 38
    • 0242669318 scopus 로고    scopus 로고
    • Protein Side-Chain Motion and Hydration in Proton-Transfer Pathways. Results for Cytochrome P450cam
    • Taraphder, S.; Hummer, G. Protein Side-Chain Motion and Hydration in Proton-Transfer Pathways. Results for Cytochrome P450cam J. Am. Chem. Soc. 2003, 125, 3931-3940
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 3931-3940
    • Taraphder, S.1    Hummer, G.2
  • 39
    • 33749520822 scopus 로고    scopus 로고
    • QM/MM Study of Mechanisms for Compound i Formation in the Catalytic Cycle of Cytochrome P450cam
    • Zheng, J. J.; Wang, D.; Thiel, W.; Shaik, S. QM/MM Study of Mechanisms for Compound I Formation in the Catalytic Cycle of Cytochrome P450cam J. Am. Chem. Soc. 2006, 128, 13204-13215
    • (2006) J. Am. Chem. Soc. , vol.128 , pp. 13204-13215
    • Zheng, J.J.1    Wang, D.2    Thiel, W.3    Shaik, S.4
  • 40
    • 46849085410 scopus 로고    scopus 로고
    • Quantum and Molecular Mechanical Study of the First Proton Transfer in the Catalytic Cycle of Cytochrome P450cam and Its Mutant D251N
    • Wang, D.; Zheng, J. J.; Shaik, S.; Thiel, W. Quantum and Molecular Mechanical Study of the First Proton Transfer in the Catalytic Cycle of Cytochrome P450cam and Its Mutant D251N J. Phys. Chem. B 2008, 112, 5126-5138
    • (2008) J. Phys. Chem. B , vol.112 , pp. 5126-5138
    • Wang, D.1    Zheng, J.J.2    Shaik, S.3    Thiel, W.4
  • 41
    • 0026558679 scopus 로고
    • A Site-Directed Mutagenesis Study of Human Placental Aromatase
    • Zhou, D. J.; Korzekwa, K. R.; Poulos, T.; Chen, S. A. A Site-Directed Mutagenesis Study of Human Placental Aromatase J. Biol. Chem. 1992, 267, 762-768
    • (1992) J. Biol. Chem. , vol.267 , pp. 762-768
    • Zhou, D.J.1    Korzekwa, K.R.2    Poulos, T.3    Chen, S.A.4
  • 42
    • 32244443818 scopus 로고    scopus 로고
    • The "somersault" Mechanism for the P-450 Hydroxylation of Hydrocarbons. The Intervention of Transient Inverted Metastable Hydroperoxides
    • Bach, R. D.; Dmitrenko, O. The "Somersault" Mechanism for the P-450 Hydroxylation of Hydrocarbons. The Intervention of Transient Inverted Metastable Hydroperoxides J. Am. Chem. Soc. 2006, 128, 1474-1488
    • (2006) J. Am. Chem. Soc. , vol.128 , pp. 1474-1488
    • Bach, R.D.1    Dmitrenko, O.2
  • 43
    • 0026592208 scopus 로고
    • Functional Domains of Aromatase Cytochrome P450 Inferred from Comparative Analyses of Amino Acid Sequences and Substantiated by Site-Directed Mutagenesis Experiments
    • Chen, S.; Zhou, D. Functional Domains of Aromatase Cytochrome P450 Inferred from Comparative Analyses of Amino Acid Sequences and Substantiated by Site-Directed Mutagenesis Experiments J. Biol. Chem. 1992, 267, 22587-22594
    • (1992) J. Biol. Chem. , vol.267 , pp. 22587-22594
    • Chen, S.1    Zhou, D.2
  • 44
    • 80053305889 scopus 로고    scopus 로고
    • Does Compound i Vary Significantly between Isoforms of Cytochrome P450?
    • Lonsdale, R.; Oláh, J.; Mulholland, A. J.; Harvey, J. N. Does Compound I Vary Significantly between Isoforms of Cytochrome P450? J. Am. Chem. Soc. 2011, 133, 15464-15474
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 15464-15474
    • Lonsdale, R.1    Oláh, J.2    Mulholland, A.J.3    Harvey, J.N.4
  • 45
    • 79954997862 scopus 로고    scopus 로고
    • Understanding the Determinants of Selectivity in Drug Metabolism through Modeling of Dextromethorphan Oxidation by Cytochrome P450
    • Oláh, J.; Mulholland, A. J.; Harvey, J. N. Understanding the Determinants of Selectivity in Drug Metabolism through Modeling of Dextromethorphan Oxidation by Cytochrome P450 Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 6050-6055
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 6050-6055
    • Oláh, J.1    Mulholland, A.J.2    Harvey, J.N.3
  • 46
    • 25144520939 scopus 로고    scopus 로고
    • Electronic Structure of Compound i in Human Isoforms of Cytochrome P450 from QM/MM Modeling
    • Bathelt, C. M.; Zurek, J.; Mulholland, A. J.; Harvey, J. N. Electronic Structure of Compound I in Human Isoforms of Cytochrome P450 from QM/MM Modeling J. Am. Chem. Soc. 2005, 127, 12900-12908
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 12900-12908
    • Bathelt, C.M.1    Zurek, J.2    Mulholland, A.J.3    Harvey, J.N.4
  • 48
    • 0000189651 scopus 로고
    • Density-Functional Thermochemistry. III. The Role of Exact Exchange
    • Becke, A. D. Density-Functional Thermochemistry. III. The Role of Exact Exchange J. Chem. Phys. 1993, 98, 5648-5652
    • (1993) J. Chem. Phys. , vol.98 , pp. 5648-5652
    • Becke, A.D.1
  • 51
    • 77951680464 scopus 로고    scopus 로고
    • A Consistent and Accurate Ab Initio Parametrization of Density Functional Dispersion Correction (DFT-D) for the 94 Elements H-Pu
    • Grimme, S.; Antony, J.; Ehrlich, S.; Krieg, H. A Consistent and Accurate Ab Initio Parametrization of Density Functional Dispersion Correction (DFT-D) for the 94 Elements H-Pu J. Chem. Phys. 2010, 132, 154104
    • (2010) J. Chem. Phys. , vol.132 , pp. 154104
    • Grimme, S.1    Antony, J.2    Ehrlich, S.3    Krieg, H.4
  • 53
    • 28644432877 scopus 로고    scopus 로고
    • Very Fast Empirical Prediction and Interpretation of Protein pKa Values
    • Li, H.; Robertson, A. D.; Jensen, J. H. Very Fast Empirical Prediction and Interpretation of Protein pKa Values Proteins 2005, 61, 704-721
    • (2005) Proteins , vol.61 , pp. 704-721
    • Li, H.1    Robertson, A.D.2    Jensen, J.H.3
  • 54
    • 57349090665 scopus 로고    scopus 로고
    • Very Fast Prediction and Rationalization of pKa Values for Protein-Ligand Complexes
    • Bas, D. C.; Rogers, D. M.; Jensen, J. H. Very Fast Prediction and Rationalization of pKa Values for Protein-Ligand Complexes Proteins 2008, 73, 765-783
    • (2008) Proteins , vol.73 , pp. 765-783
    • Bas, D.C.1    Rogers, D.M.2    Jensen, J.H.3
  • 55
    • 79951476387 scopus 로고    scopus 로고
    • PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKa predictions
    • Olsson, M. H. M.; Søndergard, C. R.; Rostkowski, M.; Jensen, J. H. PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKa predictions J. Chem. Theor. Comp. 2011, 7, 525-537
    • (2011) J. Chem. Theor. Comp. , vol.7 , pp. 525-537
    • Olsson, M.H.M.1    Søndergard, C.R.2    Rostkowski, M.3    Jensen, J.H.4
  • 56
    • 79960258119 scopus 로고    scopus 로고
    • Improved Treatment of Ligands and Coupling Effects in Empirical Calculation and Rationalization of pKa Values
    • Søndergaard, C. R.; Olsson, M. H. M.; Rostkowski, M.; Jensen, J. H. Improved Treatment of Ligands and Coupling Effects in Empirical Calculation and Rationalization of pKa Values J. Chem. Theory Comput. 2011, 7, 2284-2295
    • (2011) J. Chem. Theory Comput. , vol.7 , pp. 2284-2295
    • Søndergaard, C.R.1    Olsson, M.H.M.2    Rostkowski, M.3    Jensen, J.H.4
  • 57
    • 84864473993 scopus 로고    scopus 로고
    • H++ 3.0: Automating pK Prediction and the Preparation of Biomolecular Structures for Atomistic Molecular Modeling and Simulation
    • Anandakrishnan, R.; Aguilar, B.; Onufriev, A. V. H++ 3.0: Automating pK Prediction and the Preparation of Biomolecular Structures for Atomistic Molecular Modeling and Simulation Nucleic Acids Res. 2012, 40, 537-541
    • (2012) Nucleic Acids Res. , vol.40 , pp. 537-541
    • Anandakrishnan, R.1    Aguilar, B.2    Onufriev, A.V.3
  • 58
    • 33646794930 scopus 로고    scopus 로고
    • A Simple Clustering Algorithm Can Be Accurate Enough for Use in Calculations of pKs in Macromolecules
    • Myers, J.; Grothaus, G.; Narayanan, S.; Onufriev, A. A Simple Clustering Algorithm Can Be Accurate Enough for Use in Calculations of pKs in Macromolecules Proteins 2006, 63, 928-938
    • (2006) Proteins , vol.63 , pp. 928-938
    • Myers, J.1    Grothaus, G.2    Narayanan, S.3    Onufriev, A.4
  • 62
    • 25144520939 scopus 로고    scopus 로고
    • Electronic Structure of Compound i in Human Isoforms of Cytochrome P450 from QM/MM Modeling
    • Bathelt, C. M.; Zurek, J.; Mulholland, A. J.; Harvey, J. N. Electronic Structure of Compound I in Human Isoforms of Cytochrome P450 from QM/MM Modeling J. Am. Chem. Soc. 2005, 127, 12900-12908
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 12900-12908
    • Bathelt, C.M.1    Zurek, J.2    Mulholland, A.J.3    Harvey, J.N.4
  • 63
    • 0242593434 scopus 로고    scopus 로고
    • Development and Current Status of the CHARMM Force Field for Nucleic Acids
    • MacKerell, A. D, Jr.; Banavali, N.; Foloppe, N. Development and Current Status of the CHARMM Force Field for Nucleic Acids Biopolymers 2000, 56, 257-265
    • (2000) Biopolymers , vol.56 , pp. 257-265
    • Mackerell, Jr.A.D.1    Banavali, N.2    Foloppe, N.3
  • 65
    • 5644248354 scopus 로고    scopus 로고
    • Spin-Forbidden CO Ligand Recombination in Myoglobin
    • Harvey, J. N. Spin-Forbidden CO Ligand Recombination in Myoglobin Faraday Discuss. 2004, 127) 165-177
    • (2004) Faraday Discuss. , Issue.127 , pp. 165-177
    • Harvey, J.N.1
  • 66
    • 84892718376 scopus 로고    scopus 로고
    • TINKER - Software Tools for Molecular Design. (accessed Oct 5).
    • TINKER-Software Tools for Molecular Design. http://dasher.wustl.edu/ tinker/ (accessed Oct 5, 2011).
    • (2011)
  • 67
    • 80053994130 scopus 로고    scopus 로고
    • Polarizable Atomic Multipole-Based Molecular Mechanics for Organic Molecules
    • Ren, P.; Wu, C.; Ponder, J. W. Polarizable Atomic Multipole-Based Molecular Mechanics for Organic Molecules J. Chem. Theory Comput. 2011, 7, 3143-3161
    • (2011) J. Chem. Theory Comput. , vol.7 , pp. 3143-3161
    • Ren, P.1    Wu, C.2    Ponder, J.W.3
  • 68
    • 84961983977 scopus 로고    scopus 로고
    • Does DFT-D Estimate Accurate Energies for the Binding of Ligands to Metal Complexes?
    • Ryde, U.; Mata, R. A.; Grimme, S. Does DFT-D Estimate Accurate Energies for the Binding of Ligands to Metal Complexes? Dalton Trans. 2011, 40, 11176-11183
    • (2011) Dalton Trans. , vol.40 , pp. 11176-11183
    • Ryde, U.1    Mata, R.A.2    Grimme, S.3
  • 69
    • 77956632873 scopus 로고    scopus 로고
    • Significant van der Waals Effects in Transition Metal Complexes
    • Siegbahn, P. E. M.; Blomberg, M. R. A.; Chen, S. L. Significant van der Waals Effects in Transition Metal Complexes J. Chem. Theory Comput. 2010, 6, 2040-2044
    • (2010) J. Chem. Theory Comput. , vol.6 , pp. 2040-2044
    • Siegbahn, P.E.M.1    Blomberg, M.R.A.2    Chen, S.L.3
  • 70
    • 78149341694 scopus 로고    scopus 로고
    • Inclusion of Dispersion Effects Significantly Improves Accuracy of Calculated Reaction Barriers for Cytochrome P450 Catalyzed Reactions
    • Lonsdale, R.; Harvey, J. N.; Mulholland, A. J. Inclusion of Dispersion Effects Significantly Improves Accuracy of Calculated Reaction Barriers for Cytochrome P450 Catalyzed Reactions J. Phys. Chem. Lett. 2010, 1, 3232-3237
    • (2010) J. Phys. Chem. Lett. , vol.1 , pp. 3232-3237
    • Lonsdale, R.1    Harvey, J.N.2    Mulholland, A.J.3
  • 71
    • 84869025099 scopus 로고    scopus 로고
    • Effects of Dispersion in Density Functional Based Quantum Mechanical/Molecular Mechanical Calculations on Cytochrome P450 Catalyzed Reactions
    • Lonsdale, R.; Harvey, J. N.; Mulholland, A. J. Effects of Dispersion in Density Functional Based Quantum Mechanical/Molecular Mechanical Calculations on Cytochrome P450 Catalyzed Reactions J. Chem. Theory Comput. 2012, 8, 4637-4645
    • (2012) J. Chem. Theory Comput. , vol.8 , pp. 4637-4645
    • Lonsdale, R.1    Harvey, J.N.2    Mulholland, A.J.3
  • 72
    • 33750559983 scopus 로고    scopus 로고
    • Semiempirical GGA-type Density Functional Constructed with a Long-Range Dispersion Correction
    • Grimme, S. Semiempirical GGA-type Density Functional Constructed with a Long-Range Dispersion Correction J. Comput. Chem. 2006, 27, 1787-1799
    • (2006) J. Comput. Chem. , vol.27 , pp. 1787-1799
    • Grimme, S.1
  • 73
    • 0033963034 scopus 로고    scopus 로고
    • Molden: A Pre- and Post-Processing Program for Molecular and Electronic Structures
    • Schaftenaar, G.; Noordik, J. H. Molden: a Pre- and Post-Processing Program for Molecular and Electronic Structures J. Comput.-Aided Mol. Des. 2000, 14, 123-134
    • (2000) J. Comput.-Aided Mol. Des. , vol.14 , pp. 123-134
    • Schaftenaar, G.1    Noordik, J.H.2
  • 75
    • 43049141516 scopus 로고    scopus 로고
    • The M06 Suite of Density Functionals for Main Group Thermochemistry, Thermochemical Kinetics, Noncovalent Interactions, Excited States, and Transition Elements: Two New Functionals and Systematic Testing of Four M06-Class Functionals and 12 other Functionals
    • Zhao, Y.; Truhlar, D. G. The M06 Suite of Density Functionals for Main Group Thermochemistry, Thermochemical Kinetics, Noncovalent Interactions, Excited States, and Transition Elements: Two New Functionals and Systematic Testing of Four M06-Class Functionals and 12 other Functionals Theor. Chem. Acc. 2008, 120, 215-241
    • (2008) Theor. Chem. Acc. , vol.120 , pp. 215-241
    • Zhao, Y.1    Truhlar, D.G.2
  • 76
    • 0242593713 scopus 로고    scopus 로고
    • Climbing the Density Functional Ladder: Nonempirical Meta-Generalized Gradient Approximation Designed for Molecules and Solids
    • Tao, J. M.; Perdew, J. P.; Staroverov, V. N.; Scuseria, G. E. Climbing the Density Functional Ladder: Nonempirical Meta-Generalized Gradient Approximation Designed for Molecules and Solids Phys. Rev. Lett. 2003, 91, 146401
    • (2003) Phys. Rev. Lett. , vol.91 , pp. 146401
    • Tao, J.M.1    Perdew, J.P.2    Staroverov, V.N.3    Scuseria, G.E.4
  • 77
    • 0345491105 scopus 로고
    • Development of the Colle-Salvetti Correlation-Energy Formula into a Functional of the Electron Density
    • Lee, C.; Yang, W.; Parr, R. G. Development of the Colle-Salvetti Correlation-Energy Formula into a Functional of the Electron Density Phys. Rev. B 1988, 37, 785-789
    • (1988) Phys. Rev. B , vol.37 , pp. 785-789
    • Lee, C.1    Yang, W.2    Parr, R.G.3
  • 78
    • 55849117399 scopus 로고    scopus 로고
    • Long-Range Corrected Hybrid Density Functionals with Damped Atom-Atom Dispersion Corrections
    • Chai, J. D.; Head-Gordon, M. Long-Range Corrected Hybrid Density Functionals with Damped Atom-Atom Dispersion Corrections Phys. Chem. Chem. Phys. 2008, 10, 6615-6620
    • (2008) Phys. Chem. Chem. Phys. , vol.10 , pp. 6615-6620
    • Chai, J.D.1    Head-Gordon, M.2
  • 79
    • 0030588867 scopus 로고    scopus 로고
    • Electronic, Vibrational and Environmental Effects on the Hyperfine Coupling Constants of Nitroside Radicals. H2NO as a Case Study
    • Barone, V. Electronic, Vibrational and Environmental Effects on the Hyperfine Coupling Constants of Nitroside Radicals. H2NO as a Case Study Chem. Phys. Lett. 1996, 262, 201-206
    • (1996) Chem. Phys. Lett. , vol.262 , pp. 201-206
    • Barone, V.1
  • 80
    • 0000979648 scopus 로고    scopus 로고
    • Development and Validation of Reliable Quantum Mechanical Approaches for the Study of Free Radicals in Solution
    • Rega, N.; Cossi, M.; Barone, V. Development and Validation of Reliable Quantum Mechanical Approaches for the Study of Free Radicals in Solution J. Chem. Phys. 1996, 105, 11060-11067
    • (1996) J. Chem. Phys. , vol.105 , pp. 11060-11067
    • Rega, N.1    Cossi, M.2    Barone, V.3
  • 81
    • 80455132063 scopus 로고    scopus 로고
    • Theoretical Study of the Mechanism of Proton Transfer in the Esterase EstB from Burkholderia Gladioli
    • Chen, L.; Kong, X.; Liang, Z.; Ye, F.; Yu, K.; Dai, W.; Wu, D.; Luo, C.; Jiang, H. Theoretical Study of the Mechanism of Proton Transfer in the Esterase EstB from Burkholderia Gladioli J. Phys. Chem. B 2011, 115, 13019-13025
    • (2011) J. Phys. Chem. B , vol.115 , pp. 13019-13025
    • Chen, L.1    Kong, X.2    Liang, Z.3    Ye, F.4    Yu, K.5    Dai, W.6    Wu, D.7    Luo, C.8    Jiang, H.9
  • 82
    • 84961974261 scopus 로고    scopus 로고
    • Computational Evidence for the Catalytic Mechanism of Caspase-7. A DFT Investigation
    • Miscione, G. P.; Calvaresi, M.; Bottoni, A. Computational Evidence for the Catalytic Mechanism of Caspase-7. A DFT Investigation J. Phys. Chem. B 2010, 114, 4637-4645
    • (2010) J. Phys. Chem. B , vol.114 , pp. 4637-4645
    • Miscione, G.P.1    Calvaresi, M.2    Bottoni, A.3
  • 83
    • 84874988746 scopus 로고    scopus 로고
    • Does Hydrogen-Bonding Donation to Manganese(IV)-Oxo and Iron(IV)-Oxo Oxidants Affect the Oxygen-Atom Transfer Ability? A Computational Study
    • Latifi, R.; Sainna, M. A.; Rybak-Akimova, E. V.; de Visser, S. P. Does Hydrogen-Bonding Donation to Manganese(IV)-Oxo and Iron(IV)-Oxo Oxidants Affect the Oxygen-Atom Transfer Ability? A Computational Study Chem.-Eur. J. 2013, 19, 4058-4068
    • (2013) Chem. - Eur. J. , vol.19 , pp. 4058-4068
    • Latifi, R.1    Sainna, M.A.2    Rybak-Akimova, E.V.3    De Visser, S.P.4
  • 84
    • 70350660770 scopus 로고    scopus 로고
    • Finite-Temperature Effects in Enzymatic Reactions - Insights from QM/MM Free-Energy Simulations
    • Senn, H. M.; Kästner, J.; Breidung, J.; Thiel, W. Finite-Temperature Effects in Enzymatic Reactions-Insights from QM/MM Free-Energy Simulations Can. J. Chem. 2009, 87, 1322-1337
    • (2009) Can. J. Chem. , vol.87 , pp. 1322-1337
    • Senn, H.M.1    Kästner, J.2    Breidung, J.3    Thiel, W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.